Arenibacter latericius | Type strain | DSM 15913, CCUG 45454, CIP 106861, JCM 13508, KMM 426, LMG 19693, VKM B-2137D, LMG 19694 | BacDiveID:5481

Strain identifier

BacDive ID: 5481

Type strain:

Species: Arenibacter latericius

Culture col. no.: DSM 15913, CCUG 45454, CIP 106861, JCM 13508, KMM 426, LMG 19693, VKM B-2137D, LMG 19694

Strain history: CIP <- 2000, E. Ivanova, Russian Academy Sci., Vladivostok, Russia <- O.I. Nedashkovskaya

NCBI tax ID(s): 1121012 (strain), 86104 (species)

SI-ID 264388

LMG 19693, CIP 106861, KCTC 12957, CCUG 45454, NCIMB 13883, DSM 15913, JCM 13508

Section

Arenibacter latericius DSM 15913 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sandy sediment samples.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Arenibacter*
	Species	**Arenibacter latericius**
	Full Scientific Name (LPSN)	Arenibacter latericius Ivanova et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #120568]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.948

[Ref.: #120568]	Cell shape	rod-shaped

[Ref.: #120568]	Motility	no

[Ref.: #120568]	Pigment production	no
[Ref.: #120568]	Pigment name	Flexirubin

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

Marine agar (MA)

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #120568]

Culture medium

CIP Medium 13

[Ref.: #120568]

Culture medium growth

[Ref.: #120568]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6180]			growth	28 °C
[Ref.: #39596]			growth	30 °C
[Ref.: #56790]			growth	25-37 °C
[Ref.: #67770]			growth	25 °C
[Ref.: #120568]			growth	15-41 °C
[Ref.: #120568]		no	growth	5 °C
[Ref.: #120568]		no	growth	45 °C

[Ref.: #6180]	Temperature range	mesophilic
[Ref.: #39596]	Temperature range	mesophilic
[Ref.: #56790]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120568]	Temperature range	psychrophilic
[Ref.: #120568]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #56790]	Oxygen tolerance	aerobe
[Ref.: #120568]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120568]		NaCl	no	growth	0	%
[Ref.: #120568]		NaCl	no	growth	2	%
[Ref.: #120568]		NaCl	no	growth	4	%
[Ref.: #120568]		NaCl	no	growth	6	%
[Ref.: #120568]		NaCl	no	growth	8	%
[Ref.: #120568]		NaCl	no	growth	10	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120568]		esculin ChEBI	+	hydrolysis
[Ref.: #120568]		hippurate ChEBI	+	hydrolysis
[Ref.: #120568]		malonate ChEBI	-	assimilation
[Ref.: #120568]		nitrate ChEBI	+	reduction
[Ref.: #120568]		nitrate ChEBI	-	respiration
[Ref.: #120568]		nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120568]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #120568]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120568]		acetoin ChEBI	-
[Ref.: #120568]		glucose ChEBI		+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120568]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #120568]		amylase	-
[Ref.: #120568]		beta-galactosidase	+	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120568]		caseinase	-	3.4.21.50
[Ref.: #120568]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120568]		DNase	+
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #120568]		gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120568]		gelatinase	+/-
[Ref.: #120568]		lecithinase	-
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120568]		lipase	-
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #120568]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120568]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #120568]		oxidase	+
[Ref.: #120568]		phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #120568]		tryptophan deaminase	-
[Ref.: #120568]		tween esterase	-
[Ref.: #120568]		urease	+	3.5.1.5
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120568]	1884	not determinedn.d.	+	+	+	+	+	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120568]	9869	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6180]	Sample type/isolated from	sandy sediment samples
[Ref.: #6180]	Geographic location (country and/or sea, region)	South China Sea in the Indian Ocean
[Ref.: #6180]	Continent	Asia

[Ref.: #56790]	Sample type/isolated from	Sandy sediments,holothurian,brown alga

[Ref.: #67770]	Sample type/isolated from	Sandy sediment samples

[Ref.: #120568]	Sample type/isolated from	Environment, Sandy sediments
[Ref.: #120568]	Geographic location (country and/or sea, region)	Cu Lao Re Island, Indian Ocean
[Ref.: #120568]	Country	Vietnam
[Ref.: #120568]	Country ISO 3 Code	VNM
[Ref.: #120568]	Continent	Asia
[Ref.: #120568]	Isolation date	1988
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Global distribution of 16S sequence AF052742 (>99% sequence identity) for Arenibacter from Microbeatlas

Aquatic Samples	132
Soil Samples	4
Animal Samples	38
Plant Samples	1
Total Samples	175

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6180]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120568]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6180]	Arenibacter latericius strain KMM 426 16S ribosomal RNA gene, partial sequence	AF052742	1444	ENA	86104 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Arenibacter latericius DSM 15913	GCA_000424985	scaffold	GenBank	1121012 tax ID
[Ref.: #66792]	Arenibacter latericius DSM 15913	1121012.3	wgs	PATRIC	1121012 tax ID	*
[Ref.: #66792]	Arenibacter latericius DSM 15913	2524614597	draft	JGI IMG/M	1121012 tax ID	*

[Ref.: #6180]	GC-content	36.8 mol%	sequence analysis
[Ref.: #67770]	GC-content	37.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arenibacter latericius DSM 15913 DSM 15913 NCBI: GCA_000424985.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arenibacter latericius DSM 15913 PATRIC: 1121012.3
[Ref.: #69480]	motile	no	90.2	no
[Ref.: #69480]	flagellated	no	96.057	no
[Ref.: #69480]	gram-positive	no	97.507	no
[Ref.: #69480]	anaerobic	no	99.447	no
[Ref.: #69480]	aerobic	yes	89.566	no
[Ref.: #69480]	halophile	no	57.715	no
[Ref.: #69480]	spore-forming	no	95.991	no
[Ref.: #69480]	thermophile	no	99.512	yes
[Ref.: #69480]	glucose-util	yes	90.101	no
[Ref.: #69480]	glucose-ferment	no	88.139	no

Availability in culture collections External links

Culture collection no.

DSM 15913, CCUG 45454, CIP 106861, JCM 13508, KMM 426, LMG 19693, VKM B-2137D, LMG 19694

SI-ID 264388

*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenibacter amylolyticus sp. nov., an amylase-producing bacterium of the family Flavobacteriaceae isolated from marine water in India.	Sidhu C, Saini MK, Srinivas Tanuku NR, Pinnaka AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.004664	2021	*
Phylogeny	Arenibacter lacus sp. nov., Isolated from Chilika Lagoon, India.	Kumar D, Smita N, Kumar G, Suresh G, Jagadeeshwari U, Sasikala C, Ramana CV	Curr Microbiol	10.1007/s00284-020-02205-x	2020	*
Metabolism	Effect of Pentacyclic Guanidine Alkaloids from the Sponge Monanchora pulchra on Activity of alpha-Glycosidases from Marine Bacteria.	Bakunina I, Likhatskaya G, Slepchenko L, Balabanova L, Tekutyeva L, Son O, Shubina L, Makarieva T	Mar Drugs	10.3390/md17010022	2019	*
Phylogeny	Arenibacter antarcticus sp. nov., isolated from marine sediment.	Li AZ, Lin LZ, Zhang MX, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002340	2017	*
Enzymology	Alpha-N-acetylgalactosaminidase from marine bacterium Arenibacter latericius KMM 426T removing blood type specificity of A-erythrocytes.	Bakunina IY, Kuhlmann RA, Likhosherstov LM, Martynova MD, Nedashkovskaya OI, Mikhailov VV, Elyakova LA	Biochemistry (Mosc)	10.1023/a:1016106623655	2002	*
Phylogeny	Arenibacter gen. nov., new genus of the family flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov.	Ivanova EP, Nedashkovskaya OI, Chun J, Lysenko AM, Frolova GM, Svetashev VI, Vysotskii MV, Mikhailov VV, Huq A, Colwell RR	Int J Syst Evol Microbiol	10.1099/00207713-51-6-1987	2001	*
	Recombinant alpha-NAcetylgalactosaminidase from Marine Bacterium-Modifying A Erythrocyte Antigens.	Balabanova LA, Golotin VA, Bakunina IY, Slepchenko LV, Isakov VV, Podvolotskaya AB, Rasskazov VA	Acta Naturae		2015	*

References

#6180

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15913

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39596 ; Curators of the CIP;
#56790 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45454

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74968

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264388.1 )

#120568 Collection of Institut Pasteur ; Curators of the CIP; CIP 106861
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.