Name: Flammeovirga aprica JCM 21138
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163089

Type strain:

Species: Flammeovirga aprica

Culture col. no.: JCM 21138, ATCC 23126, CIP 104807, IAM 14298, IFO 15941, NBRC 15941, NRRL B-14729

Strain history: IAM 14298 <-- ATCC 23126 <-- R. A. Lewin JL-4 ("Cytophaga diffluens subsp. aprica").

NCBI tax ID(s): 29528 (species)

SI-ID 92596

LMG 8370, ATCC 23126, CIP 104807, IAM 14298, IFO 15941, NCIMB 13348, NBRC 15941, NRRL B-14729, JCM 21138

Other strains from Flammeovirga aprica

F. aprica DUB4, DSM 3659, ATCC 23132, NCMB ...

Section

Flammeovirga aprica JCM 21138 is a mesophilic bacterium that was isolated from Rocky sand.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flammeovirgaceae*
	Genus	*Flammeovirga*
	Species	**Flammeovirga aprica**
	Full Scientific Name (LPSN)	Flammeovirga aprica (Reichenbach 1989 ex Lewin 1969) Nakagawa et al. 1997

Synonym

Cytophaga aprica

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rocky sand
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kailua, HI
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flammeovirga aprica gene for 16S ribosomal RNA, partial sequence	AB247553	1452	ENA	694437 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flammeovirga aprica JL-4 ATCC 23126	GCA_012844305	scaffold	GenBank	694437 tax ID
[Ref.: #66792]	Flammeovirga aprica JL-4 strain ATCC 23126	694437.4	wgs	PATRIC	694437 tax ID	*
[Ref.: #66792]	Flammeovirga aprica ATCC 23126	2892985999	draft	JGI IMG/M	29528 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flammeovirga aprica JL-4 strain ATCC 23126 PATRIC: 694437.4
[Ref.: #69480]	gram-positive	no	97.937	no
[Ref.: #69480]	anaerobic	no	96.245	no
[Ref.: #69480]	halophile	no	78.294	no
[Ref.: #69480]	spore-forming	no	88.099	no
[Ref.: #69480]	glucose-util	yes	88.195	no
[Ref.: #69480]	thermophile	no	97.811	yes
[Ref.: #69480]	flagellated	no	93.309	no
[Ref.: #69480]	aerobic	yes	77.788	no
[Ref.: #69480]	motile	no	86.199	no
[Ref.: #69480]	glucose-ferment	no	78.354	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 21138, ATCC 23126, CIP 104807, IAM 14298, IFO 15941, NBRC 15941, NRRL B-14729

[Ref.: #113856]

SI-ID 92596

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113856

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92596.1 )

* These data were automatically processed and therefore are not curated

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Flammeovirga aprica JL-4 strain ATCC 23126

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