Name: Ferrimonas senticii P2S11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5458

Type strain:

Species: Ferrimonas senticii

Strain Designation: P2S11

Culture col. no.: DSM 18821, ATCC BAA-1480

Strain history: <- S. Campbell, Dept. Molecular Biosci. and Bioengineering, Univ. Hawai‘i at Manoa, Honolulu; P2S11

NCBI tax ID(s): 1121880 (strain), 394566 (species)

SI-ID 396754

DSM 18821

Section

Ferrimonas senticii P2S11 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from slime of a puffer fish Arothron hispidus.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Ferrimonadaceae*
	Genus	*Ferrimonas*
	Species	**Ferrimonas senticii**
	Full Scientific Name (LPSN)	Ferrimonas senticii Campbell et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32174]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.959

[Ref.: #32174]	Cell length	1.7 µm

[Ref.: #32174]	Cell shape	rod-shaped

[Ref.: #32174]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %95.391

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7713]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7713]

Culture medium growth

[Ref.: #7713]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7713]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7713]	growth	30 °C
[Ref.: #32174]	growth	20-37 °C
[Ref.: #32174]	optimum	28.5 °C

[Ref.: #7713]	Temperature range	mesophilic
[Ref.: #32174]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32174]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.92

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32174]		NaCl		growth	1.7-7.0	%
[Ref.: #32174]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32174]	acetate ChEBI	+	carbon source
[Ref.: #32174]	inosine ChEBI	+	carbon source
[Ref.: #32174]	lactate ChEBI	+	carbon source
[Ref.: #32174]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32174]	thymidine ChEBI	+	carbon source
[Ref.: #32174]	tween 80 ChEBI	+	carbon source
[Ref.: #32174]	uridine ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #32174]		hydrogen sulfide ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7713]	Sample type/isolated from	slime of a puffer fish Arothron hispidus
[Ref.: #7713]	Host species	Arothron hispidus
[Ref.: #7713]	Geographic location (country and/or sea, region)	Hawai’i, Island of O’ahu, Kaneohe Bay
[Ref.: #7713]	Country	USA
[Ref.: #7713]	Country ISO 3 Code	USA
[Ref.: #7713]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ778094 (>99% sequence identity) for Ferrimonas senticii subclade from Microbeatlas

Aquatic Samples	176
Soil Samples	1
Animal Samples	3
Plant Samples
Total Samples	180

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7713]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7713]	Ferrimonas senticii strain P2S11 16S ribosomal RNA gene, partial sequence	DQ778094	1405	ENA	394566 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ferrimonas senticii DSM 18821	GCA_000422665	scaffold	GenBank	1121880 tax ID	*
[Ref.: #66792]	Ferrimonas senticii DSM 18821	1121880.3	wgs	PATRIC	1121880 tax ID	*
[Ref.: #66792]	Ferrimonas senticii DSM 18821	2523533614	draft	JGI IMG/M	1121880 tax ID	*

[Ref.: #7713]

GC-content

54.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ferrimonas senticii DSM 18821 DSM 18821 NCBI: GCA_000422665.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ferrimonas senticii DSM 18821 DSM 18821 NCBI: GCA_000422665.1
[Ref.: #69480]	motile	yes	92.361	no
[Ref.: #69480]	flagellated	yes	67.147	yes
[Ref.: #69480]	gram-positive	no	98.999	yes
[Ref.: #69480]	anaerobic	no	94.681	no
[Ref.: #69480]	aerobic	yes	71.69	no
[Ref.: #69480]	halophile	yes	58.067	no
[Ref.: #69480]	spore-forming	no	95.625	no
[Ref.: #69480]	thermophile	no	98.709	yes
[Ref.: #69480]	glucose-util	yes	86.421	no
[Ref.: #69480]	glucose-ferment	yes	53.35	no

Availability in culture collections External links

[Ref.: #7713]

Culture collection no.

DSM 18821, ATCC BAA-1480

[Ref.: #74946]

SI-ID 396754

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ferrimonas lipolytica sp. nov., a facultatively anaerobic bacterium isolated from seawater.	Bae SS, Jung YH, Kwon YM, Chung D, Baek K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004665	2021	*
Phylogeny	Ferrimonas senticii sp. nov., a novel gammaproteobacterium isolated from the mucus of a puffer fish caught in Kaneohe Bay, Hawai'i.	Campbell S, Harada RM, Li QX	Int J Syst Evol Microbiol	10.1099/ijs.0.65074-0	2007	*

References

#7713

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18821

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32174

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28416 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74946

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396754.1 )

#28416

IJSEM 2670 2007 ( DOI 10.1099/ijs.0.65074-0 , PubMed 17978238 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Ferrimonas senticii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Ferrimonas senticii DSM 18821 DSM 18821

Ferrimonas senticii DSM 18821 DSM 18821

Change proposal

Change proposal