Strain identifier

BacDive ID: 5411

Type strain: Yes

Species: Acetobacterium tundrae

Strain Designation: Z-4493

Strain history: <- A. N. Nozhevnikova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Z-4493 <- O. R. Kotsyurbenko and M. V. Simankova; {1994}

NCBI tax ID(s): 132932 (species)

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General

@ref: 3504

BacDive-ID: 5411

DSM-Number: 9173

keywords: 16S sequence, Bacteria, anaerobe, psychrophilic

description: Acetobacterium tundrae Z-4493 is an anaerobe, psychrophilic bacterium that was isolated from tundra wetland soil.

NCBI tax id

  • NCBI tax id: 132932
  • Matching level: species

strain history

  • @ref: 3504
  • history: <- A. N. Nozhevnikova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Z-4493 <- O. R. Kotsyurbenko and M. V. Simankova; {1994}

doi: 10.13145/bacdive5411.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium tundrae
  • full scientific name: Acetobacterium tundrae Simankova et al. 2001

@ref: 3504

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium tundrae

full scientific name: Acetobacterium tundrae Simankova et al. 2001

strain designation: Z-4493

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 3504
  • name: ACETOBACTERIUM TUNDRAE MEDIUM (DSMZ Medium 900)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/900
  • composition: Name: ACETOBACTERIUM TUNDRAE MEDIUM (DSMZ Medium 900) Composition: D-Fructose 4.99002 g/l Na2CO3 1.49701 g/l Yeast extract 0.998004 g/l MgCl2 x 6 H2O 0.518962 g/l KCl 0.329341 g/l NH4Cl 0.329341 g/l KH2PO4 0.329341 g/l CaCl2 x 2 H2O 0.299401 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l Pyridoxine hydrochloride 0.000299401 g/l Nicotinic acid 0.000199601 g/l Thiamine-HCl x 2 H2O 0.000199601 g/l CoCl2 x 6 H2O 0.000189621 g/l Calcium pantothenate 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Vitamin B12 9.98004e-05 g/l p-Aminobenzoic acid 7.98403e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l D-(+)-biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water

culture temp

  • @ref: 3504
  • growth: positive
  • type: growth
  • temperature: 20

Physiology and metabolism

oxygen tolerance

  • @ref: 3504
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 3504
  • sample type: tundra wetland soil
  • geographic location: Polar Ural
  • country: Russia
  • origin.country: RUS
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Tundra
#Environmental#Terrestrial#Wetland (Swamp)

taxonmaps

  • @ref: 69479
  • File name: preview.99_45343.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_32876;99_45343&stattab=map
  • Last taxonomy: Acetobacterium paludosum
  • 16S sequence: AJ297449
  • Sequence Identity:
  • Total samples: 63
  • soil counts: 7
  • aquatic counts: 49
  • animal counts: 7

Safety information

risk assessment

  • @ref: 3504
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3504
  • description: Acetobacterium aff. tundrae DSM 9173 partial 16S rRNA gene
  • accession: AJ297449
  • length: 1478
  • database: nuccore
  • NCBI tax ID: 132932

GC content

  • @ref: 3504
  • GC-content: 39.2
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 3504

culture collection no.: DSM 9173

straininfo link

  • @ref: 74900
  • straininfo: 48589

literature

  • topic: Phylogeny
  • Pubmed-ID: 11195100
  • title: Acetobacterium tundrae sp nov, a new psychrophilic acetogenic bacterium from tundra soil.
  • authors: Simankova MV, Kotsyurbenko OR, Stackebrandt E, Kostrikina NA, Lysenko AM, Osipov GA, Nozhevnikova AN
  • journal: Arch Microbiol
  • DOI: 10.1007/s002030000229
  • year: 2000
  • mesh: Acetates/metabolism, Anaerobiosis, Bacteria, Anaerobic/classification/cytology/isolation & purification/physiology, Base Composition, Cold Climate, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Ecosystem, Gram-Positive Asporogenous Rods/*classification/cytology/*isolation & purification/physiology, Hydrogen-Ion Concentration, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, *Soil Microbiology, Temperature
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
3504Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9173)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9173
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74900Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48589.1StrainInfo: A central database for resolving microbial strain identifiers