Arenibacter palladensis (CCUG 48011, DSM 17539, CIP 108849)

Name: Arenibacter palladensis (CCUG 48011, DSM 17539, CIP 108849)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5482

Type strain

Strain Designation PIBOC FEBRAS

Culture col. no. CCUG 48011 DSM 17539 CIP 108849 JCM 13509 KMM 3961 3 more

NCBI tax ID(s) 237373

Special Collections DSMZ CCUG JCM CIP Literature strains

History DSMZ <- O. I. Nedashkovskaya, RAS, Pacific Inst. Bioorg. Chem.; KMM 3961 <- L. S. Shevchenko JCM <-- KMM 3961 <-- O. I. Nedashkovskaya <-- L. S. Shevchenko. CIP <- 2005, KMM <- L.S. Shevchenko: strain PIBOC FEBRAS

Links

Arenibacter palladensis PIBOC FEBRAS is an aerobe, Gram-negative, motile bacterium that was isolated from green alga Ulva fenestrata.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 93607

LMG 21972,CIP 108849,JCM 13509,DSM 17539,CCUG 48011

@ref 20215

Last LPSN update 2026-05-29 08:26:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Arenibacter

Species Arenibacter palladensis

Full scientific name Arenibacter palladensis Nedashkovskaya et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
31609	negative	1.6-2.3 µm	0.4-0.5 µm	rod-shaped	gliding
121506	negative			rod-shaped
125439	negative					97.739
125438						92.5
125438	negative					97.231

Colony morphology

@ref	Incubation period	Hemolysis ability
57950	2 days
121506		0

Pigmentation

@ref	Production	Name
31609
121506		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7052	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
38336	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
121506	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7052	positive	growth	28
31609	positive	growth	04-38
31609	positive	optimum	23-25
38336	positive	growth	25
57950	positive	growth	30
67770	positive	growth	25
121506	positive	growth	5-37
121506	negative	growth	41
121506	negative	growth	45

Culture pH

@ref	Ability	Type	PH
31609	positive	optimum	7
31609	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31609	aerobe
57950	aerobe
125439	facultative anaerobe	90.948

Spore formation

@ref	Spore formation	Confidence
31609
125439		98.606
125438		91.833

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31609	NaCl	positive	growth	0-10 %
31609	NaCl	positive	optimum	0-10 %
121506	NaCl	positive	growth	0-10 %

Observation

@ref	Observation
31609	aggregates in chains
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
31609	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
31609	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
31609	23652 ChEBI	dextrin	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
121506	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31609	28757 ChEBI	fructose	+	carbon source
31609	33984 ChEBI	fucose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31609	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31609	17234 ChEBI	glucose	+	carbon source
31609	29987 ChEBI	glutamate	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
121506	606565 ChEBI	hippurate	-	hydrolysis
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
31609	24996 ChEBI	lactate	+	carbon source
31609	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
121506	15792 ChEBI	malonate	+	assimilation
31609	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31609	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
31609	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31609	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121506	17632 ChEBI	nitrate	-	reduction
121506	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31609	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31609	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
31609	26986 ChEBI	threonine	+	carbon source
31609	27082 ChEBI	trehalose	+	carbon source
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121506	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
121506	15688 ChEBI	acetoin	+
121506	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121506	alcohol dehydrogenase	-	1.1.1.1
31609	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
121506	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
121506	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121506	caseinase	-	3.4.21.50
31609	catalase	+	1.11.1.6
121506	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31609	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
121506	gamma-glutamyltransferase	+	2.3.2.2
121506	gelatinase	-
121506	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
121506	lipase	-
68382	lipase (C 14)	-		from API zym
121506	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121506	ornithine decarboxylase	-	4.1.1.17
121506	oxidase	-
121506	phenylalanine ammonia-lyase	-	4.3.1.24
121506	protease	-
68382	trypsin	-	3.4.21.4	from API zym
121506	tryptophan deaminase	-
121506	tween esterase	+
121506	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121506	-	+	-	-	-	+	+	-	-	-	+	+	-	+	-	+	+	+	+	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121506	not determinedn.d.	-	-	+	+/-	-	+	+/-	-	+/-	+	+	+	+	-	+/-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+/-	+/-	-	+	-	-	-	+	+	-	-	-	+	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121506	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Green algae

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Continent	Host species	Isolation date
7052	green alga Ulva fenestrata		Sea of Japan, Pallada Bay		Asia	Ulva fenestrata
57950	Green alga (Ulva fenestrata)	2000-06-01	Pallada Bay	Sea of Japan	Asia
67770	Green alga, Ulva fenestrata		Pallada Bay			Ulva fenestrata
121506	Green alga, Ulva fenestrata		Pallada bay	Sea of Japan			1999

Taxonmaps

69479

Global distribution of 16S sequence AJ575643 (>99% sequence identity) for Arenibacter from Microbeatlas

Aquatic Samples	7063
Soil Samples	1235
Animal Samples	925
Plant Samples	168
Total Samples	9391

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7052	1	Risk group (German classification) According to TRBA 466
121506	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2634166303 annotated assembly for Arenibacter palladensis DSM 17539	scaffold	GCA_900129275	237373.5	2634166303	237373	60.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7052	Arenibacter palladensis 16S rRNA gene, type strain LMG 21972T	AJ575643	1476		237373

GC content

67770

GC-content (mol%)39-40

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2634166303 annotated assembly for Arenibacter palladensis DSM 17539
NCBI: GCA_900129275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.95	no
125439	gram_stain	BacteriaNetⓘ	negative	97.74	no
125439	motility	BacteriaNetⓘ	no	72.15	no
125439	spore_formation	BacteriaNetⓘ	no	98.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arenibacter palladensis strain DSM 17539
PATRIC: 237373.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.23	yes
125438	anaerobic	anaerobicⓘ	no	97.50	yes
125438	spore-forming	spore-formingⓘ	no	91.83	yes
125438	aerobic	aerobicⓘ	yes	88.59	yes
125438	thermophilic	thermophileⓘ	no	98.19	yes
125438	flagellated	motile2+ⓘ	no	92.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	A Review of Bioelectrochemical Strategies for Enhanced Polyhydroxyalkanoate Production.	Chamizo-Ampudia A, Alonso RM, Ariza-Carmona L, Sanchiz A, San-Martin MI.	Bioengineering (Basel)	10.3390/bioengineering12060616	2025
	Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel_I_6 consumes alpha-mannan from fungi.	Solanki V, Kruger K, Crawford CJ, Pardo-Vargas A, Danglad-Flores J, Hoang KLM, Klassen L, Abbott DW, Seeberger PH, Amann RI, Teeling H, Hehemann JH.	ISME J	10.1038/s41396-022-01223-w	2022
Metabolism	Comparative analysis of glycoside hydrolases activities from phylogenetically diverse marine bacteria of the genus Arenibacter.	Bakunina I, Nedashkovskaya O, Balabanova L, Zvyagintseva T, Rasskasov V, Mikhailov V.	Mar Drugs	10.3390/md11061977	2013
Enzymology	Algae-bacteria association inferred by 16S rDNA similarity in established microalgae cultures.	Schwenk D, Nohynek L, Rischer H.	Microbiologyopen	10.1002/mbo3.175	2014
	Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis.	Blasiak LC, Zinder SH, Buckley DH, Hill RT.	ISME J	10.1038/ismej.2013.156	2014
Metabolism	Structure of the O-specific polysaccharide of the marine bacterium Arenibacter palladensis KMM 3961(T) containing 2-acetamido-2-deoxy-l-galacturonic acid.	Tomshich SV, Isakov VV, Komandrova NA, Shevchenko LS	Biochemistry (Mosc)	10.1134/S0006297912010105	2012
Phylogeny	Arenibacter aquaticus sp. nov., a marine bacterium isolated from surface sea water in the South China Sea.	Guo J, Sun J, Xu Y, Fang L, Jiao N, Zhang R.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003855	2020
Genetics	Arenibacter arenosicollis sp. nov., isolated from a sand dune.	Park S, Lee SY, Lee JS, Kim W, Yoon JH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004709	2019
Phylogeny	Spongiimicrobium salis gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae isolated from a marine sponge.	Yoon J, Adachi K, Kasai H	Arch Microbiol	10.1007/s00203-016-1227-3	2016
Phylogeny	Arenibacter hampyeongensis sp. nov., a marine bacterium isolated from a tidal flat.	Jeong SH, Jin HM, Kim JM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.040683-0	2012
Phylogeny	Arenibacter palladensis sp. nov., a novel marine bacterium isolated from the green alga Ulva fenestrata, and emended description of the genus Arenibacter.	Nedashkovskaya OI, Vancanneyt M, Cleenwerck I, Snauwaert C, Kim SB, Lysenko AM, Shevchenko LS, Lee KH, Park MS, Frolova GM, Mikhailov VV, Bae KS, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63893-0	2006

References

#7052	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17539
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27897	IJSEM 155 2006 ( DOI 10.1099/ijs.0.63893-0 , PubMed 16403881 )
#31609	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27897
#38336	; Curators of the CIP;
#57950	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48011
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121506	Collection of Institut Pasteur ; Curators of the CIP; CIP 108849
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Arenibacter palladensis (CCUG 48011, DSM 17539, CIP 108849)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900129275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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