Enterococcus saccharolyticus subsp. saccharolyticus HF 62 is a microaerophile, mesophilic, Gram-positive animal pathogen that was isolated from straw bedding.
Gram-positive coccus-shaped microaerophile mesophilic animal pathogen genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Enterococcaceae |
| Genus Enterococcus |
| Species Enterococcus saccharolyticus subsp. saccharolyticus |
| Full scientific name Enterococcus saccharolyticus subsp. saccharolyticus (Farrow et al. 1985) Chen et al. 2013 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9036 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 9036 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 40583 | MEDIUM 29- Brain heart agar | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |||
| 122335 | CIP Medium 29 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 122335 | NaCl | positive | growth | 6.5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 9036 | A11.31 | A4alpha L-Lys-D-Asp |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | + | builds acid from | from API rID32STR |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68381 | 16899 ChEBI | D-mannitol | + | builds acid from | from API rID32STR |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 122335 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68381 | 606565 ChEBI | hippurate | - | hydrolysis | from API rID32STR |
| 122335 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68381 | 17716 ChEBI | lactose | + | builds acid from | from API rID32STR |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68381 | 6731 ChEBI | melezitose | + | builds acid from | from API rID32STR |
| 68381 | 28053 ChEBI | melibiose | + | builds acid from | from API rID32STR |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | builds acid from | from API rID32STR |
| 122335 | 17632 ChEBI | nitrate | + | reduction | |
| 122335 | 16301 ChEBI | nitrite | - | reduction | |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | + | builds acid from | from API rID32STR |
| 68381 | 30911 ChEBI | sorbitol | + | builds acid from | from API rID32STR |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | from API rID32STR | |
| 122335 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68381 | alkaline phosphatase | - | 3.1.3.1 | from API rID32STR |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68381 | alpha-galactosidase | + | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 122335 | amylase | - | ||
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 122335 | beta-galactosidase | + | 3.2.1.23 | |
| 68381 | beta-glucosidase | + | 3.2.1.21 | from API rID32STR |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 9036 | catalase | - | 1.11.1.6 | |
| 122335 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 9036 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 122335 | gelatinase | - | ||
| 68381 | glycyl tryptophan arylamidase | + | from API rID32STR | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 122335 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 122335 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122335 | oxidase | - | ||
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32STR |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | degradation of sugar alcohols | 87.5 | 14 of 16 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | pyrimidine metabolism | 84.44 | 38 of 45 | ||
| 66794 | purine metabolism | 81.91 | 77 of 94 | ||
| 66794 | glycine betaine biosynthesis | 80 | 4 of 5 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | starch degradation | 80 | 8 of 10 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | Entner Doudoroff pathway | 70 | 7 of 10 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | non-pathway related | 65.79 | 25 of 38 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | glutamate and glutamine metabolism | 64.29 | 18 of 28 | ||
| 66794 | oxidative phosphorylation | 63.74 | 58 of 91 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | isoleucine metabolism | 62.5 | 5 of 8 | ||
| 66794 | alanine metabolism | 62.07 | 18 of 29 | ||
| 66794 | NAD metabolism | 61.11 | 11 of 18 | ||
| 66794 | methylglyoxal degradation | 60 | 3 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | arginine metabolism | 58.33 | 14 of 24 | ||
| 66794 | methionine metabolism | 57.69 | 15 of 26 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | polyamine pathway | 56.52 | 13 of 23 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | allantoin degradation | 55.56 | 5 of 9 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | metabolism of disaccharids | 54.55 | 6 of 11 | ||
| 66794 | leucine metabolism | 53.85 | 7 of 13 | ||
| 66794 | isoprenoid biosynthesis | 53.85 | 14 of 26 | ||
| 66794 | lysine metabolism | 52.38 | 22 of 42 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | adipate degradation | 50 | 1 of 2 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 50 | 4 of 8 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | suberin monomers biosynthesis | 50 | 1 of 2 | ||
| 66794 | tetrahydrofolate metabolism | 50 | 7 of 14 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | tryptophan metabolism | 47.37 | 18 of 38 | ||
| 66794 | phenylpropanoid biosynthesis | 46.15 | 6 of 13 | ||
| 66794 | urea cycle | 46.15 | 6 of 13 | ||
| 66794 | lipid metabolism | 45.16 | 14 of 31 | ||
| 66794 | CO2 fixation in Crenarchaeota | 44.44 | 4 of 9 | ||
| 66794 | reductive acetyl coenzyme A pathway | 42.86 | 3 of 7 | ||
| 66794 | citric acid cycle | 42.86 | 6 of 14 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | glutathione metabolism | 42.86 | 6 of 14 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | myo-inositol biosynthesis | 40 | 4 of 10 | ||
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | ||
| 66794 | degradation of pentoses | 39.29 | 11 of 28 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 36.36 | 4 of 11 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | flavin biosynthesis | 33.33 | 5 of 15 | ||
| 66794 | ascorbate metabolism | 31.82 | 7 of 22 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | propionate fermentation | 30 | 3 of 10 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 29.41 | 5 of 17 | ||
| 66794 | degradation of sugar acids | 28 | 7 of 25 | ||
| 66794 | arachidonic acid metabolism | 27.78 | 5 of 18 | ||
| 66794 | cholesterol biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | androgen and estrogen metabolism | 25 | 4 of 16 | ||
| 66794 | dTDPLrhamnose biosynthesis | 25 | 2 of 8 | ||
| 66794 | sulfate reduction | 23.08 | 3 of 13 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | ||
| 66794 | heme metabolism | 21.43 | 3 of 14 |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9036 | - | + | - | - | + | - | - | + | + | + | + | + | + | - | + | + | + | - | - | - | - | + | - | - | - | + | + | + | + | - | - | - | |
| 9036 | - | + | - | - | + | - | - | + | + | + | + | + | + | - | - | + | + | - | - | - | +/- | + | - | - | - | + | + | + | + | - | - | - |
Global distribution of 16S sequence U30931 (>99% sequence identity) for Enterococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM2902382v1 assembly for Enterococcus saccharolyticus subsp. saccharolyticus DSM 20726 | complete | 1814218 | 94.32 | ||||
| 67770 | Ente_sacc_ATCC43076_V2 assembly for Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 | scaffold | 1139996 | 75.85 | ||||
| 67770 | Ente_sacc_ATCC43076_V1 assembly for Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 | scaffold | 1139996 | 74.05 | ||||
| 67770 | ASM188623v1 assembly for Enterococcus saccharolyticus DSM 20726 | scaffold | 41997 | 64.97 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Enterococcus saccharolyticus 16S ribosomal RNA gene, partial sequence | AF061004 | 1506 | 1139996 | ||
| 20218 | E.saccharolyticus 16S rRNA gene, partial (strain ATTC 43076 (CCUG 33311)) | Y12919 | 366 | 1139996 | ||
| 20218 | Enterococcus saccharolyticus strain KCTC 3643 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | HM241937 | 440 | 1139996 | ||
| 20218 | Enterococcus saccharolyticus 16S rRNA gene, strain LMG 11427 | AJ301839 | 1902 | 1139996 | ||
| 20218 | Enterococcus saccharolyticus gene for 16S rRNA, partial sequence, strain: NBRC 100493 | AB681191 | 1483 | 1139996 | ||
| 20218 | Enterococcus saccharolyticus 16S ribosomal RNA partial sequence | U30931 | 1521 | 41997 | ||
| 20218 | S.saccharolyticus 16S rRNA gene (5') | X55766 | 144 | 1139996 | ||
| 20218 | S.saccharolyticus 16S rRNA gene | X55767 | 1293 | 1139996 | ||
| 20218 | Enterococcus saccharolyticus 16S rRNA gene | Y18357 | 1456 | 1139996 | ||
| 9036 | Enterococcus saccharolyticus strain ATCC 43076 16S ribosomal RNA gene, partial sequence | DQ411816 | 1480 | 1139996 | ||
| 67770 | Enterococcus saccharolyticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 8734 | LC097072 | 1467 | 41997 | ||
| 124043 | Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 16S ribosomal RNA gene, partial sequence. | MK330546 | 1289 | 1139996 | ||
| 124043 | Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence. | MK330588 | 4263 | 1139996 |
| 9036 | GC-content (mol%)37.6 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 96.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 78.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 50.60 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 67.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 87.39 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 90.31 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 74.59 | no |
| 125438 | aerobic | aerobicⓘ | no | 87.93 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 93.77 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 80.67 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Phenotypic and genetic heterogeneity of Acinetobacter baumannii in the course of an animal chronic infection. | Bednarczuk L, Chassard A, Plantade J, Charpentier X, Laaberki MH. | Microb Genom | 10.1099/mgen.0.001352 | 2025 | |
| Genetics | Enterococcus burkinafasonensis sp. nov. isolated from human gut microbiota. | Gouba N, Yimagou EK, Hassani Y, Drancourt M, Fellag M, Mbogning Fonkou MD. | New Microbes New Infect | 10.1016/j.nmni.2020.100702 | 2020 | |
| Genetics | Evaluation of Probiotic Properties and Safety of Lactobacillus helveticus LH10 Derived from Vinegar through Comprehensive Analysis of Genotype and Phenotype. | Du Y, Xu J, Li J, Wu R. | Microorganisms | 10.3390/microorganisms12040831 | 2024 | |
| Metabolism | Molecular and eco-physiological characterization of arsenic (As)-transforming Achromobacter sp. KAs 3-5T from As-contaminated groundwater of West Bengal, India. | Mohapatra B, Satyanarayana T, Sar P. | J Environ Sci Health A Tox Hazard Subst Environ Eng | 10.1080/10934529.2018.1462897 | 2018 | |
| Imidazoles and Quaternary Ammonium Compounds as Effective Therapies against (Multidrug-Resistant) Bacterial Wound Infections. | Van de Vliet L, Vackier T, Thevissen K, Decoster D, Steenackers HP. | Antibiotics (Basel) | 10.3390/antibiotics13100949 | 2024 | ||
| Genetics | Investigating human-derived lactic acid bacteria for alcohol resistance. | Kang S, Long J, Park MS, Ji GE, Ju Y, Ku S. | Microb Cell Fact | 10.1186/s12934-024-02375-4 | 2024 | |
| Exploring the Antibacterial Potency of Cymbopogon Essential Oils: Liposome Encapsulation and Phytochemical Insights. | Elmi A, Abdoul-Latif FM, Pasc A, Risler A, Philippot S, Gil-Ortiz R, Laurain-Mattar D, Spina R. | Antibiotics (Basel) | 10.3390/antibiotics14050510 | 2025 | ||
| Genetic "expiry-date" circuits control lifespan of synthetic scavenger bacteria for safe bioremediation. | Tran KM, Nong NT, Ren J, Lee K, Lee D, Gsponer J, Lee HM, Na D. | Nucleic Acids Res | 10.1093/nar/gkaf703 | 2025 | ||
| Pathogenicity | Improved in vitro assay for determining the mucin adherence of bacteria sensitive to Triton X-100 treatment. | Tsilia V, Van den Abbeele P, Van de Wiele T. | Folia Microbiol (Praha) | 10.1007/s12223-015-0376-0 | 2015 | |
| The Antibacterial Efficacy of Far-UVC Light: A Combined-Method Study Exploring the Effects of Experimental and Bacterial Variables on Dose-Response. | Griffin DT, Gourlay T, Maclean M. | Pathogens | 10.3390/pathogens13080698 | 2024 | ||
| Production of 13S-hydroxy-9(Z)-octadecenoic acid from linoleic acid by whole recombinant cells expressing linoleate 13-hydratase from Lactobacillus acidophilus. | Park JY, Lee SH, Kim KR, Park JB, Oh DK. | J Biotechnol | 10.1016/j.jbiotec.2015.05.006 | 2015 | ||
| Enhanced antimicrobial efficacy and energy efficiency of low irradiance 405-nm light for bacterial decontamination. | Sinclair LG, Anderson JG, MacGregor SJ, MacGregor SJ, Maclean M. | Arch Microbiol | 10.1007/s00203-024-03999-1 | 2024 | ||
| Evaluation of oil-in-water (O/W) emulsifying properties of galactan exopolysaccharide from Weissella confusa KR780676. | Kavitake D, Balyan S, Devi PB, Shetty PH. | J Food Sci Technol | 10.1007/s13197-020-04262-3 | 2020 | ||
| Identification of Dairy Fungal Contamination and Reduction of Aflatoxin M1 Amount by Three Acid and Bile Resistant Probiotic Bacteria. | Faghihi Shahrestani F, Tajabadi Ebrahimi M, Bayat M, Hashemi J, Razavilar V. | Arch Razi Inst | 10.22092/ari.2019.126572.1347 | 2021 | ||
| The Effect of Antibiotics on Planktonic Cells and Biofilm Formation Ability of Collected Arcobacter-like Strains and Strains Isolated within the Czech Republic. | Svarcova K, Pejchalova M, Silha D. | Antibiotics (Basel) | 10.3390/antibiotics11010087 | 2022 | ||
| Synthesis, antibacterial and antifungal activities of bifonazole derivatives. | El Hage S, Lajoie B, Feuillolay C, Roques C, Baziard G. | Arch Pharm (Weinheim) | 10.1002/ardp.201000304 | 2011 | ||
| Phylogeny | Transfer of Pseudomonas flectens Johnson 1956 to Phaseolibacter gen. nov., in the family Enterobacteriaceae, as Phaseolibacter flectens gen. nov., comb. nov. | Halpern M, Fridman S, Aizenberg-Gershtein Y, Izhaki I. | Int J Syst Evol Microbiol | 10.1099/ijs.0.033654-0 | 2013 | |
| In Vitro Evaluation of the Effect of Oral Probiotic Weissella cibaria on the Formation of Multi-Species Oral Biofilms on Dental Implant Surfaces. | Kang MS, Park GY. | Microorganisms | 10.3390/microorganisms9122482 | 2021 | ||
| Brevibacillus DesertYSK and Rhizobium MAP7 stimulate the growth and pigmentation of Lactuca sativa L. | Mowafy AM, Khalifa S, Elsayed A. | J Genet Eng Biotechnol | 10.1186/s43141-023-00465-1 | 2023 | ||
| Metabolism | Acinetobacter calcoaceticus is Well Adapted to Withstand Intestinal Stressors and Modulate the Gut Epithelium. | Glover JS, Browning BD, Ticer TD, Engevik AC, Engevik MA. | Front Physiol | 10.3389/fphys.2022.880024 | 2022 | |
| Growth and gaseous emissions of pure and mixed small intestinal bacterial cultures: Effects of bile and vancomycin. | Hakalehto E, Hell M, Bernhofer C, Heitto A, Pesola J, Humppi T, Paakkanen H. | Pathophysiology | 10.1016/j.pathophys.2009.07.003 | 2010 | ||
| Metabolism | Surface-bound proteins of Lactobacillus plantarum 423 that contribute to adhesion of Caco-2 cells and their role in competitive exclusion and displacement of Clostridium sporogenes and Enterococcus faecalis. | Ramiah K, van Reenen CA, Dicks LM. | Res Microbiol | 10.1016/j.resmic.2008.06.002 | 2008 | |
| gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances. | Domazet-Loso M, Domazet-Loso T. | PLoS One | 10.1371/journal.pone.0166602 | 2016 | ||
| Enzymology | A potent cadmium bioaccumulating Enterobacter cloacae strain displays phytobeneficial property in Cd-exposed rice seedlings. | Ghosh A, Pramanik K, Bhattacharya S, Mondal S, Ghosh SK, Maiti TK. | Curr Res Microb Sci | 10.1016/j.crmicr.2021.100101 | 2022 | |
| Scarless Removal of Large Resistance Island AbaR Results in Antibiotic Susceptibility and Increased Natural Transformability in Acinetobacter baumannii. | Godeux AS, Svedholm E, Lupo A, Haenni M, Venner S, Laaberki MH, Charpentier X. | Antimicrob Agents Chemother | 10.1128/aac.00951-20 | 2020 | ||
| Genetics | Comparative Genomics and Specific Functional Characteristics Analysis of Lactobacillus acidophilus. | Huang Z, Zhou X, Stanton C, Ross RP, Zhao J, Zhang H, Yang B, Chen W. | Microorganisms | 10.3390/microorganisms9091992 | 2021 | |
| Lactobacillus reuteri MJM60668 Prevent Progression of Non-Alcoholic Fatty Liver Disease through Anti-Adipogenesis and Anti-inflammatory Pathway. | Werlinger P, Nguyen HT, Gu M, Cho JH, Cheng J, Suh JW. | Microorganisms | 10.3390/microorganisms10112203 | 2022 | ||
| Novel Oxadiazole Thioglycosides as Potential Anti-Acinetobacter Agents. | Akbari Dilmaghani K, Nasuhi Pur F, Mahammad Pour M, Mahammad Nejad J. | Iran J Pharm Res | 2016 | |||
| Biotechnology | Second generation Pichia pastoris strain and bioprocess designs. | Ergun BG, Lacin K, Caloglu B, Binay B. | Biotechnol Biofuels Bioprod | 10.1186/s13068-022-02234-7 | 2022 | |
| Pathogenicity | Efficacy of some neutralizers in suspension tests determining the activity of disinfectants. | Espigares E, Bueno A, Fernandez-Crehuet M, Espigares M. | J Hosp Infect | 10.1016/s0195-6701(03)00238-x | 2003 | |
| Metabolism | Potential of selected lactic acid bacteria to produce food compatible antifungal metabolites. | De Muynck C, Leroy AI, De Maeseneire S, Arnaut F, Soetaert W, Vandamme EJ. | Microbiol Res | 10.1016/j.micres.2004.07.002 | 2004 | |
| Metabolism | The antioxidant and prebiotic properties of lactobionic acid. | Goderska K. | Appl Microbiol Biotechnol | 10.1007/s00253-019-09754-7 | 2019 | |
| Genomic Analysis of Limosilactobacillus fermentum ATCC 23271, a Potential Probiotic Strain with Anti-Candida Activity. | Dos Santos CI, Campos CDL, Nunes-Neto WR, do Carmo MS, Nogueira FAB, Ferreira RM, Costa EPS, Gonzaga LF, Araujo JMM, Monteiro JM, Monteiro CRAV, Platner FS, Figueiredo IFS, Holanda RA, Monteiro SG, Fernandes ES, Monteiro AS, Monteiro-Neto V. | J Fungi (Basel) | 10.3390/jof7100794 | 2021 | ||
| Mechanistic and functional aspects of the Ruminococcin C sactipeptide isoforms. | Shamseddine L, Roblin C, Veyrier I, Basset C, De Macedo L, Boyeldieu A, Maresca M, Nicoletti C, Brasseur G, Kieffer-Jaquinod S, Courvoisier-Dezord E, Amouric A, Carpentier P, Campo N, Berge M, Polard P, Perrier J, Duarte V, Lafond M. | iScience | 10.1016/j.isci.2023.107563 | 2023 | ||
| Phytochemical analysis and anti-microbial activities of Artemisia spp. and rapid isolation methods of artemisinin. | Mohammed S, Dekabo A, Hailu T. | AMB Express | 10.1186/s13568-022-01346-5 | 2022 | ||
| Isolation of Antimicrobial Compounds From Cnestis ferruginea Vahl ex. DC (Connaraceae) Leaves Through Bioassay-Guided Fractionation. | Kouakou K, Panda SK, Yang MR, Lu JG, Jiang ZH, Van Puyvelde L, Luyten W. | Front Microbiol | 10.3389/fmicb.2019.00705 | 2019 | ||
| Genetic and phenotypic assessment of the antimicrobial activity of three potential probiotic lactobacilli against human enteropathogenic bacteria. | Kiousi DE, Efstathiou C, Tzampazlis V, Plessas S, Panopoulou M, Koffa M, Galanis A. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1127256 | 2023 | ||
| Aglycone Isoflavones and Exopolysaccharides Produced by Lactobacillus acidophilus in Fermented Soybean Paste. | Kim JS, Lee JH, Surh J, Kang SA, Jang KH. | Prev Nutr Food Sci | 10.3746/pnf.2016.21.2.117 | 2016 | ||
| Genetics | New Insight into Antimicrobial Compounds from Food and Marine-Sourced Carnobacterium Species through Phenotype and Genome Analyses. | Begrem S, Ivaniuk F, Gigout-Chevalier F, Kolypczuk L, Bonnetot S, Leroi F, Grovel O, Delbarre-Ladrat C, Passerini D. | Microorganisms | 10.3390/microorganisms8071093 | 2020 | |
| Limosilactobacillus fermentum Strain 3872: Antibacterial and Immunoregulatory Properties and Synergy with Prebiotics against Socially Significant Antibiotic-Resistant Infections of Animals and Humans. | Abramov VM, Kosarev IV, Machulin AV, Priputnevich TV, Chikileva IO, Deryusheva EI, Abashina TN, Donetskova AD, Panin AN, Melnikov VG, Suzina NE, Nikonov IN, Selina MV, Khlebnikov VS, Sakulin VK, Vasilenko RN, Samoilenko VA, Uversky VN, Karlyshev AV. | Antibiotics (Basel) | 10.3390/antibiotics11101437 | 2022 | ||
| An Engineered Double Lipid II Binding Motifs-Containing Lantibiotic Displays Potent and Selective Antimicrobial Activity against Enterococcus faecium. | Zhao X, Yin Z, Breukink E, Moll GN, Kuipers OP. | Antimicrob Agents Chemother | 10.1128/aac.02050-19 | 2020 | ||
| Metabolism | Biosynthesis of Ditropolonyl Sulfide, an Antibacterial Compound Produced by Burkholderia cepacia Complex Strain R-12632. | Depoorter E, Coenye T, Vandamme P. | Appl Environ Microbiol | 10.1128/aem.01169-21 | 2021 | |
| Metabolism | Glucose triggers ATP secretion from bacteria in a growth-phase-dependent manner. | Hironaka I, Iwase T, Sugimoto S, Okuda K, Tajima A, Yanaga K, Mizunoe Y. | Appl Environ Microbiol | 10.1128/aem.03871-12 | 2013 | |
| Effect of Punica granatum L. Flower Water Extract on Five Common Oral Bacteria and Bacterial Biofilm Formation on Orthodontic Wire. | Vahid Dastjerdi E, Abdolazimi Z, Ghazanfarian M, Amdjadi P, Kamalinejad M, Mahboubi A. | Iran J Public Health | 2014 | |||
| Pathogenicity | Antimicrobial and Antibiofilm Activities of Sulfated Polysaccharides from Marine Algae against Dental Plaque Bacteria. | Jun JY, Jung MJ, Jeong IH, Yamazaki K, Kawai Y, Kim BM. | Mar Drugs | 10.3390/md16090301 | 2018 | |
| Enzymology | Isolation and characterization of high exopolysaccharide-producing Weissella confusa VP30 from young children's feces. | Jin H, Jeong Y, Yoo SH, Johnston TV, Ku S, Ji GE. | Microb Cell Fact | 10.1186/s12934-019-1158-1 | 2019 | |
| Pathogenicity | Promysalin is a salicylate-containing antimicrobial with a cell-membrane-disrupting mechanism of action on Gram-positive bacteria. | Kaduskar RD, Scala GD, Al Jabri ZJH, Arioli S, Musso L, Oggioni MR, Dallavalle S, Mora D. | Sci Rep | 10.1038/s41598-017-07567-0 | 2017 | |
| Comparative study of leaf and stem bark extracts of Parkia biglobosa against enterobacteria. | Millogo-Kone H, Guissou IP, Nacoulma O, Traore AS. | Afr J Tradit Complement Altern Med | 10.4314/ajtcam.v5i3.31279 | 2008 | ||
| Pathogenicity | Diversity of honey stores and their impact on pathogenic bacteria of the honeybee, Apis mellifera. | Erler S, Denner A, Bobis O, Forsgren E, Moritz RF. | Ecol Evol | 10.1002/ece3.1252 | 2014 | |
| Enzymology | Purification and characterization of L-2,4-diaminobutyrate decarboxylase from Acinetobacter calcoaceticus. | Yamamoto S, Tsuzaki Y, Tougou K, Shinoda S. | J Gen Microbiol | 10.1099/00221287-138-7-1461 | 1992 | |
| Identification of the Molecular Determinants Involved in Antimicrobial Activity of Pseudodesmin A, a Cyclic Lipopeptide From the Viscosin Group. | De Vleeschouwer M, Van Kersavond T, Verleysen Y, Sinnaeve D, Coenye T, Martins JC, Madder A. | Front Microbiol | 10.3389/fmicb.2020.00646 | 2020 | ||
| Phylogeny | Sequencing the gene encoding manganese-dependent superoxide dismutase for rapid species identification of enterococci. | Poyart C, Quesnes G, Trieu-Cuot P. | J Clin Microbiol | 10.1128/jcm.38.1.415-418.2000 | 2000 | |
| Phylogeny | 16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria. | Watts GS, Youens-Clark K, Slepian MJ, Wolk DM, Oshiro MM, Metzger GS, Dhingra D, Cranmer LD, Hurwitz BL. | J Appl Microbiol | 10.1111/jam.13590 | 2017 | |
| PVC biodeterioration and DEHP leaching by DEHP-degrading bacteria. | Latorre I, Hwang S, Sevillano M, Montalvo-Rodriguez R. | Int Biodeterior Biodegradation | 10.1016/j.ibiod.2011.12.011 | 2012 | ||
| A new way of producing pediocin in Pediococcus acidilactici through intracellular stimulation by internalized inulin nanoparticles. | Kim WS, Lee JY, Singh B, Maharjan S, Hong L, Lee SM, Cui LH, Lee KJ, Kim G, Yun CH, Kang SK, Choi YJ, Cho CS. | Sci Rep | 10.1038/s41598-018-24227-z | 2018 | ||
| Pathogenicity | Elucidation of the Mode of Action of a New Antibacterial Compound Active against Staphylococcus aureus and Pseudomonas aeruginosa. | Gerits E, Blommaert E, Lippell A, O'Neill AJ, Weytjens B, De Maeyer D, Fierro AC, Marchal K, Marchand A, Chaltin P, Spincemaille P, De Brucker K, Thevissen K, Cammue BP, Swings T, Liebens V, Fauvart M, Verstraeten N, Michiels J. | PLoS One | 10.1371/journal.pone.0155139 | 2016 | |
| Metabolism | Enterocin 96, a novel class II bacteriocin produced by Enterococcus faecalis WHE 96, isolated from Munster cheese. | Izquierdo E, Wagner C, Marchioni E, Aoude-Werner D, Ennahar S. | Appl Environ Microbiol | 10.1128/aem.02772-08 | 2009 | |
| Phylogeny | Evaluation of a rapid direct assay for identification of bacteria and the mec A and van genes from positive-testing blood cultures. | Eigner U, Weizenegger M, Fahr AM, Witte W. | J Clin Microbiol | 10.1128/jcm.43.10.5256-5262.2005 | 2005 | |
| Evidence for horizontal gene transfer in evolution of elongation factor Tu in enterococci. | Ke D, Boissinot M, Huletsky A, Picard FJ, Frenette J, Ouellette M, Roy PH, Bergeron MG. | J Bacteriol | 10.1128/jb.182.24.6913-6920.2000 | 2000 | ||
| Phylogeny | Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequences. | Goh SH, Facklam RR, Chang M, Hill JE, Tyrrell GJ, Burns EC, Chan D, He C, Rahim T, Shaw C, Hemmingsen SM. | J Clin Microbiol | 10.1128/jcm.38.11.3953-3959.2000 | 2000 | |
| Development of a PCR assay for rapid detection of enterococci. | Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.37.11.3497-3503.1999 | 1999 | ||
| Phylogeny | Ecological and Evolutionary Insights into Xanthomonas citri Pathovar Diversity. | Bansal K, Midha S, Kumar S, Patil PB. | Appl Environ Microbiol | 10.1128/aem.02993-16 | 2017 | |
| Phylogeny | Colostrum of healthy Slovenian mothers: microbiota composition and bacteriocin gene prevalence. | Obermajer T, Lipoglavsek L, Tompa G, Treven P, Lorbeg PM, Matijasic BB, Rogelj I. | PLoS One | 10.1371/journal.pone.0123324 | 2014 | |
| Phylogeny | Identification and typing of Lactococcus lactis by matrix-assisted laser desorption ionization-time of flight mass spectrometry. | Tanigawa K, Kawabata H, Watanabe K. | Appl Environ Microbiol | 10.1128/aem.02698-09 | 2010 | |
| Metabolism | Stereoselective microbial dehalorespiration with vicinal dichlorinated alkanes. | De Wildeman S, Diekert G, Van Langenhove H, Verstraete W. | Appl Environ Microbiol | 10.1128/aem.69.9.5643-5647.2003 | 2003 | |
| Pathogenicity | Milk protein fragments induce the biosynthesis of macedocin, the lantibiotic produced by Streptococcus macedonicus ACA-DC 198. | Georgalaki M, Papadelli M, Chassioti E, Anastasiou R, Aktypis A, De Vuyst L, Van Driessche G, Devreese B, Tsakalidou E. | Appl Environ Microbiol | 10.1128/aem.00151-09 | 2010 | |
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| Phylogeny | Vaginal lactobacillus flora of healthy Swedish women. | Vasquez A, Jakobsson T, Ahrne S, Forsum U, Molin G. | J Clin Microbiol | 10.1128/jcm.40.8.2746-2749.2002 | 2002 | |
| Pathogenicity | New real-time PCR assay for rapid detection of methicillin-resistant Staphylococcus aureus directly from specimens containing a mixture of staphylococci. | Huletsky A, Giroux R, Rossbach V, Gagnon M, Vaillancourt M, Bernier M, Gagnon F, Truchon K, Bastien M, Picard FJ, van Belkum A, Ouellette M, Roy PH, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.42.5.1875-1884.2004 | 2004 | |
| Enzymology | Rapid ultrafiltration concentration and biosensor detection of enterococci from large volumes of Florida recreational water. | Leskinen SD, Lim DV. | Appl Environ Microbiol | 10.1128/aem.00052-08 | 2008 | |
| Development of a swine-specific fecal pollution marker based on host differences in methanogen mcrA genes. | Ufnar JA, Ufnar DF, Wang SY, Ellender RD. | Appl Environ Microbiol | 10.1128/aem.00319-07 | 2007 | ||
| Enzymology | Enterolysin A, a cell wall-degrading bacteriocin from Enterococcus faecalis LMG 2333. | Nilsen T, Nes IF, Holo H. | Appl Environ Microbiol | 10.1128/aem.69.5.2975-2984.2003 | 2003 | |
| Surface of lactic acid bacteria: relationships between chemical composition and physicochemical properties. | Boonaert CJ, Rouxhet PG. | Appl Environ Microbiol | 10.1128/aem.66.6.2548-2554.2000 | 2000 | ||
| Enzymology | Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana. | Camu N, De Winter T, Verbrugghe K, Cleenwerck I, Vandamme P, Takrama JS, Vancanneyt M, De Vuyst L. | Appl Environ Microbiol | 10.1128/aem.02189-06 | 2007 | |
| Metabolism | Biodiversity of exopolysaccharides produced by Streptococcus thermophilus strains is reflected in their production and their molecular and functional characteristics. | Vaningelgem F, Zamfir M, Mozzi F, Adriany T, Vancanneyt M, Swings J, De Vuyst L. | Appl Environ Microbiol | 10.1128/aem.70.2.900-912.2004 | 2004 | |
| A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. | Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV. | OMICS | 10.1089/omi.2009.0100 | 2010 | ||
| Analysis of genes encoding D-alanine-D-alanine ligase-related enzymes in Enterococcus casseliflavus and Enterococcus flavescens. | Navarro F, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.38.8.1788 | 1994 | ||
| Comparison of Real-Time PCR and Droplet Digital PCR for the Quantitative Detection of Lactiplantibacillus plantarum subsp. plantarum | Choi CH, Kim E, Yang SM, Kim DS, Suh SM, Lee GY, Kim HY. | Foods | 10.3390/foods11091331 | 2022 | ||
| Genetics | Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes. | Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY. | Foods | 10.3390/foods10112839 | 2021 | |
| Microbacterium xanthum sp. nov. Isolated from Seaweed, with the Reclassification of Microbacterium ihumii Yacouba et al. 2023 as a Later Heterotypic Synonym of Microbacterium tenebrionis Lee and Kim 2023. | Lee SD, Yang HL, Kim IS. | Curr Microbiol | 10.1007/s00284-025-04352-5 | 2025 | ||
| Biochemical Characterization and Genome Analysis of Pseudomonas loganensis sp. nov., a Novel Endophytic Bacterium | Karaman M, Yetiman A, Zhan J, Fidan O. | Microbiologyopen | 2025 | |||
| Phylogeny | Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern. | Subhash Y, Tushar L, Sasikala C, Ramana CV. | Int J Syst Evol Microbiol | 10.1099/ijs.0.052183-0 | 2013 | |
| Phylogeny | Pseudomonas guguanensis sp. nov., a gammaproteobacterium isolated from a hot spring. | Liu YC, Young LS, Lin SY, Hameed A, Hsu YH, Lai WA, Shen FT, Young CC. | Int J Syst Evol Microbiol | 10.1099/ijs.0.047712-0 | 2013 | |
| Phylogeny | Enterococcus alcedinis sp. nov., isolated from common kingfisher (Alcedo atthis). | Frolkova P, Svec P, Sedlacek I, Maslanova I, Cernohlavkova J, Ghosh A, Zurek L, Radimersky T, Literak I. | Int J Syst Evol Microbiol | 10.1099/ijs.0.049833-0 | 2013 | |
| Phylogeny | Cohnella xylanilytica sp. nov. and Cohnella terrae sp. nov., xylanolytic bacteria from soil. | Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS. | Int J Syst Evol Microbiol | 10.1099/ijs.0.017855-0 | 2010 | |
| Metabolism | Cohnella thailandensis sp. nov., a xylanolytic bacterium from Thai soil. | Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS. | Int J Syst Evol Microbiol | 10.1099/ijs.0.015859-0 | 2010 | |
| Phylogeny | Enterococcus thailandicus sp. nov., isolated from fermented sausage ('mum') in Thailand. | Tanasupawat S, Sukontasing S, Lee JS. | Int J Syst Evol Microbiol | 10.1099/ijs.0.65535-0 | 2008 | |
| Phylogeny | Cohnella yongneupensis sp. nov. and Cohnella ginsengisoli sp. nov., isolated from two different soils. | Kim SJ, Weon HY, Kim YS, Anandham R, Jeon YA, Hong SB, Kwon SW. | Int J Syst Evol Microbiol | 10.1099/ijs.0.013581-0 | 2010 | |
| Phylogeny | Tetrathiobacter mimigardefordensis sp. nov., isolated from compost, a betaproteobacterium capable of utilizing the organic disulfide 3,3'-dithiodipropionic acid. | Wubbeler JH, Lutke-Eversloh T, Van Trappen S, Vandamme P, Steinbuchel A. | Int J Syst Evol Microbiol | 10.1099/ijs.0.64126-0 | 2006 | |
| Phylogeny | Lactobacillus garii sp. nov., isolated from a fermented cassava product. | Diaz M, Sayavedra L, Atter A, Mayer MJ, Saha S, Amoa-Awua W, Narbad A. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004121 | 2020 | |
| Genetics | Non-contiguous finished genome sequencing and description of Enterococcus timonensis sp. nov. isolated from human sputum. | Mbogning Fonkou MD, Bilen M, Gouba N, Khelaifia S, Cadoret F, Nguyen TT, Richez M, Bittar F, Fournier PE, Raoult D, Dubourg G. | New Microbes New Infect | 10.1016/j.nmni.2019.100532 | 2019 | |
| Genome taxonomy of the genus Neptuniibacter and proposal of Neptuniibacter victor sp. nov. isolated from sea cucumber larvae. | Kudo R, Yamano R, Yu J, Koike S, Haditomo AHC, de Freitas MAM, Tsuchiya J, Mino S, Thompson F, Romalde JL, Kasai H, Sakai Y, Sawabe T. | PLoS One | 10.1371/journal.pone.0290060 | 2023 | ||
| Phylogeny | Enterococcus olivae sp. nov., isolated from Spanish-style green-olive fermentations. | Lucena-Padros H, Gonzalez JM, Caballero-Guerrero B, Ruiz-Barba JL, Maldonado-Barragan A | Int J Syst Evol Microbiol | 10.1099/ijs.0.062208-0 | 2014 | |
| Phylogeny | Enterococcus saccharolyticus subsp. taiwanensis subsp. nov., isolated from broccoli. | Chen YS, Lin YH, Pan SF, Ji SH, Chang YC, Yu CR, Liou MS, Wu HC, Otoguro M, Yanagida F, Liao CC, Chiu CM, Huang BQ | Int J Syst Evol Microbiol | 10.1099/ijs.0.052761-0 | 2013 |
| #9036 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20726 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40583 | ; Curators of the CIP; |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #122335 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103246 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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