Capnocytophaga haemolytica (DSM 11385, ATCC 51501, JCM 8565)

Name: Capnocytophaga haemolytica (DSM 11385, ATCC 51501, JCM 8565)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5491

Type strain

Strain Designation A0404

Culture col. no. DSM 11385 ATCC 51501 JCM 8565 A0404 CCUG 32990 4 more

NCBI tax ID(s) 45243

Special Collections DSMZ CCUG JCM CIP KCTC

History <- JCM <- T. Yamamoto, A0404 T. Yamamoto A0404. CIP <- 1994, F. Escande, Inst. Pasteur, Paris, France <- T. Watanabe, Okayama Univ., Japan: strain A0404 <- T. Yamamoto, Japan

Links

Capnocytophaga haemolytica A0404 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from supragingival dental plaque.

Gram-negative rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92517

LMG 16021,ATCC 51501,CCUG 32990,CIP 104125,JCM 8565,DSM 11385,NCTC 12947,KCTC 5786

@ref 20215

Last LPSN update 2026-02-09 11:18:58

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Capnocytophaga

Species Capnocytophaga haemolytica

Full scientific name Capnocytophaga haemolytica Yamamoto et al. 1994

BacDive ID	Other strains from **Capnocytophaga haemolytica** (3)	Type strain
135419	C. haemolytica A0405, CIP 104126
135421	C. haemolytica A0406, CIP 104127, ATCC 700051
165818	C. haemolytica JCM 8567

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119764	negative	rod-shaped
125438			93
125438	negative		96.504

Colony morphology

119764

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4337	CAPNOCYTOPHAGA II MEDIUM (DSMZ Medium 779)	Medium recipe at MediaDive	Name: CAPNOCYTOPHAGA II MEDIUM (DSMZ Medium 779) Composition: Agar 15.0 g/l Proteose peptone no. 3 10.0 g/l Yeast extract 5.0 g/l Na2HPO4 4.0 g/l Lab-Lemco beef extract 2.4 g/l Glucose 1.5 g/l L-Cysteine HCl x H2O 0.5 g/l Starch 0.5 g/l Horse blood Distilled water
38166	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
119764	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4337	positive	growth	37
38166	positive	growth	37
67770	positive	growth	37
119764	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4337	facultative anaerobe
125439	anaerobe	93.3

Spore formation

@ref	Spore formation	Confidence
125438		95.208
125439		98.3

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119764	17634 ChEBI	D-glucose	+	degradation
119764	65327 ChEBI	D-xylose	-	degradation
119764	4853 ChEBI	esculin	+	hydrolysis
119764	17716 ChEBI	lactose	+	degradation
119764	17306 ChEBI	maltose	+	degradation
119764	17632 ChEBI	nitrate	+	reduction
119764	16301 ChEBI	nitrite	-	reduction
119764	17992 ChEBI	sucrose	+	degradation

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119764	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119764	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119764	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119764	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119764	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
119764	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119764	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
4337	supragingival dental plaque	Japan	JPN	Asia
67770	Supragingival dental plaque
119764	Human, Supragingival dental plaque	Japan	JPN	Asia	1992

Taxonmaps

69479

Global distribution of 16S sequence X97247 (>99% sequence identity) for Capnocytophaga from Microbeatlas

Aquatic Samples	24
Soil Samples	7
Animal Samples	740
Plant Samples	2
Total Samples	773

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4337	2	Risk group (German classification) According to TRBA 466
119764	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	51184_F02 assembly for Capnocytophaga haemolytica NCTC12947	complete	GCA_900187255	45243.5	2773858048	45243	97.82
66792	ASM155354v1 assembly for Capnocytophaga haemolytica CCUG 32990	complete	GCA_001553545	45243.3	2687453164	45243	97.78
67770	IMG-taxon 2693429878 annotated assembly for Capnocytophaga haemolytica DSM 11385	contig	GCA_900115315	45243.4	2693429878	45243	70.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Capnocytophaga haemolytica strain A0404 16S ribosomal RNA gene, partial sequence	DQ009624	1492	45243
20218	C.haemolytica 16S rRNA gene	X97247	1379	45243
20218	Capnocytophaga haemolytica gene for 16S ribosomal RNA, partial sequence, strain: JCM 8565	AB671760	1479	45243
20218	Capnocytophaga haemolytica LMG 16021 T 16S ribosomal RNA gene, partial sequence	U41349	1452	45243

GC content

@ref	GC-content (mol%)	Method
4337	44	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Capnocytophaga haemolytica NCTC12947
NCBI: GCA_900187255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	no	86.10	no
125439	gram_stain	BacteriaNetⓘ	positive	74.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	93.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Capnocytophaga haemolytica NCTC12947
NCBI: GCA_900187255.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	87.81	yes
125438	aerobic	aerobicⓘ	no	76.26	yes
125438	spore-forming	spore-formingⓘ	no	95.21	no
125438	thermophilic	thermophileⓘ	no	93.45	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Capnocytophaga haemolytica sp. nov. and Capnocytophaga granulosa sp. nov., from human dental plaque.	Yamamoto T, Kajiura S, Hirai Y, Watanabe T	Int J Syst Bacteriol	10.1099/00207713-44-2-324	1994

References

#4337	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11385
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38166	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119764	Collection of Institut Pasteur ; Curators of the CIP; CIP 104125
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Capnocytophaga haemolytica (DSM 11385, ATCC 51501, JCM 8565)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900187255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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