Name: Parahaliea mediterranea 7SM29
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 497

Type strain:

Species: Parahaliea mediterranea

Strain Designation: 7SM29

Culture col. no.: DSM 21924, CECT 7447

Strain history: <- M. J. Pujalte, Univ. València, Campus de Burjassot, Spain; 7SM29

NCBI tax ID(s): 651086 (species)

SI-ID 370393

CECT 7447, DSM 21924

Special Collections

Section

Parahaliea mediterranea 7SM29 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater at 10 m depth.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Halieaceae*
	Genus	*Parahaliea*
	Species	**Parahaliea mediterranea**
	Full Scientific Name (LPSN)	Parahaliea mediterranea (Lucena et al. 2010) Lin et al. 2015

Synonym

Haliea mediterranea

Information on morphological and physiological properties Morphology

[Ref.: #29618]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.462

[Ref.: #29618]	Cell length	1.2 µm

[Ref.: #29618]	Cell width	0.45 µm

[Ref.: #29618]	Cell shape	rod-shaped

[Ref.: #29618]	Motility	yes

[Ref.: #29618]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16037]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16037]

Culture medium growth

[Ref.: #16037]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16037]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16037]			growth	20-28 °C
[Ref.: #29618]			growth	15-40 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29618]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.902
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29618]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #29618]	acetate ChEBI	+	carbon source
[Ref.: #29618]	alanine ChEBI	+	carbon source
[Ref.: #29618]	arginine ChEBI	+	carbon source
[Ref.: #29618]	aspartate ChEBI	+	carbon source
[Ref.: #29618]	esculin ChEBI	+	hydrolysis
[Ref.: #29618]	glutamate ChEBI	+	carbon source
[Ref.: #29618]	nitrate ChEBI	+	reduction
[Ref.: #29618]	propionate ChEBI	+	carbon source
[Ref.: #29618]	putrescine ChEBI	+	carbon source
[Ref.: #29618]	pyruvate ChEBI	+	carbon source
[Ref.: #29618]	threonine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29618]	acid phosphatase	+	3.1.3.2
[Ref.: #29618]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29618]	catalase	+	1.11.1.6
[Ref.: #29618]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29618]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16037]	Sample type/isolated from	seawater at 10 m depth
[Ref.: #16037]	Geographic location (country and/or sea, region)	western Mediterranean Sea off Vinaròs coast
[Ref.: #16037]	Country	Spain
[Ref.: #16037]	Country ISO 3 Code	ESP
[Ref.: #16037]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN398053 (>99% sequence identity) for Parahaliea mediterranea subclade from Microbeatlas

Aquatic Samples	99
Soil Samples	12
Animal Samples	14
Plant Samples
Total Samples	125

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16037]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16037]	Haliea mediterranea partial 16S rRNA gene, type strain 7SM29T	FN398053	1489	GenBank ENA	651086 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parahaliea mediterranea DSM 21924	GCA_003402235	contig	GenBank ENA	651086 tax ID	*
[Ref.: #66792]	Parahaliea mediterranea strain DSM 21924	651086.3	wgs	PATRIC	651086 tax ID	*
[Ref.: #66792]	Parahaliea mediterranea DSM 21924	2831348850	draft	JGI IMG/M	651086 tax ID	*

[Ref.: #16037]	GC-content	62.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29618]	GC-content	62.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parahaliea mediterranea strain DSM 21924 PATRIC: 651086.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parahaliea mediterranea strain DSM 21924 PATRIC: 651086.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.462	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.103	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.902	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.671	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.961	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.598	no

Availability in culture collections External links

[Ref.: #16037]

Culture collection no.

DSM 21924, CECT 7447

[Ref.: #70176]

SI-ID 370393

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment.	Jiang S, Lian FB, Sun YY, Zhang XK, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004959	2021	*
Phylogeny	Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea.	Liu Y, Du J, Zhang J, Lai Q, Shao Z, Zhu H	J Microbiol	10.1007/s12275-020-9405-z	2020	*
Phylogeny	Parahaliea aestuarii sp. nov., isolated from the Asan Bay estuary.	Jung HS, Jeong SE, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001830	2017	*
Phylogeny	Haliea atlantica sp. nov., isolated from seawater, transfer of Haliea mediterranea to Parahaliea gen. nov. as Parahaliea mediterranea comb. nov. and emended description of the genus Haliea.	Lin CY, Zhang XY, Liu A, Liu C, Song XY, Su HN, Qin QL, Xie BB, Zhang YZ, Chen XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.000431	2015	*
Phylogeny	Haliea mediterranea sp. nov., a marine gammaproteobacterium.	Lucena T, Pascual J, Garay E, Arahal DR, Macian MC, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/ijs.0.017061-0	2009	*

References

#16037

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21924

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29618

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26008 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70176

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370393.1 )

#26008

IJSEM 1844 2010 ( DOI 10.1099/ijs.0.017061-0 , PubMed 19767360 )

* These data were automatically processed and therefore are not curated

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Parahaliea mediterranea strain DSM 21924

Parahaliea mediterranea strain DSM 21924

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