Name: Capnocytophaga granulosa B0611
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5492

Type strain:

Species: Capnocytophaga granulosa

Strain Designation: B0611

Culture col. no.: DSM 11449, ATCC 51502, JCM 8566, CCUG 32991, CIP 104128, LMG 16022, NCTC 12948, KCTC 5785

Strain history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France <- T. Watanabe, Okayama Univ., Japan: strain B0611 <- T. Yamamoto, Japan

NCBI tax ID(s): 641143 (strain), 45242 (species)

SI-ID 43075

LMG 16022, ATCC 51502, CCUG 32991, CIP 104128, JCM 8566, DSM 11449, NCTC 12948, KCTC 5785

Other strains from Capnocytophaga granulosa

C. granulosa B0613, CIP 104129, ATCC 700473
C. granulosa CCUG 12286, LMG 11515
C. granulosa CCUG 14446, LMG 11506
C. granulosa CCUG 14447, LMG 11507
C. granulosa CCUG 36731, LMG 12119
C. granulosa JCM 8564
C. granulosa JCM 8569

Section

Capnocytophaga granulosa B0611 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from supragingival dental plaque.

Gram-negative
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Capnocytophaga*
	Species	**Capnocytophaga granulosa**
	Full Scientific Name (LPSN)	Capnocytophaga granulosa Yamamoto et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #119730]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #119730]	Cell shape	rod-shaped

[Ref.: #119730]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4371]

Culture medium

CAPNOCYTOPHAGA II MEDIUM (DSMZ Medium 779)

[Ref.: #4371]

Culture medium growth

[Ref.: #4371]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4371]

Culture medium composition

expand / minimize

[Ref.: #41003]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #41003]

Culture medium growth

[Ref.: #41003]

Culture medium composition

expand / minimize

[Ref.: #119730]

Culture medium

CIP Medium 45

[Ref.: #119730]

Culture medium growth

[Ref.: #119730]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #4371]	growth	37 °C
[Ref.: #41003]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #4371]	Temperature range	mesophilic
[Ref.: #41003]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4371]	Oxygen tolerance	facultative anaerobe
[Ref.: #119730]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119730]	nitrate ChEBI	-	reduction
[Ref.: #119730]	nitrite ChEBI	-	reduction
[Ref.: #119730]	sodium thiosulfate ChEBI	-	builds gas from

	Metabolite production	Metabolite	Production
[Ref.: #119730]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #119730]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #119730]	beta-galactosidase	+	3.2.1.23
[Ref.: #119730]	catalase	-	1.11.1.6
[Ref.: #119730]	gelatinase	-
[Ref.: #119730]	lysine decarboxylase	+	4.1.1.18
[Ref.: #119730]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119730]	oxidase	-
[Ref.: #119730]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4371]	Sample type/isolated from	supragingival dental plaque
[Ref.: #4371]	Country	Japan
[Ref.: #4371]	Country ISO 3 Code	JPN
[Ref.: #4371]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Supragingival dental plaque

[Ref.: #119730]	Sample type/isolated from	Human, Supragingival dental plaque
[Ref.: #119730]	Country	Japan
[Ref.: #119730]	Country ISO 3 Code	JPN
[Ref.: #119730]	Continent	Asia
[Ref.: #119730]	Isolation date	1992
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Subgingival plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X97248 (>99% sequence identity) for Capnocytophaga granulosa subclade from Microbeatlas

Aquatic Samples	96
Soil Samples	52
Animal Samples	5351
Plant Samples	53
Total Samples	5552

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4371]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119730]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Capnocytophaga granulosa gene for 16S ribosomal RNA, partial sequence, strain: JCM 8566	LC037222	1473	ENA	45242 tax ID
[Ref.: #20218]	C.granulosa 16S rRNA gene	X97248	1417	ENA	641143 tax ID	*
[Ref.: #20218]	Capnocytophaga granulosa LMG16022 T 16S ribosomal RNA gene, partial sequence	U41347	1429	ENA	641143 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Capnocytophaga granulosa DSM 11449	GCA_900106575	scaffold	GenBank	45242 tax ID
[Ref.: #67770]	Capnocytophaga granulosa NCTC12948	GCA_900446675	contig	GenBank	45242 tax ID
[Ref.: #67770]	Capnocytophaga granulosa ATCC 51502	GCA_000411115	scaffold	GenBank	641143 tax ID
[Ref.: #66792]	Capnocytophaga granulosa strain NCTC12948	45242.4	wgs	PATRIC	45242 tax ID	*
[Ref.: #66792]	Capnocytophaga granulosa ATCC 51502	2541046980	draft	JGI IMG/M	641143 tax ID	*
[Ref.: #66792]	Capnocytophaga granulosa NCTC 12948	2808606723	draft	JGI IMG/M	45242 tax ID	*

[Ref.: #4371]

GC-content

42 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Capnocytophaga granulosa ATCC 51502 PATRIC: 641143.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Capnocytophaga granulosa ATCC 51502 PATRIC: 641143.3
[Ref.: #69480]	gram-positive	no	97.891	no
[Ref.: #69480]	anaerobic	no	92.479	yes
[Ref.: #69480]	halophile	no	67.852	no
[Ref.: #69480]	spore-forming	no	95.351	no
[Ref.: #69480]	glucose-util	yes	76.686	no
[Ref.: #69480]	thermophile	no	99.427	no
[Ref.: #69480]	flagellated	no	94.015	no
[Ref.: #69480]	aerobic	no	95.275	no
[Ref.: #69480]	motile	no	89.808	no
[Ref.: #69480]	glucose-ferment	no	74.649	no

Availability in culture collections External links

[Ref.: #4371]

Culture collection no.

DSM 11449, ATCC 51502, JCM 8566, CCUG 32991, CIP 104128, LMG 16022, NCTC 12948, KCTC 5785

[Ref.: #74979]

SI-ID 43075

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Isolation and characterization of aminopeptidase from Capnocytophaga granulosa ATCC 51502.	Ohishi K, Yamamoto T, Tomofuji T, Tamaki N, Watanabe T	Oral Microbiol Immunol	10.1111/j.1399-302X.2005.00183.x	2005	*
Phylogeny	Capnocytophaga haemolytica sp. nov. and Capnocytophaga granulosa sp. nov., from human dental plaque.	Yamamoto T, Kajiura S, Hirai Y, Watanabe T	Int J Syst Bacteriol	10.1099/00207713-44-2-324	1994	*

References

#4371

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11449

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41003 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74979

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43075.1 )

#119730 Collection of Institut Pasteur ; Curators of the CIP; CIP 104128
* These data were automatically processed and therefore are not curated

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Capnocytophaga granulosa ATCC 51502

Capnocytophaga granulosa ATCC 51502

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