Name: Proteus penneri 1808-73
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5065

Type strain:

Species: Proteus penneri

Strain Designation: 1808-73

Culture col. no.: DSM 4544, ATCC 33519, CCUG 15722, CECT 864, NCTC 12737, CDC 1808-73, JCM 3948, BCRC 14123, CIP 103030, LMG 7877, NBRC 105705, NCIMB 12597

Strain history: CIP <- 1987, ATCC <- CDC: strain 1808-73 <- Alaska State Hlth. Dept., USA

NCBI tax ID(s): 102862 (species)

SI-ID 10834

LMG 7877, ATCC 33519, CCUG 15722, CECT 864, DSM 4544, CIP 103030, JCM 3948, NCIMB 12597, CCRC 14123, NCIMB 12957, NCTC 12737, BCRC 14123

Special Collections

Other strains from Proteus penneri

Section

Proteus penneri 1808-73 is a Gram-negative bacterium that was isolated from urine.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Proteus*
	Species	**Proteus penneri**
	Full Scientific Name (LPSN)	Proteus penneri Hickman et al. 1983

Information on morphological and physiological properties Morphology

[Ref.: #121660]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #121660]	Cell shape	rod-shaped

[Ref.: #121660]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1725]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1725]

Culture medium growth

[Ref.: #1725]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1725]

Culture medium composition

expand / minimize

[Ref.: #34100]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34100]

Culture medium growth

[Ref.: #34100]

Culture medium composition

expand / minimize

[Ref.: #1725]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #1725]

Culture medium growth

[Ref.: #1725]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1725]

Culture medium composition

expand / minimize

[Ref.: #1725]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #1725]

Culture medium growth

[Ref.: #1725]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1725]

Culture medium composition

expand / minimize

[Ref.: #121660]

Culture medium

CIP Medium 72

[Ref.: #121660]

Culture medium growth

[Ref.: #121660]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121660]

Culture medium

CIP Medium 3

[Ref.: #121660]

Culture medium growth

[Ref.: #121660]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1725]	growth	37 °C
[Ref.: #34100]	growth	30 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.231
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68368]		indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1725]	18039	-	-	-	-	-	+/-	+	+	-	+	+/-	+	-	-	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1725]	16632	-	-	-	-	-	+	+	+	-	-	-	+	-	-	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1725]	16631	-	-	-	-	-	+	+	+	-	+	+	+	-	-	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1725]	Sample type/isolated from	urine

[Ref.: #67770]	Sample type/isolated from	Urine

[Ref.: #121660]	Sample type/isolated from	Human, Urine
[Ref.: #121660]	Geographic location (country and/or sea, region)	Anchorage, Alaska
[Ref.: #121660]	Country	United States of America
[Ref.: #121660]	Country ISO 3 Code	USA
[Ref.: #121660]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Urine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ885258 (>99% sequence identity) for Proteus from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	74
Plant Samples	1
Total Samples	89

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1725]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121660]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Proteus penneri gene for 16S rRNA, partial sequence, strain: NBRC 105705.	AB682277	1468	GenBank ENA	102862 tax ID	*
[Ref.: #20218]	Proteus penneri strain ATCC 33519 16S ribosomal RNA gene, partial sequence	FJ971869	797	GenBank ENA	102862 tax ID	*
[Ref.: #20218]	Proteus penneri strain NCTC 12737 16S ribosomal RNA gene, partial sequence	DQ885258	1383	GenBank ENA	102862 tax ID	*
[Ref.: #124043]	Proteus penneri partial 16S rRNA gene, type strain DSM 4544T	LN809884	1445	GenBank ENA	102862 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Proteus penneri ATCC 33519	GCA_003144535	contig	GenBank ENA	102862 tax ID
[Ref.: #67770]	Proteus penneri NCTC12737	GCA_900455015	contig	GenBank ENA	102862 tax ID
[Ref.: #66792]	Proteus penneri strain ATCC 33519	102862.7	wgs	PATRIC	102862 tax ID	*
[Ref.: #66792]	Proteus penneri strain FDAARGOS_874	102862.20	complete	PATRIC	102862 tax ID	*
[Ref.: #66792]	Proteus penneri strain NCTC12737	102862.13	wgs	PATRIC	102862 tax ID	*
[Ref.: #66792]	Proteus penneri ATCC 33519	2858358578	draft	JGI IMG/M	102862 tax ID	*

[Ref.: #67770]

GC-content

38 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Proteus penneri strain FDAARGOS_874 strain Not applicable PATRIC: 102862.20
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Proteus penneri strain FDAARGOS_874 strain Not applicable PATRIC: 102862.20
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.985	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.791	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.231	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	78.768	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.697	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.676	no

Availability in culture collections External links

[Ref.: #1725]

Culture collection no.

DSM 4544, ATCC 33519, CCUG 15722, CECT 864, NCTC 12737, CDC 1808-73, JCM 3948, BCRC 14123, CIP 103030, LMG 7877, NBRC 105705, NCIMB 12597

[Ref.: #74560]

SI-ID 10834

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteus columbae sp. nov., isolated from a pigeon in Ma'anshan, China.	Dai H, Wang Y, Fang Y, Xiao T, Huang Z, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002541	2018	*
Genetics	Structure and epitope specificity of the O-specific polysaccharide of Proteus penneri strain 12 (ATCC 33519) containing the amide of D-galacturonic acid with L-threonine.	Sidorczyk Z, Swierzko A, Knirel YA, Vinogradov EV, Chernyak AY, Kononov LO, Cedzynski M, Rozalski A, Kaca W, Shashkov AS, et al.	Eur J Biochem		1995	*
Phylogeny	Identification of Proteus penneri sp. nov., formerly known as Proteus vulgaris indole negative or as Proteus vulgaris biogroup 1.	Hickman FW, Steigerwalt AG, Farmer JJ 3rd, Brenner DJ	J Clin Microbiol	10.1128/jcm.15.6.1097-1102.1982	1982	*

References

#1725

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4544

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34100 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74560

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10834.1 )

#121660 Collection of Institut Pasteur ; Curators of the CIP; CIP 103030

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Proteus penneri strain FDAARGOS_874 strain Not applicable

Proteus penneri strain FDAARGOS_874 strain Not applicable

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