Name: Klebsiella pneumoniae subsp. pneumoniae C37
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4958

Type strain:

Species: Klebsiella pneumoniae subsp. pneumoniae

Strain Designation: C37

Culture col. no.: DSM 30102, ATCC 13882, IFO 13541, NBRC 13541, NCIB 8267, NCTC 8172, CCUG 28450, NCDC 388-68, JCM 20507, IAM 12351

Strain history: IAM 12351 <-- ATCC 13882 <-- NCTC 8172 ("Klebsiella aerogenes") <-- E. Taylor C37.

NCBI tax ID(s): 72407 (subspecies)

Other strains from Klebsiella pneumoniae subsp. pneumoniae

Section

Klebsiella pneumoniae subsp. pneumoniae C37 is a mesophilic human pathogen that was isolated from water.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Species	**Klebsiella pneumoniae subsp. pneumoniae**
	Full Scientific Name (PNU)	Klebsiella pneumoniae subsp. pneumoniae (Schroeter 1886) Ørskov 1984

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.97

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35571]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35571]

Culture medium growth

[Ref.: #35571]

Culture medium composition

expand / minimize

[Ref.: #9133]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #9133]

Culture medium growth

[Ref.: #9133]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9133]

Culture medium composition

expand / minimize

[Ref.: #9133]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #9133]

Culture medium growth

[Ref.: #9133]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9133]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9133]	growth	37 °C
[Ref.: #35571]	growth	30 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #9133]	Temperature range	mesophilic
[Ref.: #35571]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.932

[Ref.: #9133]

Name of produced compound

bacteriocin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E, API 20E
[Ref.: #68374]	cellobiose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68374]	D-arabitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	D-mannitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68374]	L-arabinose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	lysine ChEBI	+	degradation	* from API ID32E, API 20E
[Ref.: #68374]	malonate ChEBI	+	assimilation	* from API ID32E
[Ref.: #68374]	maltose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	myo-inositol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E, API 20E
[Ref.: #68374]	palatinose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	sucrose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	trehalose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	-	energy source	* from API ID32E, API 20E
[Ref.: #68374]	urea ChEBI	+	hydrolysis	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68374]	indole ChEBI	* from API ID32E, API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68374]		indole ChEBI		-	* from API ID32E, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68374]	alpha-galactosidase	+	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20E
[Ref.: #68374]	beta-galactosidase	+	3.2.1.23	* from API ID32E, API 20E
[Ref.: #68374]	beta-glucosidase	+	3.2.1.21	* from API ID32E
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68374]	L-aspartate arylamidase	+	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	-		* from API ID32E
[Ref.: #68374]	lysine decarboxylase	+	4.1.1.18	* from API ID32E, API 20E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E, API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68374]	urease	+	3.5.1.5	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9133]	15536	+	-	+	-	+	-	+	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9133]	14138	+	-	+	-	+	-	+	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #49246]	1041	-	-	+	+	-	+	-	-	+	+	+	+	+	+	-	+	-	-	+	+	+	+	+	-	+	+	+	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9133]	Sample type/isolated from	water

[Ref.: #49246]	Sample type/isolated from	Water

[Ref.: #67770]	Sample type/isolated from	Water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X93214 (>99% sequence identity) for Klebsiella pneumoniae from Microbeatlas

Aquatic Samples	3887
Soil Samples	1141
Animal Samples	41102
Plant Samples	1362
Total Samples	47492

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9133]	Pathogenicity (human)	yes
[Ref.: #9133]	Pathogenicity (animal)	yes
[Ref.: #9133]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Klebsiella pneumoniae gene for 16S rRNA, partial sequence, strain: NBRC 13541	AB680431	1465	ENA	573 tax ID	*
[Ref.: #20218]	K.pneumoniae 16S rRNA gene	X93214	1458	ENA	573 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella pneumoniae C37	GCA_017291375	contig	GenBank	573 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae NCTC8172	GCA_900451575	contig	GenBank	573 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae strain NCTC8172	573.20119	wgs	PATRIC	573 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klebsiella pneumoniae strain NCTC8172 PATRIC: 573.20119
[Ref.: #69480]	gram-positive	no	99.97	yes
[Ref.: #69480]	spore-forming	no	99.932	no
[Ref.: #69480]	anaerobic	no	99.162	no
[Ref.: #69480]	thermophile	no	98.475	no
[Ref.: #69480]	motile	yes	69.023	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Klebsiella pneumoniae strain NCTC8172 PATRIC: 573.20119
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #9133]

Culture collection no.

DSM 30102, ATCC 13882, IFO 13541, NBRC 13541, NCIB 8267, NCTC 8172, CCUG 28450, NCDC 388-68, JCM 20507, IAM 12351

[Ref.: #20218]

Associated Passport(s) in StrainInfo

12645, 12646, 486713, 12649, 12650

References

#9133

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30102

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35571 ; Curators of the CIP;
#49246 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28450

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68374

Automatically annotated from API ID32E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Search for species Klebsiella pneumoniae subsp. pneumoniae in external resources:
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Klebsiella pneumoniae strain NCTC8172

Klebsiella pneumoniae strain NCTC8172

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Change proposal