Name: Qipengyuania vulgaris O22-2-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5386

Type strain:

Species: Qipengyuania vulgaris

Strain Designation: O22-2-10, 022-2-10

Culture col. no.: DSM 17792, CIP 108956, KMM 3465

Strain history: CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Victoria, Australia: strain 022-2-10

NCBI tax ID(s): 291985 (species)

SI-ID 290971

CIP 108956, DSM 17792

Section

Qipengyuania vulgaris O22-2-10 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Starfish Stellaster equestris.

Gram-negative
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Qipengyuania*
	Species	**Qipengyuania vulgaris**
	Full Scientific Name (LPSN)	Qipengyuania vulgaris (Ivanova et al. 2006) Xu et al. 2020

Synonym

Erythrobacter vulgaris

Information on morphological and physiological properties Morphology

[Ref.: #123891]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #123891]	Cell shape	rod-shaped

[Ref.: #123891]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7187]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7187]

Culture medium growth

[Ref.: #7187]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7187]

Culture medium composition

expand / minimize

[Ref.: #42286]

Culture medium

Marine agar (MA)

[Ref.: #42286]

Culture medium growth

[Ref.: #42286]

Culture medium composition

expand / minimize

[Ref.: #123891]

Culture medium

CIP Medium 13

[Ref.: #123891]

Culture medium growth

[Ref.: #123891]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7187]			growth	28 °C
[Ref.: #42286]			growth	30 °C

[Ref.: #7187]	Temperature range	mesophilic
[Ref.: #42286]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123891]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123891]		nitrate ChEBI	-	reduction
[Ref.: #123891]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123891]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123891]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123891]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123891]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #123891]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123891]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123891]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123891]	11573	-	+	+	+	-	+	+	-	+	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7187]	Sample type/isolated from	Starfish Stellaster equestris
[Ref.: #7187]	Host species	Stellaster equestris
[Ref.: #7187]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #7187]	Continent	Asia

[Ref.: #123891]	Sample type/isolated from	Starfish, Stellaster equestris
[Ref.: #123891]	Country	China
[Ref.: #123891]	Country ISO 3 Code	CHN
[Ref.: #123891]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY706935 (>99% sequence identity) for Qipengyuania from Microbeatlas

Aquatic Samples	170
Soil Samples	9
Animal Samples	4
Plant Samples	1
Total Samples	184

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7187]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123891]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7187]	Erythrobacter vulgaris strain 022 2-10 16S ribosomal RNA gene, partial sequence	AY706935	1417	ENA	291985 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Qipengyuania vulgaris DSM 17792	GCA_009827325	contig	GenBank	291985 tax ID	*
[Ref.: #66792]	Erythrobacter vulgaris strain DSM 17792	291985.10	wgs	PATRIC	291985 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Erythrobacter vulgaris strain DSM 17792 PATRIC: 291985.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Erythrobacter vulgaris strain DSM 17792 PATRIC: 291985.10
[Ref.: #69480]	gram-positive	no	97.448	no
[Ref.: #69480]	anaerobic	no	99.483	no
[Ref.: #69480]	halophile	no	85.519	no
[Ref.: #69480]	spore-forming	no	96.589	no
[Ref.: #69480]	glucose-util	yes	86.733	no
[Ref.: #69480]	motile	no	87.629	no
[Ref.: #69480]	flagellated	no	97.913	no
[Ref.: #69480]	aerobic	yes	95.604	no
[Ref.: #69480]	thermophile	no	98.036	no
[Ref.: #69480]	glucose-ferment	no	91.964	no

Availability in culture collections External links

[Ref.: #7187]

Culture collection no.

DSM 17792, CIP 108956, KMM 3465

[Ref.: #74877]

SI-ID 290971

References

#7187

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17792

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42286 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74877

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290971.1 )

#123891 Collection of Institut Pasteur ; Curators of the CIP; CIP 108956
* These data were automatically processed and therefore are not curated

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Erythrobacter vulgaris strain DSM 17792

Erythrobacter vulgaris strain DSM 17792

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