Name: Yersinia enterocolitica subsp. palearctica Y11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5217

Type strain:

Species: Yersinia enterocolitica subsp. palearctica

Strain Designation: Y11

Culture col. no.: DSM 13030, CCUG 52867, CECT 9144, CIP 106945, WDCM 00216

Strain history: CIP <- 2001, H. Neubauer, BSW Sanitätsakademie des Bundeswehr, München, Germany: strain Y11

NCBI tax ID(s): 150053 (subspecies)

SI-ID 49390

DSM 13030, CIP 106945, CCUG 52867

Special Collections

Other strains from Yersinia enterocolitica subsp. palearctica

Section

Yersinia enterocolitica subsp. palearctica Y11 is an aerobe, Gram-negative bacterium that has multiple antibiotic resistances and was isolated from human stool.

antibiotic resistance
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Yersinia*
	Species	**Yersinia enterocolitica subsp. palearctica**
	Full Scientific Name (LPSN)	Yersinia enterocolitica subsp. palearctica Neubauer et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #119060]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #119060]	Cell shape	rod-shaped

[Ref.: #119060]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4877]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #4877]

Culture medium growth

[Ref.: #4877]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4877]

Culture medium composition

expand / minimize

[Ref.: #4877]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4877]

Culture medium growth

[Ref.: #4877]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4877]

Culture medium composition

expand / minimize

[Ref.: #41870]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41870]

Culture medium growth

[Ref.: #41870]

Culture medium composition

expand / minimize

[Ref.: #4877]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #4877]

Culture medium growth

[Ref.: #4877]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4877]

Culture medium composition

expand / minimize

[Ref.: #119060]

Culture medium

CIP Medium 72

[Ref.: #119060]

Culture medium growth

[Ref.: #119060]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4877]		growth	28 °C
[Ref.: #4877]		growth	30 °C
[Ref.: #41870]		growth	30 °C
[Ref.: #59691]		growth	30 °C
[Ref.: #119060]		growth	10-41 °C
[Ref.: #119060]	no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59691]	Oxygen tolerance	aerobe
[Ref.: #119060]	Oxygen tolerance	facultative anaerobe

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Reference

[Ref.: #4877]
Mueller Hinton
30

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
12
32
6
16
42
38
34-36
30
28-30
20
22
resistant0
12
resistant0
30-32
30-32
16
26-28
20
resistant0
18
22
18
24-26
30
10
40
30
10
resistant0
10
resistant0
34-36

Only first 15 entries are displayed. Click here to see all.

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	amygdalin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	arbutin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68372]	cellobiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68372]	D-arabinose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fructose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fucose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-galactose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-glucose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	D-lyxose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannitol ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	D-mannose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-ribose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-tagatose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-xylose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	erythritol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	esculin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	galactitol ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68372]	gentiobiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	gluconate ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #119060]	glucose ChEBI	+	fermentation
[Ref.: #68372]	glycerol ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	glycogen ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	inulin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabinose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	L-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-fucose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-rhamnose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68372]	L-sorbose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-xylose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #119060]	lactose ChEBI	+	fermentation
[Ref.: #68372]	lactose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68372]	maltose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #119060]	mannitol ChEBI	+	fermentation
[Ref.: #68372]	melezitose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	melibiose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68372]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-mannoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl beta-D-xylopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	myo-inositol ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	N-acetylglucosamine ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #119060]	nitrate ChEBI	+	reduction
[Ref.: #119060]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68372]	Potassium 2-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	Potassium 5-ketogluconate ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	raffinose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	ribitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	salicin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #119060]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68372]	sorbitol ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	starch ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	sucrose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68372]	trehalose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68372]	turanose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68372]	xylitol ChEBI	-	assimilation	* from API 50CH assim
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #119060]	indole ChEBI	yes
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #119060]	acetoin ChEBI	-
[Ref.: #119060]	glucose ChEBI		+
[Ref.: #68368]	indole ChEBI			-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119060]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #119060]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119060]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119060]	gelatinase	-
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #119060]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119060]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #119060]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119060]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #119060]	urease	+	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #4877]	18013	+	-	-	+	-	-	+	-	-	-	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #4877]	17788	+	-	-	+	-	-	+	-	-	+	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH assim:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Assimilation of glycerolGLY	Assimilation of erythritolERY	Assimilation of D-arabinoseDARA	Assimilation of L-arabinoseLARA	Assimilation of D-riboseRIB	Assimilation of D-xyloseDXYL	Assimilation of L-xyloseLXYL	Assimilation of D-adonitolADO	Assimilation of methyl beta-D-xylopyranosideMDX	Assimilation of D-galactoseGAL	Assimilation of D-glucoseGLU	Assimilation of D-fructoseFRU	Assimilation of D-mannoseMNE	Assimilation of L-sorboseSBE	Assimilation of L-rhamnoseRHA	Assimilation of dulcitolDUL	Assimilation of inositolINO	Assimilation of D-mannitolMAN	Assimilation of sorbitolSOR	Assimilation of methyl alpha-D-mannopyranosideMDM	Assimilation of methyl alpha-D-glucopyranosideMDG	Assimilation of N-acetyl-glucosamineNAG	Assimilation of amygdalinAMY	Assimilation of arbutinARB	Assimilation of esculinESC	Assimilation of salicinSAL	Assimilation of cellobioseCEL	Assimilation of maltoseMAL	Assimilation of lactoseLAC	Assimilation of melibioseMEL	Assimilation of sucroseSAC	Assimilation of trehaloseTRE	Assimilation of inulinINU	Assimilation of melezitoseMLZ	Assimilation of raffinoseRAF	Assimilation of starchAMD	Assimilation of glycogenGLYG	Assimilation of xylitolXLT	Assimilation of gentiobioseGEN	Assimilation of turanoseTUR	Assimilation of D-lyxoseLYX	Assimilation of D-tagatoseTAG	Assimilation of D-fucoseDFUC	Assimilation of L-fucoseLFUC	Assimilation of D-arabitolDARL	Assimilation of L-arabitolLARL	Assimilation of gluconateGNT	Assimilation of 2-Ketogluconate2KG	Assimilation of 5-Ketogluconate5KG
[Ref.: #4877]	99	-	+	-	-	+	+	-	-	-	-	+	+	+	+	+	-	+	+	+	+	-	-	+	-	+	-	-	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119060]	1917	not determinedn.d.	+	+	+	+	+	+	-	+	-	+	+	-	-	+	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119060]	9932	-	+	+	+	+	+	+	+	-	-	+	+	+	+	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4877]	Sample type/isolated from	human stool
[Ref.: #4877]	Geographic location (country and/or sea, region)	Hamburg
[Ref.: #4877]	Country	Germany
[Ref.: #4877]	Country ISO 3 Code	DEU
[Ref.: #4877]	Continent	Europe
[Ref.: #4877]	Geographic location	53.5753°/10.0153°

[Ref.: #59691]	Sample type/isolated from	Human stool
[Ref.: #59691]	Country	Germany
[Ref.: #59691]	Country ISO 3 Code	DEU
[Ref.: #59691]	Continent	Europe

[Ref.: #119060]	Sample type/isolated from	Human, Feces
[Ref.: #119060]	Geographic location (country and/or sea, region)	München
[Ref.: #119060]	Country	Germany
[Ref.: #119060]	Country ISO 3 Code	DEU
[Ref.: #119060]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U63135 (>99% sequence identity) for Yersiniaceae from Microbeatlas

Aquatic Samples	1559
Soil Samples	402
Animal Samples	3499
Plant Samples	339
Total Samples	5799

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4877]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119060]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4877]	Yersinia enterocolitica 16S ribosomal RNA gene, partial sequence	U63135	1367	GenBank ENA	630 tax ID
[Ref.: #20218]	Yersinia enterocolitica subsp. palearctica strain DSM 13030 16S ribosomal RNA gene, partial sequence	FJ717344	1484	GenBank ENA	150053 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Yersinia enterocolitica subsp. palearctica Y11	GCA_000253175	complete	GenBank ENA	930944 tax ID	*
[Ref.: #66792]	Yersinia enterocolitica subsp. palearctica Y11	930944.6	complete	PATRIC	930944 tax ID	*
[Ref.: #66792]	Yersinia enterocolitica subsp. palearctica Y11	930944.24	plasmid	PATRIC	930944 tax ID	*

[Ref.: #4877]

GC-content

44.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Yersinia enterocolitica subsp. palearctica Y11 Y11 NCBI: GCA_000253175.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.454	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	65.472	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.7	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.415	no

Availability in culture collections External links

[Ref.: #4877]

Culture collection no.

DSM 13030, CCUG 52867, CECT 9144, CIP 106945, WDCM 00216

[Ref.: #74709]

SI-ID 49390

References

#4877

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13030

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41870 ; Curators of the CIP;
#59691 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52867

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#68372

Automatically annotated from API 50CH assim .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74709

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49390.1 )

#119060 Collection of Institut Pasteur ; Curators of the CIP; CIP 106945
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Yersinia enterocolitica subsp. palearctica in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Yersinia enterocolitica subsp. palearctica Y11 Y11

Change proposal

Change proposal