Name: Microbulbifer taiwanensis CC-LN1-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 469

Type strain:

Species: Microbulbifer taiwanensis

Strain Designation: CC-LN1-12

Culture col. no.: DSM 24146, CCM 7856, LMG 26125

Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-LN1-12 <- A. B. Arun

NCBI tax ID(s): 986746 (species)

SI-ID 402159

DSM 24146

Other strains from Microbulbifer taiwanensis

M. taiwanensis CCUG 60466

Section

Microbulbifer taiwanensis CC-LN1-12 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from coastal soil.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Microbulbiferaceae*
	Genus	*Microbulbifer*
	Species	**Microbulbifer taiwanensis**
	Full Scientific Name (LPSN)	Microbulbifer taiwanensis Kämpfer et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30369]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #30369]	Cell width	2.75 µm

[Ref.: #30369]	Cell shape	rod-shaped

[Ref.: #30369]	Motility	no

[Ref.: #17512]

Incubation period

1-2 days

[Ref.: #30369]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17512]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17512]

Culture medium growth

[Ref.: #17512]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17512]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17512]			growth	28 °C
[Ref.: #30369]			optimum	28 °C

[Ref.: #17512]	Temperature range	mesophilic
[Ref.: #30369]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30369]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.984

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30369]		NaCl		growth	<7	%
[Ref.: #30369]		NaCl		optimum	3.5	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30369]		esculin ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30369]		catalase	+	1.11.1.6
[Ref.: #30369]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17512]	Sample type/isolated from	coastal soil
[Ref.: #17512]	Geographic location (country and/or sea, region)	Lutao Island (Green Island; 22° 39' N 121° 29' E)
[Ref.: #17512]	Country	Taiwan
[Ref.: #17512]	Country ISO 3 Code	TWN
[Ref.: #17512]	Continent	Asia
[Ref.: #17512]	Geographic location	22.6500°/121.4830°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR822983 (>99% sequence identity) for Microbulbifer taiwanensis from Microbeatlas

Aquatic Samples	134
Soil Samples	130
Animal Samples	11
Plant Samples	5
Total Samples	280

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17512]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17512]	Microbulbifer taiwanensis partial 16S rRNA gene, type strain CC-LN1-12T	FR822983	1509	ENA	986746 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbulbifer taiwanensis LMG 26125	GCA_014904815	contig	GenBank	986746 tax ID	*
[Ref.: #66792]	Microbulbifer taiwanensis strain LMG 26125	986746.3	wgs	PATRIC	986746 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbulbifer taiwanensis strain LMG 26125 PATRIC: 986746.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbulbifer taiwanensis strain LMG 26125 PATRIC: 986746.3
[Ref.: #69480]	motile	no	84.409	yes
[Ref.: #69480]	flagellated	no	92.226	yes
[Ref.: #69480]	gram-positive	no	98.236	no
[Ref.: #69480]	anaerobic	no	99.497	no
[Ref.: #69480]	halophile	yes	64.845	no
[Ref.: #69480]	spore-forming	no	95.605	yes
[Ref.: #69480]	thermophile	no	98.231	yes
[Ref.: #69480]	glucose-util	yes	92.382	no
[Ref.: #69480]	aerobic	yes	93.154	no
[Ref.: #69480]	glucose-ferment	no	88.761	no

Availability in culture collections External links

[Ref.: #17512]

Culture collection no.

DSM 24146, CCM 7856, LMG 26125

[Ref.: #70148]

SI-ID 402159

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbulbifer hainanensis sp. nov., a moderately halopilic bacterium isolated from mangrove sediment.	Cheng Y, Zhu S, Guo C, Xie F, Jung D, Li S, Zhang W, He S	Antonie Van Leeuwenhoek	10.1007/s10482-021-01574-y	2021	*
Phylogeny	Microbulbifer harenosus sp. nov., an alginate-degrading bacterium isolated from coastal sand.	Huang H, Mo K, Hu Y, Liu M, Zhu J, Zou X, Bao S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003945	2020	*
Phylogeny	Microbulbifer rhizosphaerae sp. nov., isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum.	Camacho M, Del Carmen Montero-Calasanz M, Redondo-Gomez S, Rodriguez-Llorente I, Schumann P, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000955	2016	*
Phylogeny	Microbulbifer taiwanensis sp. nov., isolated from coastal soil.	Kampfer P, Arun AB, Young CC, Rekha PD, Martin K, Busse HJ, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.034512-0	2011	*

References

#17512

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24146

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30369

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26709 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70148

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402159.1 )

#26709

IJSEM 2485 2012 ( DOI 10.1099/ijs.0.034512-0 , PubMed 22155758 )

* These data were automatically processed and therefore are not curated

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Microbulbifer taiwanensis strain LMG 26125

Microbulbifer taiwanensis strain LMG 26125

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