Saccharophagus degradans (DSM 17024, ATCC 43961, CCUG 66513)

Name: Saccharophagus degradans (DSM 17024, ATCC 43961, CCUG 66513)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 470

Type strain

Strain Designation 2-40

Culture col. no. DSM 17024 ATCC 43961 CCUG 66513 2-40

NCBI tax ID(s) 203122 86304

Special Collections DSMZ CCUG Literature strains

History DSMZ <- R. M. Weiner <- G. Andrykovitch; 2-40. Strain shipped as an actively growing culture, but survives only 3 days in the post, making shipping outside of Europe problematic. Customers ordering from outside of Europe should inquire before ordering the strain

Links

Saccharophagus degradans 2-40 is an aerobe, heterotroph, Gram-negative bacterium that was isolated from decomposing marsh grass.

Gram-negative motile rod-shaped aerobe heterotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 87752

ATCC 43961,DSM 17024,CCUG 66513T

@ref 20215

Last LPSN update 2026-05-29 08:25:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Cellvibrionaceae

Genus Saccharophagus

Species Saccharophagus degradans

Full scientific name Saccharophagus degradans Ekborg et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23294	negative	1.5-3.0 µm	0.5 µm	rod-shaped	monotrichous, polar
23294				pleomorphic-shaped
125439	negative					97.795
125438	negative					98.5

Colony morphology

23294

Colony colorcream

Pigmentation

@ref	Production	Color	Name
23294		Black	eumelanin

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6690	HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)		Medium recipe at MediaDive	Name: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a) Composition: Agar 15.0 g/l NaCl 9.725 g/l MgCl2 2.95 g/l Bacto peptone 2.5 g/l Na2SO4 1.62 g/l CaCl2 0.9 g/l Yeast extract 0.5 g/l KCl 0.275 g/l NaHCO3 0.08 g/l Fe(III) citrate 0.05 g/l KBr 0.04 g/l SrCl2 0.017 g/l H3BO3 0.011 g/l Na2HPO4 0.004 g/l Na-silicate 0.002 g/l NaF 0.0012 g/l (NH4)NO3 0.0008 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6690	positive	growth	28
23294	positive	growth	4-37
23294	positive	optimum	30
63341	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
23294	positive	optimum	7.5
23294	positive	growth	4.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6690	aerobe
23294	aerobe
63341	aerobe
125439	obligate aerobe	94.956

Nutrition type

23294

Typeheterotroph

Spore formation

@ref	Spore formation	Confidence
125438		93.643
125439		99.621

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23294	Sea Salts (S9883)		growth	0 %
23294	Sea Salts (S9883)	positive	growth	1-10 %
23294	Sea Salts (S9883)	positive	optimum	3.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23294	2509 ChEBI	agar	+	carbon source
23294	58187 ChEBI	alginate	+	carbon source
23294	62968 ChEBI	cellulose	+	carbon source
23294	17029 ChEBI	chitin	+	carbon source
23294	5181 ChEBI	fucoidan	+	carbon source
23294	5291 ChEBI	gelatin	+	assimilation
23294	6364 ChEBI	laminarin	+	carbon source
23294	17632 ChEBI	nitrate	+	reduction
23294	17309 ChEBI	pectin	+	carbon source
23294	27941 ChEBI	pullulan	+	carbon source
23294	28017 ChEBI	starch	+	carbon source
23294	18186 ChEBI	tyrosine	+	hydrolysis
23294	37166 ChEBI	xylan	+	carbon source

Enzymes

@ref	Value	Activity	Ec
23294	catalase	+	1.11.1.6
23294	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	CMP-KDO biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	vitamin B6 metabolism	81.82	9 of 11
66794	d-xylose degradation	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	heme metabolism	78.57	11 of 14
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	acetate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	purine metabolism	72.34	68 of 94
66794	cysteine metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	nitrate assimilation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	alanine metabolism	65.52	19 of 29
66794	lysine metabolism	64.29	27 of 42
66794	non-pathway related	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	pyrimidine metabolism	57.78	26 of 45
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of pentoses	57.14	16 of 28
66794	propanol degradation	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	polyamine pathway	56.52	13 of 23
66794	degradation of sugar acids	56	14 of 25
66794	proline metabolism	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	sulfate reduction	53.85	7 of 13
66794	tryptophan metabolism	52.63	20 of 38
66794	histidine metabolism	51.72	15 of 29
66794	oxidative phosphorylation	51.65	47 of 91
66794	grixazone biosynthesis	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	tyrosine metabolism	50	7 of 14
66794	toluene degradation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	cyclohexanol degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	metabolism of disaccharids	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	ascorbate metabolism	40.91	9 of 22
66794	vitamin K metabolism	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	D-cycloserine biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	propionate fermentation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	vitamin B12 metabolism	35.29	12 of 34
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	carnitine metabolism	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)
#Environmental	#Terrestrial	#Salt marsh
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6690	decomposing marsh grass	VA, Chesapeake Bay	USA	USA	North America
23294	surface of degrading salt marsh cord grass, Spartina alterniflora
63341	Decomposing marsh grass

Taxonmaps

69479

Global distribution of 16S sequence AF055269 (>99% sequence identity) for Saccharophagus degradans subclade from Microbeatlas

Aquatic Samples	962
Soil Samples	62
Animal Samples	56
Plant Samples	22
Total Samples	1102

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6690	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1366v1 assembly for Saccharophagus degradans 2-40	complete	GCA_000013665	203122.15	637000249	203122	99.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bacterium 2-40 16S ribosomal RNA gene, partial sequence	AF063028	519		203122
6690	Saccharophagus degradans 2-40 16S ribosomal RNA gene, partial sequence	AF055269	1431		203122

GC content

@ref	GC-content (mol%)	Method
23294	45.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1366v1 assembly for Saccharophagus degradans 2-40
BV-BRC: 203122.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.96	no
125439	gram_stain	BacteriaNetⓘ	negative	97.80	no
125439	motility	BacteriaNetⓘ	yes	71.91	no
125439	spore_formation	BacteriaNetⓘ	no	99.62	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharophagus degradans 2-40 2-40
NCBI: GCA_000013665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	94.58	no
125438	aerobic	aerobicⓘ	yes	77.25	yes
125438	spore-forming	spore-formingⓘ	no	93.64	no
125438	thermophilic	thermophileⓘ	no	94.40	yes
125438	flagellated	motile2+ⓘ	yes	79.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.	Matsuyama BY, Krasteva PV, Baraquet C, Harwood CS, Sondermann H, Navarro MV.	Proc Natl Acad Sci U S A	10.1073/pnas.1523148113	2016
Enzymology	Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae.	Brat D, Boles E, Wiedemann B.	Appl Environ Microbiol	10.1128/aem.02522-08	2009
Phylogeny	Producing and Characterizing Polyhydroxyalkanoates from Starch and Chickpea Waste Using Mixed Microbial Cultures in Solid-State Fermentation.	Grgurevic K, Bramberger D, Miloloza M, Stublic K, Ocelic Bulatovic V, Ranilovic J, Ukic S, Bolanca T, Cvetnic M, Markic M, Kucic Grgic D.	Polymers (Basel)	10.3390/polym16233407	2024
	An ultrasensitive nanofiber-based assay for enzymatic hydrolysis and deep-sea microbial degradation of cellulose.	Tsudome M, Tachioka M, Miyazaki M, Uchimura K, Tsuda M, Takaki Y, Deguchi S.	iScience	10.1016/j.isci.2022.104732	2022
Metabolism	Development of a Novel Cell Surface Attachment System to Display Multi-Protein Complex Using the Cohesin-Dockerin Binding Pair.	Ko HJ, Song H, Choi IG.	J Microbiol Biotechnol	10.4014/jmb.2105.05022	2021
Transcriptome	Complex expression of the cellulolytic transcriptome of Saccharophagus degradans.	Zhang H, Hutcheson SW.	Appl Environ Microbiol	10.1128/aem.00464-11	2011
Metabolism	Common biosynthetic origins for polycyclic tetramate macrolactams from phylogenetically diverse bacteria.	Blodgett JA, Oh DC, Cao S, Currie CR, Kolter R, Clardy J.	Proc Natl Acad Sci U S A	10.1073/pnas.1001513107	2010
Metabolism	IrrE, a global regulator of extreme radiation resistance in Deinococcus radiodurans, enhances salt tolerance in Escherichia coli and Brassica napus.	Pan J, Wang J, Zhou Z, Yan Y, Zhang W, Lu W, Ping S, Dai Q, Yuan M, Feng B, Hou X, Zhang Y, Ma R, Liu T, Feng L, Wang L, Chen M, Lin M.	PLoS One	10.1371/journal.pone.0004422	2009
Metabolism	Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability.	Xiao N, Jiao N.	Appl Environ Microbiol	10.1128/aem.05955-11	2011
	Carbohydrate-Binding Module and Linker Allow Cold Adaptation and Salt Tolerance of Maltopentaose-Forming Amylase From Marine Bacterium Saccharophagus degradans 2-40 (T).	Ding N, Zhao B, Ban X, Li C, Venkataram Prasad BV, Gu Z, Li Z	Front Microbiol	10.3389/fmicb.2021.708480	2021
Metabolism	Enhanced glycolic acid yield through xylose and cellobiose utilization by metabolically engineered Escherichia coli.	Cabulong RB, Banares AB, Nisola GM, Lee WK, Chung WJ	Bioprocess Biosyst Eng	10.1007/s00449-020-02502-6	2021
Enzymology	Specific hydrolysis of curdlan with a novel glycoside hydrolase family 128 beta-1,3-endoglucanase containing a carbohydrate-binding module.	Jia X, Wang C, Du X, Peng H, Liu L, Xiao Y, He C	Carbohydr Polym	10.1016/j.carbpol.2020.117276	2020
Metabolism	Molecular Cloning and Characterization of a Novel Cold-Adapted Alkaline 1,3-alpha-3,6-Anhydro-L-galactosidase, Ahg558, from Gayadomonas joobiniege G7.	Asghar S, Lee CR, Chi WJ, Kang DK, Hong SK	Appl Biochem Biotechnol	10.1007/s12010-019-02963-w	2019
Enzymology	Identification and biochemical characterization of a novel cold-adapted 1,3-alpha-3,6-anhydro-L-galactosidase, Ahg786, from Gayadomonas joobiniege G7.	Asghar S, Lee CR, Park JS, Chi WJ, Kang DK, Hong SK	Appl Microbiol Biotechnol	10.1007/s00253-018-9277-x	2018
Biotechnology	Model-Based Complete Enzymatic Production of 3,6-Anhydro-l-galactose from Red Algal Biomass.	Pathiraja D, Lee S, Choi IG	J Agric Food Chem	10.1021/acs.jafc.8b01792	2018
	A novel beta-glucosidase from Saccharophagus degradans 2-40(T) for the efficient hydrolysis of laminarin from brown macroalgae.	Kim DH, Kim DH, Lee SH, Kim KH	Biotechnol Biofuels	10.1186/s13068-018-1059-2	2018
Metabolism	Consolidated bioprocessing for production of polyhydroxyalkanotes from red algae Gelidium amansii.	Sawant SS, Salunke BK, Kim BS	Int J Biol Macromol	10.1016/j.ijbiomac.2017.11.084	2017
Metabolism	Identification of 2-keto-3-deoxy-d-Gluconate Kinase and 2-keto-3-deoxy-d-Phosphogluconate Aldolase in an Alginate-Assimilating Bacterium, Flavobacterium sp. Strain UMI-01.	Nishiyama R, Inoue A, Ojima T	Mar Drugs	10.3390/md15020037	2017
Enzymology	Enzymatic liquefaction of agarose above the sol-gel transition temperature using a thermostable endo-type beta-agarase, Aga16B.	Kim JH, Yun EJ, Seo N, Yu S, Kim DH, Cho KM, An HJ, Kim JH, Choi IG, Kim KH	Appl Microbiol Biotechnol	10.1007/s00253-016-7831-y	2016
Enzymology	The first bacterial beta-1,6-endoglucanase from Saccharophagus degradans 2-40(T) for the hydrolysis of pustulan and laminarin.	Wang D, Kim DH, Yun EJ, Park YC, Seo JH, Kim KH	Appl Microbiol Biotechnol	10.1007/s00253-016-7753-8	2016
Metabolism	A Novel Glycoside Hydrolase Family 5 beta-1,3-1,6-Endoglucanase from Saccharophagus degradans 2-40T and Its Transglycosylase Activity.	Wang D, Kim DH, Seo N, Yun EJ, An HJ, Kim JH, Kim KH	Appl Environ Microbiol	10.1128/AEM.00635-16	2016
Enzymology	Biochemical and Structural Characterization of a Five-domain GH115 alpha-Glucuronidase from the Marine Bacterium Saccharophagus degradans 2-40T.	Wang W, Yan R, Nocek BP, Vuong TV, Di Leo R, Xu X, Cui H, Gatenholm P, Toriz G, Tenkanen M, Savchenko A, Master ER	J Biol Chem	10.1074/jbc.M115.702944	2016
Enzymology	Characterization of the biochemical properties of recombinant Xyn10C from a marine bacterium, Saccharophagus degradans 2-40.	Ko JK, Ko H, Kim KH, Choi IG	Bioprocess Biosyst Eng	10.1007/s00449-016-1548-2	2016
Metabolism	Putative Alginate Assimilation Process of the Marine Bacterium Saccharophagus degradans 2-40 Based on Quantitative Proteomic Analysis.	Takagi T, Morisaka H, Aburaya S, Tatsukami Y, Kuroda K, Ueda M	Mar Biotechnol (NY)	10.1007/s10126-015-9667-3	2015
Metabolism	A rapid, sensitive, simple plate assay for detection of microbial alginate lyase activity.	Sawant SS, Salunke BK, Kim BS	Enzyme Microb Technol	10.1016/j.enzmictec.2015.05.003	2015
Metabolism	Comparative study of MnO2 nanoparticle synthesis by marine bacterium Saccharophagus degradans and yeast Saccharomyces cerevisiae.	Salunke BK, Sawant SS, Lee SI, Kim BS	Appl Microbiol Biotechnol	10.1007/s00253-015-6559-4	2015
Phylogeny	A laboratory case study of efficient polyhydoxyalkonates production by Bacillus cereus, a contaminant in Saccharophagus degradans ATCC 43961 in minimal sea salt media.	Sawant SS, Salunke BK, Kim BS	Curr Microbiol	10.1007/s00284-014-0664-y	2014
Enzymology	Gene cloning, expression and characterisation of a new beta-agarase, AgWH50C, producing neoagarobiose from Agarivorans gilvus WH0801.	Liu N, Mao X, Yang M, Mu B, Wei D	World J Microbiol Biotechnol	10.1007/s11274-013-1591-y	2014
Metabolism	An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis.	Lee HJ, Kim IJ, Kim JF, Choi IG, Kim KH	Bioresour Technol	10.1016/j.biortech.2013.09.086	2013
Enzymology	Feasibility test of utilizing Saccharophagus degradans 2-40(T) as the source of crude enzyme for the saccharification of lignocellulose.	Jung YH, Kim HK, Song DS, Choi IG, Yang TH, Lee HJ, Seung D, Kim KH	Bioprocess Biosyst Eng	10.1007/s00449-013-1040-1	2013
Metabolism	Biochemical characterization of 4-alpha-glucanotransferase from Saccharophagus degradans 2-40 and its potential role in glycogen degradation.	Hwang S, Choi KH, Kim J, Cha J	FEMS Microbiol Lett	10.1111/1574-6968.12167	2013
Phylogeny	Identification and characterization of cellobiose 2-epimerases from various aerobes.	Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H	Biosci Biotechnol Biochem	10.1271/bbb.120742	2013
Phylogeny	Isolation of a novel Saccharophagus species (Myt-1) capable of degrading a variety of seaweeds and polysaccharides.	Sakatoku A, Wakabayashi M, Tanaka Y, Tanaka D, Nakamura S	Microbiologyopen	10.1002/mbo3.10	2012
Metabolism	Bacterial cadherin domains as carbohydrate binding modules: determination of affinity constants to insoluble complex polysaccharides.	Fraiberg M, Borovok I, Weiner RM, Lamed R, Bayer EA	Methods Mol Biol	10.1007/978-1-61779-956-3_11	2012
Enzymology	Cloning of agarase gene from non-marine agarolytic bacterium Cellvibrio sp.	Ariga O, Inoue T, Kubo H, Minami K, Nakamura M, Iwai M, Moriyama H, Yanagisawa M, Nakasaki K	J Microbiol Biotechnol	10.4014/jmb.1202.02020	2012
Enzymology	Agar degradation by microorganisms and agar-degrading enzymes.	Chi WJ, Chang YK, Hong SK	Appl Microbiol Biotechnol	10.1007/s00253-012-4023-2	2012
Enzymology	Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL.	Ko HJ, Park E, Song J, Yang TH, Lee HJ, Kim KH, Choi IG	Appl Environ Microbiol	10.1128/AEM.07004-11	2012
Enzymology	Depolymerization of alginate into a monomeric sugar acid using Alg17C, an exo-oligoalginate lyase cloned from Saccharophagus degradans 2-40.	Kim HT, Chung JH, Wang D, Lee J, Woo HC, Choi IG, Kim KH	Appl Microbiol Biotechnol	10.1007/s00253-012-3882-x	2012
Enzymology	Crystal structure of a key enzyme in the agarolytic pathway, alpha-neoagarobiose hydrolase from Saccharophagus degradans 2-40.	Ha SC, Lee S, Lee J, Kim HT, Ko HJ, Kim KH, Choi IG	Biochem Biophys Res Commun	10.1016/j.bbrc.2011.07.073	2011
Metabolism	Carbohydrase systems of Saccharophagus degradans degrading marine complex polysaccharides.	Hutcheson SW, Zhang H, Suvorov M	Mar Drugs	10.3390/md9040645	2011
Metabolism	Hydrolytic and phosphorolytic metabolism of cellobiose by the marine aerobic bacterium Saccharophagus degradans 2-40T.	Zhang H, Moon YH, Watson BJ, Suvorov M, Santos E, Sinnott CA, Hutcheson SW	J Ind Microbiol Biotechnol	10.1007/s10295-011-0945-4	2011
Metabolism	Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules.	Fraiberg M, Borovok I, Bayer EA, Weiner RM, Lamed R	J Bacteriol	10.1128/JB.00842-10	2010
Enzymology	CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.	Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC	Glycobiology	10.1093/glycob/cwq106	2010
Metabolism	Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40.	Shin MH, Lee DY, Wohlgemuth G, Choi IG, Fiehn O, Kim KH	N Biotechnol	10.1016/j.nbt.2010.02.023	2010
Metabolism	Crystallization and preliminary X-ray analysis of neoagarobiose hydrolase from Saccharophagus degradans 2-40.	Lee S, Lee JY, Ha SC, Jung J, Shin DH, Kim KH, Choi IG	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S174430910904603X	2009
Metabolism	Discovery and characterization of cadherin domains in Saccharophagus degradans 2-40.	Fraiberg M, Borovok I, Weiner RM, Lamed R	J Bacteriol	10.1128/JB.01236-09	2009
Metabolism	Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans.	Shin MH, Lee DY, Skogerson K, Wohlgemuth G, Choi IG, Fiehn O, Kim KH	Biotechnol Bioeng	10.1002/bit.22557	2010
Enzymology	Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40: an exo-type beta-agarase producing neoagarobiose.	Kim HT, Lee S, Lee D, Kim HS, Bang WG, Kim KH, Choi IG	Appl Microbiol Biotechnol	10.1007/s00253-009-2256-5	2009
Enzymology	Optimal production of a novel endo-acting beta-1,4-xylanase cloned from Saccharophagus degradans 2-40 into Escherichia coli BL21(DE3).	Ko JK, Jung MW, Kim KH, Choi IG	N Biotechnol	10.1016/j.nbt.2009.07.009	2009
Metabolism	Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.	Watson BJ, Zhang H, Longmire AG, Moon YH, Hutcheson SW	J Bacteriol	10.1128/JB.00481-09	2009
Metabolism	The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).	Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL	PLoS One	10.1371/journal.pone.0006085	2009
Genetics	Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.	DeBoy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B, Gilbert HJ, Nelson KE	J Bacteriol	10.1128/JB.01701-07	2008
Genetics	Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.	Weiner RM, Taylor LE 2nd, Henrissat B, Hauser L, Land M, Coutinho PM, Rancurel C, Saunders EH, Longmire AG, Zhang H, Bayer EA, Gilbert HJ, Larimer F, Zhulin IB, Ekborg NA, Lamed R, Richardson PM, Borovok I, Hutcheson S	PLoS Genet	10.1371/journal.pgen.1000087	2008
Metabolism	Utilization of cellulosic waste from tequila bagasse and production of polyhydroxyalkanoate (PHA) bioplastics by Saccharophagus degradans.	Alva Munoz LE, Riley MR	Biotechnol Bioeng	10.1002/bit.21854	2008
Metabolism	Biosynthesis and characterization of polyhydroxyalkanoates in the polysaccharide-degrading marine bacterium Saccharophagus degradans ATCC 43961.	Gonzalez-Garcia Y, Nungaray J, Cordova J, Gonzalez-Reynoso O, Koller M, Atlic A, Braunegg G	J Ind Microbiol Biotechnol	10.1007/s10295-007-0299-0	2008
Metabolism	Complete cellulase system in the marine bacterium Saccharophagus degradans strain 2-40T.	Taylor LE 2nd, Henrissat B, Coutinho PM, Ekborg NA, Hutcheson SW, Weiner RM	J Bacteriol	10.1128/JB.01348-05	2006
Genetics	Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans 2-40.	Ekborg NA, Taylor LE, Longmire AG, Henrissat B, Weiner RM, Hutcheson SW	Appl Environ Microbiol	10.1128/AEM.72.5.3396-3405.2006	2006
Phylogeny	Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae.	Lucena T, Arahal DR, Sanz-Saez I, Acinas SG, Sanchez O, Aznar R, Pedros-Alio C, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003906	2020
Phylogeny	Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera.	Chen MH, Sheu SY, Arun AB, Young CC, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.024190-0	2010
Phylogeny	Saccharophagus degradans gen. nov., sp. nov., a versatile marine degrader of complex polysaccharides.	Ekborg NA, Gonzalez JM, Howard MB, Taylor LE, Hutcheson SW, Weiner RM	Int J Syst Evol Microbiol	10.1099/ijs.0.63627-0	2005

References

#6690	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17024
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23294	Nathan A. Ekborg, Jose M. Gonzalez, Michael B. Howard, Larry E. Taylor, Steven W. Hutcheson, Ronald M. Weiner: Saccharophagus degradans gen. nov., sp. nov., a versatile marine degrader of complex polysaccharides. IJSEM 55: 1545 - 1549 2005 ( DOI 10.1099/ijs.0.63627-0 , PubMed 16014479 )
#63341	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66513
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharophagus degradans (DSM 17024, ATCC 43961, CCUG 66513)

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