Name: Komagataeibacter kakiaceti G5-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 45

Type strain:

Species: Komagataeibacter kakiaceti

Strain Designation: G5-1

Culture col. no.: DSM 24098, JCM 25156, LMG 26206, NRIC 0798, BCRC 80743

Strain history: TUA 1087B <-- T. Uchimura G5-1.

NCBI tax ID(s): 1234672 (strain), 943261 (species)

SI-ID 374753

LMG 26206, JCM 25156

Other strains from Komagataeibacter kakiaceti

K. kakiaceti JCM 25160

Section

Komagataeibacter kakiaceti G5-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from kaki vinegar.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter kakiaceti**
	Full Scientific Name (LPSN)	Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014

Synonym

Gluconacetobacter kakiaceti

Information on morphological and physiological properties Morphology

[Ref.: #30251]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.899

[Ref.: #30251]	Cell length	2 µm

[Ref.: #30251]	Cell width	1.2 µm

[Ref.: #30251]	Motility	no

[Ref.: #17491]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17491]

Culture medium

TUA ACETOBACTER MEDIUM (DSMZ Medium 1363)

[Ref.: #17491]

Culture medium growth

[Ref.: #17491]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17491]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17491]	growth	28 °C
[Ref.: #30251]	growth	15-30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #17491]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30251]			growth	3.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30251]

Oxygen tolerance

aerobe

[Ref.: #30251]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30251]	arabinose ChEBI	+	carbon source
[Ref.: #30251]	butanol ChEBI	+	carbon source
[Ref.: #30251]	ethanol ChEBI	+	carbon source
[Ref.: #30251]	galactose ChEBI	+	carbon source
[Ref.: #30251]	glucose ChEBI	+	carbon source
[Ref.: #30251]	mannose ChEBI	+	carbon source
[Ref.: #30251]	raffinose ChEBI	+	carbon source
[Ref.: #30251]	ribose ChEBI	+	carbon source
[Ref.: #30251]	sucrose ChEBI	+	carbon source
[Ref.: #30251]	trehalose ChEBI	+	carbon source
[Ref.: #30251]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30251]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17491]	Sample type/isolated from	kaki vinegar
[Ref.: #17491]	Geographic location (country and/or sea, region)	Kumamoto Prefecture
[Ref.: #17491]	Country	Japan
[Ref.: #17491]	Country ISO 3 Code	JPN
[Ref.: #17491]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Kaki vinegar in Kumamoto Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB607833 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17491]	Gluconacetobacter kakiaceti gene for 16S ribosomal RNA, partial sequence, strain: G5-1	AB607833	1444	ENA	1234672 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Komagataeibacter kakiaceti JCM 25156	GCA_000613305	contig	GenBank	1234672 tax ID
[Ref.: #66792]	Komagataeibacter kakiaceti JCM 25156	1234672.3	wgs	PATRIC	1234672 tax ID	*
[Ref.: #66792]	Komagataeibacter kakiaceti strain DSM 24098	943261.6	wgs	PATRIC	943261 tax ID	*
[Ref.: #66792]	Komagataeibacter kakiaceti JCM 25156	2579778616	draft	JGI IMG/M	1234672 tax ID	*
[Ref.: #66792]	Gluconacetobacter kakiaceti DSM 24098	2828350867	draft	JGI IMG/M	943261 tax ID	*

[Ref.: #17491]	GC-content	63.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30251]	GC-content	63.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Komagataeibacter kakiaceti JCM 25156 PATRIC: 1234672.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter kakiaceti JCM 25156 PATRIC: 1234672.3
[Ref.: #69480]	motile	yes	74.2	yes
[Ref.: #69480]	gram-positive	no	96.86	yes
[Ref.: #69480]	anaerobic	no	97.316	yes
[Ref.: #69480]	aerobic	yes	76.253	yes
[Ref.: #69480]	halophile	no	94.802	no
[Ref.: #69480]	spore-forming	no	96.067	yes
[Ref.: #69480]	glucose-util	yes	87.511	yes
[Ref.: #69480]	flagellated	no	87.669	yes
[Ref.: #69480]	thermophile	no	94.419	yes
[Ref.: #69480]	glucose-ferment	no	85.436	no

Availability in culture collections External links

[Ref.: #17491]

Culture collection no.

DSM 24098, JCM 25156, LMG 26206, NRIC 0798, BCRC 80743

[Ref.: #69730]

SI-ID 374753

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar.	Maric L, Cleenwerck I, Accetto T, Vandamme P, Trcek J	Microorganisms	10.3390/microorganisms8081178	2020	*
Phylogeny	Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov.	Yamada Y	Int J Syst Evol Microbiol	10.1099/ijs.0.054494-0	2014	*
Phylogeny	Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar.	Iino T, Suzuki R, Tanaka N, Kosako Y, Ohkuma M, Komagata K, Uchimura T	Int J Syst Evol Microbiol	10.1099/ijs.0.031773-0	2011	*

References

#17491

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24098

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30251

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26593 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69730

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID374753.1 )

#26593

IJSEM 1465 2012 ( DOI 10.1099/ijs.0.031773-0 , PubMed 21841006 )

* These data were automatically processed and therefore are not curated

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Komagataeibacter kakiaceti JCM 25156

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