Name: Flammeovirga aprica DUB4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5462

Type strain:

Species: Flammeovirga aprica

Strain Designation: DUB4

Culture col. no.: DSM 3659, ATCC 23132, NCMB 1411, JCM 21139, IAM 14299, NCIMB 1411, CIP 104807, ATCC 23126, IAM 14298, IFO 15941

Strain history: CIP <- 2001, IFO, Japan <- IAM <- ATCC <- R.A. Lewin: strain JL-4, Cytophaga diffluens subsp. aprica

NCBI tax ID(s): 694437 (strain), 29528 (species)

SI-ID 356290

ATCC 23132, DSM 3659, NCIMB 1411, LMG 8386, NCMB 1411, IAM 14299, JCM 21139

Other strains from Flammeovirga aprica

F. aprica JCM 21138, ATCC 23126, CIP 104807, ... (type strain)

Section

Flammeovirga aprica DUB4 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from marine mud.

Gram-negative
rod-shaped
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flammeovirgaceae*
	Genus	*Flammeovirga*
	Species	**Flammeovirga aprica**
	Full Scientific Name (LPSN)	Flammeovirga aprica (Reichenbach 1989 ex Lewin 1969) Nakagawa et al. 1997

Synonym

Cytophaga aprica

Information on morphological and physiological properties Morphology

[Ref.: #116484]	Gram stain	negative

[Ref.: #116484]	Cell shape	rod-shaped

[Ref.: #116484]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1443]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #1443]

Culture medium growth

[Ref.: #1443]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1443]

Culture medium composition

expand / minimize

[Ref.: #1443]

Culture medium

CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)

[Ref.: #1443]

Culture medium growth

[Ref.: #1443]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1443]

Culture medium composition

expand / minimize

[Ref.: #39761]

Culture medium

MEDIUM 168 - for Cytophaga latercula and Flammeovirga aprica

[Ref.: #39761]

Culture medium growth

[Ref.: #39761]

Culture medium composition

expand / minimize

[Ref.: #116484]

Culture medium

CIP Medium 168

[Ref.: #116484]

Culture medium growth

[Ref.: #116484]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116484]

Culture medium

CIP Medium 231

[Ref.: #116484]

Culture medium growth

[Ref.: #116484]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1443]		growth	25 °C
[Ref.: #1443]		growth	20-25 °C
[Ref.: #39761]		growth	25 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #116484]		growth	15-37 °C
[Ref.: #116484]	no	growth	5 °C
[Ref.: #116484]	no	growth	41 °C
[Ref.: #116484]	no	growth	45 °C

[Ref.: #1443]	Temperature range	mesophilic
[Ref.: #39761]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116484]	Temperature range	psychrophilic
[Ref.: #116484]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #116484]	NaCl		growth	2-4	%
[Ref.: #116484]	NaCl	no	growth	0	%
[Ref.: #116484]	NaCl	no	growth	6	%
[Ref.: #116484]	NaCl	no	growth	8	%
[Ref.: #116484]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116484]	hippurate ChEBI	-	hydrolysis
[Ref.: #116484]	nitrate ChEBI	-	reduction
[Ref.: #116484]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116484]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116484]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116484]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116484]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116484]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116484]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #116484]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116484]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116484]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116484]	oxidase	+
[Ref.: #116484]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116484]	tryptophan deaminase	-
[Ref.: #116484]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116484]	8214	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1443]	Sample type/isolated from	marine mud
[Ref.: #1443]	Geographic location (country and/or sea, region)	Dubrovnik
[Ref.: #1443]	Country	Yugoslavia
[Ref.: #1443]	Country ISO 3 Code	HRV
[Ref.: #1443]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Beach mud
[Ref.: #67770]	Geographic location (country and/or sea, region)	Dubrovnik
[Ref.: #67770]	Country	Croatia
[Ref.: #67770]	Country ISO 3 Code	HRV
[Ref.: #67770]	Continent	Europe

[Ref.: #116484]	Sample type/isolated from	Environment, Rocky sand
[Ref.: #116484]	Geographic location (country and/or sea, region)	Kailua, Hawaii
[Ref.: #116484]	Country	United States of America
[Ref.: #116484]	Country ISO 3 Code	USA
[Ref.: #116484]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1443]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116484]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #1443]

GC-content

36.7 mol%

Availability in culture collections External links

[Ref.: #1443]

Culture collection no.

DSM 3659, ATCC 23132, NCMB 1411, JCM 21139, IAM 14299, NCIMB 1411, CIP 104807, ATCC 23126, IAM 14298, IFO 15941

[Ref.: #74950]

SI-ID 356290

References

#1443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3659

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39761 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#74950

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID356290.1 )

#116484 Collection of Institut Pasteur ; Curators of the CIP; CIP 104807
* These data were automatically processed and therefore are not curated

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