Name: Capnocytophaga haemolytica A0404
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5491

Type strain:

Species: Capnocytophaga haemolytica

Strain Designation: A0404

Culture col. no.: DSM 11385, ATCC 51501, JCM 8565, CCUG 32990, CIP 104125, LMG 16021, NCTC 12947, KCTC 5786

Strain history: CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France <- T. Watanabe, Okayama Univ., Japan: strain A0404 <- T. Yamamoto, Japan

NCBI tax ID(s): 45243 (species)

SI-ID 92517

LMG 16021, ATCC 51501, CCUG 32990, CIP 104125, JCM 8565, DSM 11385, NCTC 12947, KCTC 5786

Special Collections

Other strains from Capnocytophaga haemolytica

Section

Capnocytophaga haemolytica A0404 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from supragingival dental plaque.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Capnocytophaga*
	Species	**Capnocytophaga haemolytica**
	Full Scientific Name (LPSN)	Capnocytophaga haemolytica Yamamoto et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #119764]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.504

[Ref.: #119764]	Cell shape	rod-shaped

[Ref.: #119764]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

[Ref.: #119764]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4337]

Culture medium

CAPNOCYTOPHAGA II MEDIUM (DSMZ Medium 779)

[Ref.: #4337]

Culture medium growth

[Ref.: #4337]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4337]

Culture medium composition

expand / minimize

[Ref.: #38166]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #38166]

Culture medium growth

[Ref.: #38166]

Culture medium composition

expand / minimize

[Ref.: #119764]

Culture medium

CIP Medium 45

[Ref.: #119764]

Culture medium growth

[Ref.: #119764]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #4337]	growth	37 °C
[Ref.: #38166]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #119764]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4337]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %95.208
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119764]	D-glucose ChEBI	+	degradation
[Ref.: #119764]	D-xylose ChEBI	-	degradation
[Ref.: #119764]	esculin ChEBI	+	hydrolysis
[Ref.: #119764]	lactose ChEBI	+	degradation
[Ref.: #119764]	maltose ChEBI	+	degradation
[Ref.: #119764]	nitrate ChEBI	+	reduction
[Ref.: #119764]	nitrite ChEBI	-	reduction
[Ref.: #119764]	sucrose ChEBI	+	degradation

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119764]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119764]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119764]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119764]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119764]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119764]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119764]	7809	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4337]	Sample type/isolated from	supragingival dental plaque
[Ref.: #4337]	Country	Japan
[Ref.: #4337]	Country ISO 3 Code	JPN
[Ref.: #4337]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Supragingival dental plaque

[Ref.: #119764]	Sample type/isolated from	Human, Supragingival dental plaque
[Ref.: #119764]	Country	Japan
[Ref.: #119764]	Country ISO 3 Code	JPN
[Ref.: #119764]	Continent	Asia
[Ref.: #119764]	Isolation date	1992
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Subgingival plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X97247 (>99% sequence identity) for Capnocytophaga from Microbeatlas

Aquatic Samples	24
Soil Samples	7
Animal Samples	740
Plant Samples	2
Total Samples	773

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4337]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119764]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Capnocytophaga haemolytica strain A0404 16S ribosomal RNA gene, partial sequence	DQ009624	1492	GenBank ENA	45243 tax ID	*
[Ref.: #20218]	C.haemolytica 16S rRNA gene	X97247	1379	GenBank ENA	45243 tax ID	*
[Ref.: #20218]	Capnocytophaga haemolytica gene for 16S ribosomal RNA, partial sequence, strain: JCM 8565	AB671760	1479	GenBank ENA	45243 tax ID	*
[Ref.: #20218]	Capnocytophaga haemolytica LMG 16021 T 16S ribosomal RNA gene, partial sequence	U41349	1452	GenBank ENA	45243 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Capnocytophaga haemolytica DSM 11385	GCA_900115315	contig	GenBank ENA	45243 tax ID
[Ref.: #66792]	Capnocytophaga haemolytica CCUG 32990	GCA_001553545	complete	GenBank ENA	45243 tax ID	*
[Ref.: #66792]	Capnocytophaga haemolytica strain CCUG 32990	45243.3	complete	PATRIC	45243 tax ID	*
[Ref.: #66792]	Capnocytophaga haemolytica strain DSM 11385	45243.4	wgs	PATRIC	45243 tax ID	*
[Ref.: #66792]	Capnocytophaga haemolytica strain NCTC12947	45243.5	complete	PATRIC	45243 tax ID	*
[Ref.: #66792]	Capnocytophaga haemolytica NCTC 12947	2773858048	complete	JGI IMG/M	45243 tax ID	*

[Ref.: #4337]

GC-content

44 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Capnocytophaga haemolytica NCTC12947 NCBI: GCA_900187255.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Capnocytophaga haemolytica NCTC12947 NCBI: GCA_900187255.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.504	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	87.81	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	76.263	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	95.208	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.45	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #4337]

Culture collection no.

DSM 11385, ATCC 51501, JCM 8565, CCUG 32990, CIP 104125, LMG 16021, NCTC 12947, KCTC 5786

[Ref.: #74978]

SI-ID 92517

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Capnocytophaga haemolytica sp. nov. and Capnocytophaga granulosa sp. nov., from human dental plaque.	Yamamoto T, Kajiura S, Hirai Y, Watanabe T	Int J Syst Bacteriol	10.1099/00207713-44-2-324	1994	*

References

#4337

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11385

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38166 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74978

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92517.1 )

#119764 Collection of Institut Pasteur ; Curators of the CIP; CIP 104125
* These data were automatically processed and therefore are not curated

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Capnocytophaga haemolytica NCTC12947

Capnocytophaga haemolytica NCTC12947

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