Name: Saccharophagus degradans 2-40
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 470

Type strain:

Species: Saccharophagus degradans

Strain Designation: 2-40

Culture col. no.: DSM 17024, ATCC 43961, CCUG 66513

Strain history: <- R. M. Weiner <- G. Andrykovitch; 2-40. Strain shipped as an actively growing culture, but survives only 3 days in the post, making shipping outside of Europe problematic. Customers ordering from outside of Europe should inquire before ordering the strain

NCBI tax ID(s): 203122 (strain), 86304 (species)

SI-ID 87752

ATCC 43961, DSM 17024

Section

Saccharophagus degradans 2-40 is an aerobe, heterotroph, mesophilic bacterium that was isolated from decomposing marsh grass.

Gram-negative
motile
rod-shaped
aerobe
heterotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Saccharophagus*
	Species	**Saccharophagus degradans**
	Full Scientific Name (LPSN)	Saccharophagus degradans Ekborg et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #23294]	Gram stain	negative

[Ref.: #23294]	Cell length	1.5-3.0 µm

[Ref.: #23294]	Cell width	0.5 µm

[Ref.: #23294]	Cell shape	rod-shaped
[Ref.: #23294]	Cell shape	pleomorphic-shaped

[Ref.: #23294]	Motility	yes

[Ref.: #23294]	Flagellum arrangement	monotrichous, polar

[Ref.: #23294]

Colony color

cream

[Ref.: #23294]	Pigment production	yes
[Ref.: #23294]	Pigmentation color	Black
[Ref.: #23294]	Pigment name	Eumelanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6690]

Culture medium

HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)

[Ref.: #6690]

Culture medium growth

[Ref.: #6690]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6690]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6690]	growth	28 °C
[Ref.: #23294]	growth	4-37 °C
[Ref.: #23294]	optimum	30 °C
[Ref.: #63341]	growth	30 °C

[Ref.: #6690]	Temperature range	mesophilic
[Ref.: #23294]	Temperature range	mesophilic
[Ref.: #63341]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23294]			optimum	7.5
[Ref.: #23294]			growth	4.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6690]	Oxygen tolerance	aerobe
[Ref.: #23294]	Oxygen tolerance	aerobe
[Ref.: #63341]	Oxygen tolerance	aerobe

[Ref.: #23294]

Nutrition type

heterotroph

	Salt	Tested relation		Salt conc.
[Ref.: #23294]	Sea Salts (S9883)	no	growth	0	%
[Ref.: #23294]	Sea Salts (S9883)		growth	1-10	%
[Ref.: #23294]	Sea Salts (S9883)		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23294]	agar ChEBI	+	carbon source
[Ref.: #23294]	alginate ChEBI	+	carbon source
[Ref.: #23294]	cellulose ChEBI	+	carbon source
[Ref.: #23294]	chitin ChEBI	+	carbon source
[Ref.: #23294]	fucoidan ChEBI	+	carbon source
[Ref.: #23294]	gelatin ChEBI	+	assimilation
[Ref.: #23294]	laminarin ChEBI	+	carbon source
[Ref.: #23294]	nitrate ChEBI	+	reduction
[Ref.: #23294]	pectin ChEBI	+	carbon source
[Ref.: #23294]	pullulan ChEBI	+	carbon source
[Ref.: #23294]	starch ChEBI	+	carbon source
[Ref.: #23294]	tyrosine ChEBI	+	hydrolysis
[Ref.: #23294]	xylan ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23294]		catalase	+	1.11.1.6
[Ref.: #23294]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	d-xylose degradation	81.82	9 of 11
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	purine metabolism	72.34	68 of 94
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	pyrimidine metabolism	57.78	26 of 45
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	oxidative phosphorylation	51.65	47 of 91
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	carotenoid biosynthesis	45.45	10 of 22
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	vitamin B12 metabolism	35.29	12 of 34
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6690]	Sample type/isolated from	decomposing marsh grass
[Ref.: #6690]	Geographic location (country and/or sea, region)	VA, Chesapeake Bay
[Ref.: #6690]	Country	USA
[Ref.: #6690]	Country ISO 3 Code	USA
[Ref.: #6690]	Continent	North America

[Ref.: #23294]	Sample type/isolated from	surface of degrading salt marsh cord grass, Spartina alterniflora

[Ref.: #63341]	Sample type/isolated from	Decomposing marsh grass
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Environmental	#Terrestrial	#Salt marsh
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF055269 (>99% sequence identity) for Saccharophagus degradans subclade from Microbeatlas

Aquatic Samples	962
Soil Samples	62
Animal Samples	56
Plant Samples	22
Total Samples	1102

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6690]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6690]	Saccharophagus degradans 2-40 16S ribosomal RNA gene, partial sequence	AF055269	1431	ENA	203122 tax ID
[Ref.: #20218]	Bacterium 2-40 16S ribosomal RNA gene, partial sequence	AF063028	519	ENA	203122 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharophagus degradans 2-40	GCA_000013665	complete	GenBank	203122 tax ID	*
[Ref.: #66792]	Saccharophagus degradans 2-40	203122.15	complete	PATRIC	203122 tax ID	*
[Ref.: #66792]	Saccharophagus degradans 2-40	637000249	complete	JGI IMG/M	86304 tax ID	*

[Ref.: #23294]

GC-content

45.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharophagus degradans 2-40 2-40 NCBI: GCA_000013665.1
[Ref.: #69480]	motile	yes	90.715	yes
[Ref.: #69480]	flagellated	yes	93.806	yes
[Ref.: #69480]	gram-positive	no	98.898	yes
[Ref.: #69480]	anaerobic	no	99.091	yes
[Ref.: #69480]	halophile	no	60.306	no
[Ref.: #69480]	spore-forming	no	94.059	no
[Ref.: #69480]	thermophile	no	98.297	no
[Ref.: #69480]	glucose-util	yes	90.527	no
[Ref.: #69480]	aerobic	yes	87.347	no
[Ref.: #69480]	glucose-ferment	no	83.909	no

Availability in culture collections External links

[Ref.: #6690]

Culture collection no.

DSM 17024, ATCC 43961, CCUG 66513

[Ref.: #70149]

SI-ID 87752

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Enhanced glycolic acid yield through xylose and cellobiose utilization by metabolically engineered Escherichia coli.	Cabulong RB, Banares AB, Nisola GM, Lee WK, Chung WJ	Bioprocess Biosyst Eng	10.1007/s00449-020-02502-6	2021	*
Enzymology	Specific hydrolysis of curdlan with a novel glycoside hydrolase family 128 beta-1,3-endoglucanase containing a carbohydrate-binding module.	Jia X, Wang C, Du X, Peng H, Liu L, Xiao Y, He C	Carbohydr Polym	10.1016/j.carbpol.2020.117276	2020	*
Phylogeny	Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae.	Lucena T, Arahal DR, Sanz-Saez I, Acinas SG, Sanchez O, Aznar R, Pedros-Alio C, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003906	2020	*
Metabolism	Molecular Cloning and Characterization of a Novel Cold-Adapted Alkaline 1,3-alpha-3,6-Anhydro-L-galactosidase, Ahg558, from Gayadomonas joobiniege G7.	Asghar S, Lee CR, Chi WJ, Kang DK, Hong SK	Appl Biochem Biotechnol	10.1007/s12010-019-02963-w	2019	*
Enzymology	Identification and biochemical characterization of a novel cold-adapted 1,3-alpha-3,6-anhydro-L-galactosidase, Ahg786, from Gayadomonas joobiniege G7.	Asghar S, Lee CR, Park JS, Chi WJ, Kang DK, Hong SK	Appl Microbiol Biotechnol	10.1007/s00253-018-9277-x	2018	*
Biotechnology	Model-Based Complete Enzymatic Production of 3,6-Anhydro-l-galactose from Red Algal Biomass.	Pathiraja D, Lee S, Choi IG	J Agric Food Chem	10.1021/acs.jafc.8b01792	2018	*
Metabolism	Consolidated bioprocessing for production of polyhydroxyalkanotes from red algae Gelidium amansii.	Sawant SS, Salunke BK, Kim BS	Int J Biol Macromol	10.1016/j.ijbiomac.2017.11.084	2017	*
Metabolism	Identification of 2-keto-3-deoxy-d-Gluconate Kinase and 2-keto-3-deoxy-d-Phosphogluconate Aldolase in an Alginate-Assimilating Bacterium, Flavobacterium sp. Strain UMI-01.	Nishiyama R, Inoue A, Ojima T	Mar Drugs	10.3390/md15020037	2017	*
Enzymology	Enzymatic liquefaction of agarose above the sol-gel transition temperature using a thermostable endo-type beta-agarase, Aga16B.	Kim JH, Yun EJ, Seo N, Yu S, Kim DH, Cho KM, An HJ, Kim JH, Choi IG, Kim KH	Appl Microbiol Biotechnol	10.1007/s00253-016-7831-y	2016	*
Enzymology	The first bacterial beta-1,6-endoglucanase from Saccharophagus degradans 2-40(T) for the hydrolysis of pustulan and laminarin.	Wang D, Kim DH, Yun EJ, Park YC, Seo JH, Kim KH	Appl Microbiol Biotechnol	10.1007/s00253-016-7753-8	2016	*
Metabolism	A Novel Glycoside Hydrolase Family 5 beta-1,3-1,6-Endoglucanase from Saccharophagus degradans 2-40T and Its Transglycosylase Activity.	Wang D, Kim DH, Seo N, Yun EJ, An HJ, Kim JH, Kim KH	Appl Environ Microbiol	10.1128/AEM.00635-16	2016	*
Enzymology	Biochemical and Structural Characterization of a Five-domain GH115 alpha-Glucuronidase from the Marine Bacterium Saccharophagus degradans 2-40T.	Wang W, Yan R, Nocek BP, Vuong TV, Di Leo R, Xu X, Cui H, Gatenholm P, Toriz G, Tenkanen M, Savchenko A, Master ER	J Biol Chem	10.1074/jbc.M115.702944	2016	*
Enzymology	Characterization of the biochemical properties of recombinant Xyn10C from a marine bacterium, Saccharophagus degradans 2-40.	Ko JK, Ko H, Kim KH, Choi IG	Bioprocess Biosyst Eng	10.1007/s00449-016-1548-2	2016	*
Metabolism	Putative Alginate Assimilation Process of the Marine Bacterium Saccharophagus degradans 2-40 Based on Quantitative Proteomic Analysis.	Takagi T, Morisaka H, Aburaya S, Tatsukami Y, Kuroda K, Ueda M	Mar Biotechnol (NY)	10.1007/s10126-015-9667-3	2015	*
Metabolism	A rapid, sensitive, simple plate assay for detection of microbial alginate lyase activity.	Sawant SS, Salunke BK, Kim BS	Enzyme Microb Technol	10.1016/j.enzmictec.2015.05.003	2015	*
Metabolism	Comparative study of MnO2 nanoparticle synthesis by marine bacterium Saccharophagus degradans and yeast Saccharomyces cerevisiae.	Salunke BK, Sawant SS, Lee SI, Kim BS	Appl Microbiol Biotechnol	10.1007/s00253-015-6559-4	2015	*
Phylogeny	A laboratory case study of efficient polyhydoxyalkonates production by Bacillus cereus, a contaminant in Saccharophagus degradans ATCC 43961 in minimal sea salt media.	Sawant SS, Salunke BK, Kim BS	Curr Microbiol	10.1007/s00284-014-0664-y	2014	*
Enzymology	Gene cloning, expression and characterisation of a new beta-agarase, AgWH50C, producing neoagarobiose from Agarivorans gilvus WH0801.	Liu N, Mao X, Yang M, Mu B, Wei D	World J Microbiol Biotechnol	10.1007/s11274-013-1591-y	2014	*
Metabolism	An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis.	Lee HJ, Kim IJ, Kim JF, Choi IG, Kim KH	Bioresour Technol	10.1016/j.biortech.2013.09.086	2013	*
Enzymology	Feasibility test of utilizing Saccharophagus degradans 2-40(T) as the source of crude enzyme for the saccharification of lignocellulose.	Jung YH, Kim HK, Song DS, Choi IG, Yang TH, Lee HJ, Seung D, Kim KH	Bioprocess Biosyst Eng	10.1007/s00449-013-1040-1	2013	*
Metabolism	Biochemical characterization of 4-alpha-glucanotransferase from Saccharophagus degradans 2-40 and its potential role in glycogen degradation.	Hwang S, Choi KH, Kim J, Cha J	FEMS Microbiol Lett	10.1111/1574-6968.12167	2013	*
Phylogeny	Identification and characterization of cellobiose 2-epimerases from various aerobes.	Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H	Biosci Biotechnol Biochem	10.1271/bbb.120742	2013	*
Phylogeny	Isolation of a novel Saccharophagus species (Myt-1) capable of degrading a variety of seaweeds and polysaccharides.	Sakatoku A, Wakabayashi M, Tanaka Y, Tanaka D, Nakamura S	Microbiologyopen	10.1002/mbo3.10	2012	*
Metabolism	Bacterial cadherin domains as carbohydrate binding modules: determination of affinity constants to insoluble complex polysaccharides.	Fraiberg M, Borovok I, Weiner RM, Lamed R, Bayer EA	Methods Mol Biol	10.1007/978-1-61779-956-3_11	2012	*
Enzymology	Cloning of agarase gene from non-marine agarolytic bacterium Cellvibrio sp.	Ariga O, Inoue T, Kubo H, Minami K, Nakamura M, Iwai M, Moriyama H, Yanagisawa M, Nakasaki K	J Microbiol Biotechnol	10.4014/jmb.1202.02020	2012	*
Enzymology	Agar degradation by microorganisms and agar-degrading enzymes.	Chi WJ, Chang YK, Hong SK	Appl Microbiol Biotechnol	10.1007/s00253-012-4023-2	2012	*
Enzymology	Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL.	Ko HJ, Park E, Song J, Yang TH, Lee HJ, Kim KH, Choi IG	Appl Environ Microbiol	10.1128/AEM.07004-11	2012	*
Enzymology	Depolymerization of alginate into a monomeric sugar acid using Alg17C, an exo-oligoalginate lyase cloned from Saccharophagus degradans 2-40.	Kim HT, Chung JH, Wang D, Lee J, Woo HC, Choi IG, Kim KH	Appl Microbiol Biotechnol	10.1007/s00253-012-3882-x	2012	*
Enzymology	Crystal structure of a key enzyme in the agarolytic pathway, alpha-neoagarobiose hydrolase from Saccharophagus degradans 2-40.	Ha SC, Lee S, Lee J, Kim HT, Ko HJ, Kim KH, Choi IG	Biochem Biophys Res Commun	10.1016/j.bbrc.2011.07.073	2011	*
Metabolism	Carbohydrase systems of Saccharophagus degradans degrading marine complex polysaccharides.	Hutcheson SW, Zhang H, Suvorov M	Mar Drugs	10.3390/md9040645	2011	*
Metabolism	Hydrolytic and phosphorolytic metabolism of cellobiose by the marine aerobic bacterium Saccharophagus degradans 2-40T.	Zhang H, Moon YH, Watson BJ, Suvorov M, Santos E, Sinnott CA, Hutcheson SW	J Ind Microbiol Biotechnol	10.1007/s10295-011-0945-4	2011	*
Metabolism	Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules.	Fraiberg M, Borovok I, Bayer EA, Weiner RM, Lamed R	J Bacteriol	10.1128/JB.00842-10	2010	*
Phylogeny	Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera.	Chen MH, Sheu SY, Arun AB, Young CC, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.024190-0	2010	*
Enzymology	CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.	Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC	Glycobiology	10.1093/glycob/cwq106	2010	*
Metabolism	Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40.	Shin MH, Lee DY, Wohlgemuth G, Choi IG, Fiehn O, Kim KH	N Biotechnol	10.1016/j.nbt.2010.02.023	2010	*
Metabolism	Crystallization and preliminary X-ray analysis of neoagarobiose hydrolase from Saccharophagus degradans 2-40.	Lee S, Lee JY, Ha SC, Jung J, Shin DH, Kim KH, Choi IG	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S174430910904603X	2009	*
Metabolism	Discovery and characterization of cadherin domains in Saccharophagus degradans 2-40.	Fraiberg M, Borovok I, Weiner RM, Lamed R	J Bacteriol	10.1128/JB.01236-09	2009	*
Metabolism	Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans.	Shin MH, Lee DY, Skogerson K, Wohlgemuth G, Choi IG, Fiehn O, Kim KH	Biotechnol Bioeng	10.1002/bit.22557	2010	*
Enzymology	Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40: an exo-type beta-agarase producing neoagarobiose.	Kim HT, Lee S, Lee D, Kim HS, Bang WG, Kim KH, Choi IG	Appl Microbiol Biotechnol	10.1007/s00253-009-2256-5	2009	*
Enzymology	Optimal production of a novel endo-acting beta-1,4-xylanase cloned from Saccharophagus degradans 2-40 into Escherichia coli BL21(DE3).	Ko JK, Jung MW, Kim KH, Choi IG	N Biotechnol	10.1016/j.nbt.2009.07.009	2009	*
Metabolism	Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.	Watson BJ, Zhang H, Longmire AG, Moon YH, Hutcheson SW	J Bacteriol	10.1128/JB.00481-09	2009	*
Metabolism	The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).	Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL	PLoS One	10.1371/journal.pone.0006085	2009	*
Genetics	Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.	DeBoy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B, Gilbert HJ, Nelson KE	J Bacteriol	10.1128/JB.01701-07	2008	*
Genetics	Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.	Weiner RM, Taylor LE 2nd, Henrissat B, Hauser L, Land M, Coutinho PM, Rancurel C, Saunders EH, Longmire AG, Zhang H, Bayer EA, Gilbert HJ, Larimer F, Zhulin IB, Ekborg NA, Lamed R, Richardson PM, Borovok I, Hutcheson S	PLoS Genet	10.1371/journal.pgen.1000087	2008	*
Metabolism	Utilization of cellulosic waste from tequila bagasse and production of polyhydroxyalkanoate (PHA) bioplastics by Saccharophagus degradans.	Alva Munoz LE, Riley MR	Biotechnol Bioeng	10.1002/bit.21854	2008	*
Metabolism	Biosynthesis and characterization of polyhydroxyalkanoates in the polysaccharide-degrading marine bacterium Saccharophagus degradans ATCC 43961.	Gonzalez-Garcia Y, Nungaray J, Cordova J, Gonzalez-Reynoso O, Koller M, Atlic A, Braunegg G	J Ind Microbiol Biotechnol	10.1007/s10295-007-0299-0	2008	*
Metabolism	Complete cellulase system in the marine bacterium Saccharophagus degradans strain 2-40T.	Taylor LE 2nd, Henrissat B, Coutinho PM, Ekborg NA, Hutcheson SW, Weiner RM	J Bacteriol	10.1128/JB.01348-05	2006	*
Genetics	Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans 2-40.	Ekborg NA, Taylor LE, Longmire AG, Henrissat B, Weiner RM, Hutcheson SW	Appl Environ Microbiol	10.1128/AEM.72.5.3396-3405.2006	2006	*
Phylogeny	Saccharophagus degradans gen. nov., sp. nov., a versatile marine degrader of complex polysaccharides.	Ekborg NA, Gonzalez JM, Howard MB, Taylor LE, Hutcheson SW, Weiner RM	Int J Syst Evol Microbiol	10.1099/ijs.0.63627-0	2005	*
	Carbohydrate-Binding Module and Linker Allow Cold Adaptation and Salt Tolerance of Maltopentaose-Forming Amylase From Marine Bacterium Saccharophagus degradans 2-40 (T).	Ding N, Zhao B, Ban X, Li C, Venkataram Prasad BV, Gu Z, Li Z	Front Microbiol	10.3389/fmicb.2021.708480	2021	*
	A novel beta-glucosidase from Saccharophagus degradans 2-40(T) for the efficient hydrolysis of laminarin from brown macroalgae.	Kim DH, Kim DH, Lee SH, Kim KH	Biotechnol Biofuels	10.1186/s13068-018-1059-2	2018	*

References

#6690

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17024

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23294

Nathan A. Ekborg, Jose M. Gonzalez, Michael B. Howard, Larry E. Taylor, Steven W. Hutcheson, Ronald M. Weiner: Saccharophagus degradans gen. nov., sp. nov., a versatile marine degrader of complex polysaccharides. IJSEM 55: 1545 - 1549 2005 ( DOI 10.1099/ijs.0.63627-0 , PubMed 16014479 )

#63341 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66513

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70149

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87752.1 )

* These data were automatically processed and therefore are not curated

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