Acetobacterium tundrae (DSM 9173, Z-4493)

Name: Acetobacterium tundrae (DSM 9173, Z-4493)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5411

Type strain

Strain Designation Z-4493

Culture col. no. DSM 9173 Z-4493

NCBI tax ID(s) 132932

Special Collections DSMZ

History DSMZ <- A. N. Nozhevnikova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Z-4493 <- O. R. Kotsyurbenko and M. V. Simankova; {1994}

Links

Acetobacterium tundrae Z-4493 is an anaerobe bacterium that was isolated from tundra wetland soil.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 48589

DSM 9173

@ref 20215

Last LPSN update 2026-05-29 08:26:10

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Eubacteriaceae

Genus Acetobacterium

Species Acetobacterium tundrae

Full scientific name Acetobacterium tundrae Simankova et al. 2001

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3504	ACETOBACTERIUM TUNDRAE MEDIUM (DSMZ Medium 900)		Medium recipe at MediaDive	Name: ACETOBACTERIUM TUNDRAE MEDIUM (DSMZ Medium 900) Composition: D-Fructose 4.99002 g/l Na2CO3 1.49701 g/l Yeast extract 0.998004 g/l MgCl2 x 6 H2O 0.518962 g/l KCl 0.329341 g/l NH4Cl 0.329341 g/l KH2PO4 0.329341 g/l CaCl2 x 2 H2O 0.299401 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l Pyridoxine hydrochloride 0.000299401 g/l Nicotinic acid 0.000199601 g/l Thiamine-HCl x 2 H2O 0.000199601 g/l CoCl2 x 6 H2O 0.000189621 g/l Calcium pantothenate 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Vitamin B12 9.98004e-05 g/l p-Aminobenzoic acid 7.98403e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l D-(+)-biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3504	positive	growth	20

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3504	anaerobe
125439	facultative anaerobe	94.019

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Tundra
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3504	tundra wetland soil	Polar Ural	Russia	RUS	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ297449 (>99% sequence identity) for Acetobacterium paludosum from Microbeatlas

Aquatic Samples	49
Soil Samples	7
Animal Samples	7
Plant Samples	0
Total Samples	63

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3504	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM808661v1 assembly for Acetobacterium tundrae DSM 9173	contig	GCA_008086615	132932.4	2995191824	132932	64.46
124043	ASM1428439v1 assembly for Acetobacterium tundrae DSM 9173	contig	GCA_014284395	132932.5	8065740953	132932	63.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3504	Acetobacterium aff. tundrae DSM 9173 partial 16S rRNA gene	AJ297449	1478		132932

GC content

@ref	GC-content (mol%)	Method
3504	39.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM808661v1 assembly for Acetobacterium tundrae DSM 9173
BV-BRC: 132932.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.02	no
125439	gram_stain	BacteriaNetⓘ	variable	64.33	no
125439	motility	BacteriaNetⓘ	yes	61.99	no
125439	spore_formation	BacteriaNetⓘ	yes	59.48	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Insights into the genome structure of four acetogenic bacteria with specific reference to the Wood-Ljungdahl pathway.	Esposito A, Tamburini S, Triboli L, Ambrosino L, Chiusano ML, Jousson O.	Microbiologyopen	10.1002/mbo3.938	2019
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018
Phylogeny	Acetobacterium tundrae sp nov, a new psychrophilic acetogenic bacterium from tundra soil.	Simankova MV, Kotsyurbenko OR, Stackebrandt E, Kostrikina NA, Lysenko AM, Osipov GA, Nozhevnikova AN	Arch Microbiol	10.1007/s002030000229	2000

References

#3504	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9173
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetobacterium tundrae (DSM 9173, Z-4493)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_008086615

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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