Name: Clostridium moniliforme 2055
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5434

Type strain:

Species: Clostridium moniliforme

Strain Designation: 2055

Culture col. no.: DSM 3984, ATCC 25546, CCUG 28088, JCM 9990, VPI 0142B

Strain history: STAFF 1029 <-- ATCC 25546 <-- L. V. Holdeman VPI 0142B <-- A. Prévot 2055.

NCBI tax ID(s): 39489 (species)

SI-ID 38589

ATCC 25546, CCUG 28088, DSM 3984, JCM 9990

Special Collections

Other strains from Clostridium moniliforme

Section

Clostridium moniliforme 2055 is an anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from infected wound.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium moniliforme**
	Full Scientific Name (LPSN)	Clostridium moniliforme (Repaci 1910) Lawson and Rainey 2016

	Synonym	"Bacillus* moniliforme"*
	Synonym	Eubacterium moniliforme

Information on morphological and physiological properties Morphology

[Ref.: #43779]	Gram stain	positive

[Ref.: #43779]	Cell length	1.7-9.4 µm

[Ref.: #43779]	Cell width	0.6-0.9 µm

[Ref.: #43779]	Cell shape	rod-shaped

[Ref.: #43779]	Motility	yes

[Ref.: #43779]	Flagellum arrangement	peritrichous

[Ref.: #43779]	Colony size	2-8 mm
[Ref.: #43779]	Colony color	Opaque
[Ref.: #43779]	Colony shape	circular
[Ref.: #43779]	Incubation period	2 days
[Ref.: #43779]	Cultivation medium used	Horse blood agar

[Ref.: #49091]	Incubation period	2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1542]

Culture medium

AMB MEDIUM (DSMZ Medium 455)

[Ref.: #1542]

Culture medium growth

[Ref.: #1542]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1542]

Culture medium composition

expand / minimize

[Ref.: #43779]

Culture medium

Horse blood agar

[Ref.: #43779]

Culture medium growth

		Temperature
[Ref.: #1542]	growth	37 °C
[Ref.: #49091]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1542]	Oxygen tolerance	anaerobe
[Ref.: #49091]	Oxygen tolerance	anaerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43779]	dextrin ChEBI	-	builds acid from
[Ref.: #43779]	galactitol ChEBI	-	builds acid from
[Ref.: #43779]	galactose ChEBI	+	fermentation
[Ref.: #43779]	glycerol 3-phosphate ChEBI	-	builds acid from
[Ref.: #43779]	hippurate ChEBI	-	hydrolysis
[Ref.: #43779]	inulin ChEBI	-	builds acid from
[Ref.: #43779]	lactate ChEBI	-	assimilation
[Ref.: #43779]	ribitol ChEBI	-	builds acid from
[Ref.: #43779]	sorbose ChEBI	-	builds acid from

	Metabolite production	Metabolite	Production
[Ref.: #43779]		dihydrogen ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1542]	Sample type/isolated from	infected wound

[Ref.: #43779]	Sample type/isolated from	Blood, various kinds of human clinical infections, intestinal tract, soil

[Ref.: #49091]	Sample type/isolated from	Human infected wound

[Ref.: #67770]	Sample type/isolated from	Infected wound
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Other	#Wound
#Host	#Human	-
#Host Body Product	#Fluids	#Blood
#Host Body-Site	#Gastrointestinal tract	-
#Infection	#Disease	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_104892 (>99% sequence identity) for Clostridium moniliforme from Microbeatlas

Aquatic Samples	9
Soil Samples	3
Animal Samples	486
Plant Samples	4
Total Samples	502

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1542]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1542]	Eubacterium moniliforme 16S ribosomal RNA	L34622	1463	GenBank ENA	39489 tax ID
[Ref.: #1542]	Clostridium moniliforme strain 2055 16S ribosomal RNA, partial sequence	NR_104892	1488	GenBank ENA	39489 tax ID
[Ref.: #20218]	Eubacterium moniliforme partial 16S rRNA gene, strain 2055	HF558373	1488	GenBank ENA	39489 tax ID	*
[Ref.: #20218]	Eubacterium moniliforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 9990	AB540985	1476	GenBank ENA	39489 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium moniliforme DSM 3984	GCA_017873235	contig	GenBank ENA	39489 tax ID	*
[Ref.: #66792]	Clostridium moniliforme strain DSM 3984	39489.3	wgs	PATRIC	39489 tax ID	*
[Ref.: #66792]	Eubacterium moniliforme DSM 3984	2913335541	draft	JGI IMG/M	39489 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium moniliforme strain DSM 3984 PATRIC: 39489.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium moniliforme strain DSM 3984 PATRIC: 39489.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	73.261	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	88.913	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	75.803	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	99.343	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.148	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	63.42	yes

Availability in culture collections External links

[Ref.: #1542]

Culture collection no.

DSM 3984, ATCC 25546, CCUG 28088, JCM 9990, VPI 0142B

[Ref.: #74922]

SI-ID 38589

References

#1542

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3984

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43779

Paul A. Lawson, Fred A. Rainey: Proposal to restrict the genus Clostridium Prazmowski to Clostridium butyricum and related species. IJSEM 66: 1009 - 1016 2016 ( DOI 10.1099/ijsem.0.000824 , PubMed 26643615 )

#49091 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28088

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74922

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38589.1 )

* These data were automatically processed and therefore are not curated

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Clostridium moniliforme strain DSM 3984

Clostridium moniliforme strain DSM 3984

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