Name: Sharpea azabuensis RL 1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5379

Type strain:

Species: Sharpea azabuensis

Strain Designation: RL 1

Culture col. no.: DSM 20406, ATCC 27784, JCM 8229

Strain history: <- M.E. Sharpe, RL 1

NCBI tax ID(s): 322505 (species)

SI-ID 39174

ATCC 27784, DSM 20406, JCM 8229, NCIMB 702185, NCDO2185

Other strains from Sharpea azabuensis

S. azabuensis ST18, DSM 18934, JCM 14210, KCTC ... (type strain)
S. azabuensis JCM 16040
S. azabuensis JCM 16041
S. azabuensis JCM 16042

Section

Sharpea azabuensis RL 1 is an anaerobe, mesophilic bacterium that was isolated from calf rumen.

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Erysipelotrichia*
	Order	*Erysipelotrichales*
	Family	*Coprobacillaceae*
	Genus	*Sharpea*
	Species	**Sharpea azabuensis**
	Full Scientific Name (LPSN)	Sharpea azabuensis Morita et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %92.914

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8792]

Culture medium

MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232)

[Ref.: #8792]

Culture medium growth

[Ref.: #8792]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8792]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8792]			growth	37 °C

[Ref.: #8792]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8792]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.163

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #8792]	Murein short key	A31
[Ref.: #8792]	Murein types	A1gamma m-Dpm-direct

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8792]	Sample type/isolated from	calf rumen
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8792]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sharpea azabuensis DSM 20406	GCA_900108995	contig	GenBank	322505 tax ID	*
[Ref.: #66792]	Sharpea azabuensis strain DSM 20406	322505.6	wgs	PATRIC	322505 tax ID	*
[Ref.: #66792]	Sharpea azabuensis DSM 20406	2606217806	draft	JGI IMG/M	322505 tax ID	*

[Ref.: #8792]

GC-content

34.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sharpea azabuensis strain DSM 20406 PATRIC: 322505.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sharpea azabuensis strain DSM 20406 PATRIC: 322505.6
[Ref.: #69480]	gram-positive	yes	94.991	no
[Ref.: #69480]	anaerobic	yes	99.287	yes
[Ref.: #69480]	halophile	no	73.168	no
[Ref.: #69480]	spore-forming	no	80.43	no
[Ref.: #69480]	glucose-util	yes	86.602	no
[Ref.: #69480]	motile	no	89.672	no
[Ref.: #69480]	flagellated	no	93.183	no
[Ref.: #69480]	aerobic	no	99.446	yes
[Ref.: #69480]	thermophile	no	97.412	no
[Ref.: #69480]	glucose-ferment	yes	79.776	no

Availability in culture collections External links

[Ref.: #8792]

Culture collection no.

DSM 20406, ATCC 27784, JCM 8229

[Ref.: #74869]

SI-ID 39174

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sharpea azabuensis: a ruminal bacterium that produces trans-11 intermediates from linoleic and linolenic acid.	Dewanckele L, Vlaeminck B, Fievez V	Microbiology (Reading)	10.1099/mic.0.000811	2019	*

References

#8792

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20406

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74869

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39174.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sharpea azabuensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Sharpea azabuensis strain DSM 20406

Sharpea azabuensis strain DSM 20406

Change proposal

Change proposal