Name: Ferrimonas kyonanensis Asr22-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5457

Type strain:

Species: Ferrimonas kyonanensis

Strain Designation: Asr22-7

Culture col. no.: DSM 18153, NBRC 101286

Strain history: <- Y. Nakagawa, NBRC <- T. Lino; Asr22-7

NCBI tax ID(s): 1121879 (strain), 364763 (species)

SI-ID 297155

DSM 18153, NBRC 101286

Section

Ferrimonas kyonanensis Asr22-7 is a mesophilic, motile bacterium that was isolated from alimentary tract of littleneck clams.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Ferrimonadaceae*
	Genus	*Ferrimonas*
	Species	**Ferrimonas kyonanensis**
	Full Scientific Name (LPSN)	Ferrimonas kyonanensis Nakagawa et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #69480]	Motility	yes Confidence in %98.352

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7337]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7337]

Culture medium growth

[Ref.: #7337]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7337]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7337]			growth	28 °C

[Ref.: #7337]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7337]	Sample type/isolated from	alimentary tract of littleneck clams
[Ref.: #7337]	Geographic location (country and/or sea, region)	Awa District, Kyonan beach on the coast of Tokyo Bay
[Ref.: #7337]	Country	Japan
[Ref.: #7337]	Country ISO 3 Code	JPN
[Ref.: #7337]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681438 (>99% sequence identity) for Ferrimonas from Microbeatlas

Aquatic Samples	246
Soil Samples	9
Animal Samples	23
Plant Samples	6
Total Samples	284

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7337]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7337]	Ferrimonas kyonanensis gene for 16S rRNA, partial sequence	AB245514	1479	ENA	364763 tax ID
[Ref.: #20218]	Ferrimonas kyonanensis gene for 16S rRNA, partial sequence, strain: NBRC 101286	AB681438	1482	ENA	364763 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ferrimonas kyonanensis DSM 18153	GCA_000425405	scaffold	GenBank	1121879 tax ID	*
[Ref.: #66792]	Ferrimonas kyonanensis DSM 18153	1121879.3	wgs	PATRIC	1121879 tax ID	*
[Ref.: #66792]	Ferrimonas kyonanensis DSM 18153	2524023060	draft	JGI IMG/M	1121879 tax ID	*

[Ref.: #7337]

GC-content

57.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ferrimonas kyonanensis DSM 18153 DSM 18153 NCBI: GCA_000425405.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ferrimonas kyonanensis DSM 18153 DSM 18153 NCBI: GCA_000425405.1
[Ref.: #69480]	motile	yes	93.463	no
[Ref.: #69480]	flagellated	yes	88.114	no
[Ref.: #69480]	gram-positive	no	99.031	no
[Ref.: #69480]	anaerobic	no	93.217	no
[Ref.: #69480]	aerobic	no	53.154	no
[Ref.: #69480]	halophile	yes	55.049	no
[Ref.: #69480]	spore-forming	no	94.618	no
[Ref.: #69480]	thermophile	no	99.337	no
[Ref.: #69480]	glucose-util	yes	82.644	no
[Ref.: #69480]	glucose-ferment	no	52.656	no

Availability in culture collections External links

[Ref.: #7337]

Culture collection no.

DSM 18153, NBRC 101286

[Ref.: #74945]

SI-ID 297155

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ferrimonas sediminicola sp. nov. and Ferrimonas aestuarii sp. nov., Fe(III)-reducing bacteria isolated from marine environments.	Hwang J, Song J, Lim Y, Joung Y, Cho JC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004359	2020	*
Phylogeny	Psychrobium conchae gen. nov., sp. nov., a psychrophilic marine bacterium isolated from the Iheya North hydrothermal field.	Nogi Y, Abe M, Kawagucci S, Hirayama H	Int J Syst Evol Microbiol	10.1099/ijs.0.066738-0	2014	*
Phylogeny	Ferrimonas sediminum sp. nov., isolated from coastal sediment of an amphioxus breeding zone.	Ji S, Zhao R, Li Z, Li B, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.042408-0	2012	*
Metabolism	Ferrimonas futtsuensis sp. nov. and Ferrimonas kyonanensis sp. nov., selenate-reducing bacteria belonging to the Gammaproteobacteria isolated from Tokyo Bay.	Nakagawa T, Iino T, Suzuki KI, Harayama S	Int J Syst Evol Microbiol	10.1099/ijs.0.64399-0	2006	*

References

#7337

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18153

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74945

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297155.1 )

* These data were automatically processed and therefore are not curated

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Ferrimonas kyonanensis DSM 18153 DSM 18153

Ferrimonas kyonanensis DSM 18153 DSM 18153

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