Name: Arenibacter palladensis PIBOC FEBRAS
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5482

Type strain:

Species: Arenibacter palladensis

Strain Designation: PIBOC FEBRAS

Culture col. no.: CCUG 48011, DSM 17539, CIP 108849, JCM 13509, KMM 3961, LMG 21972, NCIMB 14299

Strain history: CIP <- 2005, KMM <- L.S. Shevchenko: strain PIBOC FEBRAS

NCBI tax ID(s): 237373 (species)

SI-ID 93607

LMG 21972, CIP 108849, JCM 13509, DSM 17539, CCUG 48011

Section

Arenibacter palladensis PIBOC FEBRAS is an aerobe, mesophilic, Gram-negative bacterium that was isolated from green alga Ulva fenestrata.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Arenibacter*
	Species	**Arenibacter palladensis**
	Full Scientific Name (LPSN)	Arenibacter palladensis Nedashkovskaya et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31609]	Gram stain	negative
[Ref.: #121506]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #31609]	Cell length	1.6-2.3 µm

[Ref.: #31609]	Cell width	0.4-0.5 µm

[Ref.: #31609]	Cell shape	rod-shaped
[Ref.: #121506]	Cell shape	rod-shaped

[Ref.: #31609]	Motility	yes
[Ref.: #121506]	Motility	no

[Ref.: #31609]	Flagellum arrangement	gliding

[Ref.: #57950]

Incubation period

2 days

[Ref.: #31609]	Pigment production	yes
[Ref.: #121506]	Pigment production	no
[Ref.: #121506]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7052]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7052]

Culture medium growth

[Ref.: #7052]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7052]

Culture medium composition

expand / minimize

[Ref.: #38336]

Culture medium

Marine agar (MA)

[Ref.: #38336]

Culture medium growth

[Ref.: #38336]

Culture medium composition

expand / minimize

[Ref.: #121506]

Culture medium

CIP Medium 13

[Ref.: #121506]

Culture medium growth

[Ref.: #121506]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7052]		growth	28 °C
[Ref.: #31609]		growth	04-38 °C
[Ref.: #31609]		optimum	23-25 °C
[Ref.: #38336]		growth	25 °C
[Ref.: #57950]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #121506]		growth	5-37 °C
[Ref.: #121506]	no	growth	41 °C
[Ref.: #121506]	no	growth	45 °C

[Ref.: #7052]	Temperature range	mesophilic
[Ref.: #38336]	Temperature range	mesophilic
[Ref.: #57950]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #121506]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31609]			optimum	7
[Ref.: #31609]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31609]	Oxygen tolerance	aerobe
[Ref.: #57950]	Oxygen tolerance	aerobe

[Ref.: #31609]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Salt		Salt conc.
[Ref.: #31609]	NaCl	growth	0-10	%
[Ref.: #31609]	NaCl	optimum	0-10	%
[Ref.: #121506]	NaCl	growth	0-10	%

[Ref.: #31609]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31609]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31609]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31609]	dextrin ChEBI	+	carbon source
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121506]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31609]	fructose ChEBI	+	carbon source
[Ref.: #31609]	fucose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	glucose ChEBI	+	carbon source
[Ref.: #31609]	glutamate ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121506]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	lactate ChEBI	+	carbon source
[Ref.: #31609]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121506]	malonate ChEBI	+	assimilation
[Ref.: #31609]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31609]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121506]	nitrate ChEBI	-	reduction
[Ref.: #121506]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31609]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31609]	threonine ChEBI	+	carbon source
[Ref.: #31609]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121506]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121506]		acetoin ChEBI	+
[Ref.: #121506]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121506]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31609]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #121506]	amylase	-
[Ref.: #121506]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121506]	caseinase	-	3.4.21.50
[Ref.: #31609]	catalase	+	1.11.1.6
[Ref.: #121506]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31609]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #121506]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #121506]	gelatinase	-
[Ref.: #121506]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121506]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121506]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121506]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121506]	oxidase	-
[Ref.: #121506]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #121506]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121506]	tryptophan deaminase	-
[Ref.: #121506]	tween esterase	+
[Ref.: #121506]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121506]	11402	not determinedn.d.	-	-	+	+/-	-	+	+/-	-	+/-	+	+	+	+	-	+/-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+/-	+/-	-	+	-	-	-	+	+	-	-	-	+	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121506]	2932	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121506]	11507	-	+	-	-	-	+	+	-	-	-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7052]	Sample type/isolated from	green alga Ulva fenestrata
[Ref.: #7052]	Host species	Ulva fenestrata
[Ref.: #7052]	Geographic location (country and/or sea, region)	Sea of Japan, Pallada Bay
[Ref.: #7052]	Continent	Asia

[Ref.: #57950]	Sample type/isolated from	Green alga (Ulva fenestrata)
[Ref.: #57950]	Sampling date	2000-06-01
[Ref.: #57950]	Geographic location (country and/or sea, region)	Pallada Bay
[Ref.: #57950]	Country	Sea of Japan
[Ref.: #57950]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Green alga, Ulva fenestrata
[Ref.: #67770]	Host species	Ulva fenestrata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pallada Bay

[Ref.: #121506]	Sample type/isolated from	Green alga, Ulva fenestrata
[Ref.: #121506]	Geographic location (country and/or sea, region)	Pallada bay
[Ref.: #121506]	Country	Sea of Japan
[Ref.: #121506]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Green algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ575643 (>99% sequence identity) for Arenibacter from Microbeatlas

Aquatic Samples	7063
Soil Samples	1235
Animal Samples	925
Plant Samples	168
Total Samples	9391

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7052]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121506]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7052]	Arenibacter palladensis 16S rRNA gene, type strain LMG 21972T	AJ575643	1476	ENA	237373 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Arenibacter palladensis DSM 17539	GCA_900129275	scaffold	GenBank	237373 tax ID
[Ref.: #66792]	Arenibacter palladensis strain DSM 17539	237373.5	wgs	PATRIC	237373 tax ID	*
[Ref.: #66792]	Arenibacter palladensis DSM 17539	2634166303	draft	JGI IMG/M	237373 tax ID	*

[Ref.: #67770]

GC-content

39-40 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arenibacter palladensis DSM 17539 NCBI: GCA_900129275.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arenibacter palladensis strain DSM 17539 PATRIC: 237373.5
[Ref.: #69480]	motile	no	87.767	no
[Ref.: #69480]	gram-positive	no	98.126	yes
[Ref.: #69480]	anaerobic	no	99.733	yes
[Ref.: #69480]	aerobic	yes	93.648	no
[Ref.: #69480]	halophile	no	84.422	no
[Ref.: #69480]	spore-forming	no	97.003	yes
[Ref.: #69480]	glucose-util	yes	90.887	yes
[Ref.: #69480]	flagellated	no	95.136	yes
[Ref.: #69480]	thermophile	no	99.4	no
[Ref.: #69480]	glucose-ferment	no	90.208	no

Availability in culture collections External links

[Ref.: #7052]

Culture collection no.

CCUG 48011, DSM 17539, CIP 108849, JCM 13509, KMM 3961, LMG 21972, NCIMB 14299

[Ref.: #74969]

SI-ID 93607

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spongiimicrobium salis gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae isolated from a marine sponge.	Yoon J, Adachi K, Kasai H	Arch Microbiol	10.1007/s00203-016-1227-3	2016	*
Phylogeny	Arenibacter hampyeongensis sp. nov., a marine bacterium isolated from a tidal flat.	Jeong SH, Jin HM, Kim JM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.040683-0	2012	*
Metabolism	Structure of the O-specific polysaccharide of the marine bacterium Arenibacter palladensis KMM 3961(T) containing 2-acetamido-2-deoxy-l-galacturonic acid.	Tomshich SV, Isakov VV, Komandrova NA, Shevchenko LS	Biochemistry (Mosc)	10.1134/S0006297912010105	2012	*
Phylogeny	Arenibacter palladensis sp. nov., a novel marine bacterium isolated from the green alga Ulva fenestrata, and emended description of the genus Arenibacter.	Nedashkovskaya OI, Vancanneyt M, Cleenwerck I, Snauwaert C, Kim SB, Lysenko AM, Shevchenko LS, Lee KH, Park MS, Frolova GM, Mikhailov VV, Bae KS, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63893-0	2006	*

References

#7052

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17539

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31609

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27897 (see below)

#38336 ; Curators of the CIP;
#57950 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48011

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74969

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93607.1 )

#121506 Collection of Institut Pasteur ; Curators of the CIP; CIP 108849

#27897

IJSEM 155 2006 ( DOI 10.1099/ijs.0.63893-0 , PubMed 16403881 )

* These data were automatically processed and therefore are not curated

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Arenibacter palladensis DSM 17539

Arenibacter palladensis strain DSM 17539

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