Capnocytophaga granulosa (DSM 11449, ATCC 51502, JCM 8566)

Name: Capnocytophaga granulosa (DSM 11449, ATCC 51502, JCM 8566)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5492

Type strain

Strain Designation B0611

Culture col. no. DSM 11449 ATCC 51502 JCM 8566 B0611 CCUG 32991 4 more

NCBI tax ID(s) 641143 45242

Special Collections DSMZ CCUG JCM CIP KCTC

Links

Capnocytophaga granulosa B0611 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from supragingival dental plaque.

Gram-negative rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 43075

LMG 16022,ATCC 51502,CCUG 32991,CIP 104128,JCM 8566,DSM 11449,NCTC 12948,KCTC 5785

@ref 20215

Last LPSN update 2025-12-16 09:48:05

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Capnocytophaga

Species Capnocytophaga granulosa

Full scientific name Capnocytophaga granulosa Yamamoto et al. 1994

BacDive ID	Other strains from **Capnocytophaga granulosa** (7)	Type strain
135422	C. granulosa B0613, CIP 104129, ATCC 700473
142393	C. granulosa CCUG 12286, LMG 11515
142751	C. granulosa CCUG 14446, LMG 11506
142752	C. granulosa CCUG 14447, LMG 11507
149017	C. granulosa CCUG 36731, LMG 12119
165817	C. granulosa JCM 8564
165820	C. granulosa JCM 8569

Morphology

Cell morphology

@ref	Gram stain	Cell shape
119730	negative	rod-shaped
125438
125438	negative
125439	negative

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4371	CAPNOCYTOPHAGA II MEDIUM (DSMZ Medium 779)	Medium recipe at MediaDive	Name: CAPNOCYTOPHAGA II MEDIUM (DSMZ Medium 779) Composition: Agar 15.0 g/l Proteose peptone no. 3 10.0 g/l Yeast extract 5.0 g/l Na2HPO4 4.0 g/l Lab-Lemco beef extract 2.4 g/l Glucose 1.5 g/l L-Cysteine HCl x H2O 0.5 g/l Starch 0.5 g/l Horse blood Distilled water
41003	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
119730	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4371	positive	growth	37	mesophilic
41003	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
4371	facultative anaerobe
119730	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.554
125439		99.9

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119730	17632 ChEBI	nitrate	-	reduction
119730	16301 ChEBI	nitrite	-	reduction
119730	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119730	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
119730	alcohol dehydrogenase	-	1.1.1.1
119730	beta-galactosidase	+	3.2.1.23
119730	catalase	-	1.11.1.6
119730	gelatinase	-
119730	lysine decarboxylase	+	4.1.1.18
119730	ornithine decarboxylase	-	4.1.1.17
119730	oxidase	-
119730	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4371	supragingival dental plaque	Japan	JPN	Asia
67770	Supragingival dental plaque
119730	Human, Supragingival dental plaque	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence X97248 (>99% sequence identity) for Capnocytophaga granulosa subclade from Microbeatlas

Aquatic Samples	96
Soil Samples	52
Animal Samples	5351
Plant Samples	53
Total Samples	5552

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4371	2	Risk group (German classification) According to TRBA 466
119730	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	51334_C01 assembly for Capnocytophaga granulosa NCTC12948	contig	GCA_900446675	45242.4	2808606723	45242	77.07
67770	Capn_gran_ATCC_51502_V1 assembly for Capnocytophaga granulosa ATCC 51502	scaffold	GCA_000411115	641143.3	2541046980	641143	73.79
67770	IMG-taxon 2693429885 annotated assembly for Capnocytophaga granulosa DSM 11449	scaffold	GCA_900106575	45242.154	2693429885	45242	69.71

Genome browser: GCA_900446675

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	C.granulosa 16S rRNA gene	X97248	1417	641143
20218	Capnocytophaga granulosa LMG16022 T 16S ribosomal RNA gene, partial sequence	U41347	1429	641143
67770	Capnocytophaga granulosa gene for 16S ribosomal RNA, partial sequence, strain: JCM 8566	LC037222	1473	45242

GC content

@ref	GC-content (mol%)	Method
4371	42	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Capnocytophaga granulosa ATCC 51502
NCBI: GCA_000411115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	no	73.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	62.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Capnocytophaga granulosa ATCC 51502
PATRIC: 641143.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.70	no
125438	anaerobic	anaerobicⓘ	no	82.45	no
125438	aerobic	aerobicⓘ	no	78.38	yes
125438	spore-forming	spore-formingⓘ	no	91.55	no
125438	thermophilic	thermophileⓘ	no	95.13	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon.	O'Sullivan LA, Weightman AJ, Fry JC.	Appl Environ Microbiol	10.1128/aem.68.1.201-210.2002	2002
Enzymology	Isolation and characterization of aminopeptidase from Capnocytophaga granulosa ATCC 51502.	Ohishi K, Yamamoto T, Tomofuji T, Tamaki N, Watanabe T	Oral Microbiol Immunol	10.1111/j.1399-302X.2005.00183.x	2005
Phylogeny	Capnocytophaga haemolytica sp. nov. and Capnocytophaga granulosa sp. nov., from human dental plaque.	Yamamoto T, Kajiura S, Hirai Y, Watanabe T	Int J Syst Bacteriol	10.1099/00207713-44-2-324	1994

References

#4371	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11449
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41003	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119730	Collection of Institut Pasteur ; Curators of the CIP; CIP 104128
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Capnocytophaga granulosa (DSM 11449, ATCC 51502, JCM 8566)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900446675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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