Komagataeibacter kakiaceti (DSM 24098, JCM 25156, LMG 26206)

Name: Komagataeibacter kakiaceti (DSM 24098, JCM 25156, LMG 26206)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 45

Type strain

Strain Designation G5-1

Culture col. no. DSM 24098 JCM 25156 LMG 26206 NRIC 0798 G5-1 1 more

NCBI tax ID(s) 1234672 943261

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM; G5-1 <- R. Suzuki, Tokyo University of Agriculture, Dept. of Applied Biology and Chemistry JCM <-- TUA 1087B <-- T. Uchimura G5-1.

Links

Komagataeibacter kakiaceti G5-1 is an aerobe, Gram-negative bacterium that was isolated from kaki vinegar.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 374753

LMG 26206,JCM 25156

@ref 20215

Last LPSN update 2026-05-29 08:24:56

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Komagataeibacter

Species Komagataeibacter kakiaceti

Full scientific name Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014

Synonyms (1)

Gluconacetobacter kakiaceti

BacDive ID	Other strains from **Komagataeibacter kakiaceti** (1)	Type strain
163335	K. kakiaceti JCM 25160

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Confidence
30251	negative	2 µm	1.2 µm
125438	negative			96.333
125439	negative			99.282

Colony morphology

17491

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17491	TUA ACETOBACTER MEDIUM (DSMZ Medium 1363)		Medium recipe at MediaDive	Name: TUA ACETOBACTER MEDIUM (DSMZ Medium 1363) Composition: Agar 15.0 g/l Bacto peptone 10.0 g/l Glycerol 10.0 g/l D-Glucose 10.0 g/l Yeast extract 5.0 g/l Ethanol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17491	positive	growth	28
30251	positive	growth	15-30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30251	positive	growth	3.5-8	acidophile

Physiology and metabolism

Oxygen tolerance

30251

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
30251
125439		99.578

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30251	22599 ChEBI	arabinose	+	carbon source
30251	28885 ChEBI	butanol	+	carbon source
30251	16236 ChEBI	ethanol	+	carbon source
30251	28260 ChEBI	galactose	+	carbon source
30251	17234 ChEBI	glucose	+	carbon source
30251	37684 ChEBI	mannose	+	carbon source
30251	16634 ChEBI	raffinose	+	carbon source
30251	33942 ChEBI	ribose	+	carbon source
30251	17992 ChEBI	sucrose	+	carbon source
30251	27082 ChEBI	trehalose	+	carbon source
30251	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30251	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	-
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17491	kaki vinegar	Kumamoto Prefecture	Japan	JPN	Asia
67770	Kaki vinegar in Kumamoto Pref.		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB607833 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Gluconacetobacter kakiaceti DSM 24098	complete			2828350867	943261	92.02
66792	Komagataeibacter kakiaceti strain DSM 24098	contig		943261.6		943261	67.47
67770	ASM61330v1 assembly for Komagataeibacter kakiaceti JCM 25156	contig	GCA_000613305	1234672.4	2579778616	1234672	0
66792	Komagataeibacter kakiaceti JCM 25156	contig		1234672.3		1234672	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17491	Gluconacetobacter kakiaceti gene for 16S ribosomal RNA, partial sequence, strain: G5-1	AB607833	1444		1234672
124043	Komagataeibacter kakiaceti JCM 25156 strain LMG 26206 16S-23S ribosomal RNA intergenic spacer, partial sequence.	MT620964	726		1234672

GC content

@ref	GC-content (mol%)	Method
17491	63.6	high performance liquid chromatography (HPLC)
30251	63.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Komagataeibacter kakiaceti strain DSM 24098
BV-BRC: 943261.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.26	no
125439	gram_stain	BacteriaNetⓘ	negative	99.28	no
125439	motility	BacteriaNetⓘ	yes	72.70	no
125439	spore_formation	BacteriaNetⓘ	no	99.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Komagataeibacter kakiaceti JCM 25156
PATRIC: 1234672.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.33	yes
125438	anaerobic	anaerobicⓘ	no	86.68	yes
125438	spore-forming	spore-formingⓘ	no	89.34	no
125438	aerobic	aerobicⓘ	yes	77.59	yes
125438	thermophilic	thermophileⓘ	no	97.20	no
125438	flagellated	motile2+ⓘ	yes	67.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Fermentation Characteristics of Unripe Citrus unshiu Vinegar Production Using Acetic Acid Bacteria Isolated from Traditional Fermented Vinegars.	Won SH, Kim YJ, Choi KT, Choi JS, Park HD, Lee SB.	Prev Nutr Food Sci	10.3746/pnf.2024.29.2.220	2024
Metabolism	Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions.	Romling U, Galperin MY.	Trends Microbiol	10.1016/j.tim.2015.05.005	2015
Genetics	Customized 16S-23S rDNA ITS Amplicon Metagenomics for Acetic Acid Bacteria Species Identification in Vinegars and Kombuchas.	Ribic A, Trcek J.	Microorganisms	10.3390/microorganisms12051023	2024
Phylogeny	Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov.	Yamada Y	Int J Syst Evol Microbiol	10.1099/ijs.0.054494-0	2014
	Isolation and Characterization of Komagataeibacter piraceti sp. nov. and Novacetimonas labruscae sp. nov.: Two Novel Microaerobic Cellulose-Producing Acetic Acid Bacteria from Vinegars.	Karnicnik B, Accetto T, Fanedl L, Jugovic I, Trcek J.	Microorganisms	10.3390/microorganisms13020456	2025
Phylogeny	Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar.	Maric L, Cleenwerck I, Accetto T, Vandamme P, Trcek J	Microorganisms	10.3390/microorganisms8081178	2020
Phylogeny	Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar.	Iino T, Suzuki R, Tanaka N, Kosako Y, Ohkuma M, Komagata K, Uchimura T	Int J Syst Evol Microbiol	10.1099/ijs.0.031773-0	2011

References

#17491	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24098
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26593	IJSEM 1465 2012 ( DOI 10.1099/ijs.0.031773-0 , PubMed 21841006 )
#30251	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26593
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Komagataeibacter kakiaceti (DSM 24098, JCM 25156, LMG 26206)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000613305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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