Strain identifier

BacDive ID: 45

Type strain: Yes

Species: Komagataeibacter kakiaceti

Strain Designation: G5-1

Strain history: TUA 1087B <-- T. Uchimura G5-1.

NCBI tax ID(s): 1234672 (strain), 943261 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 17491

BacDive-ID: 45

DSM-Number: 24098

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative

description: Komagataeibacter kakiaceti G5-1 is an aerobe, Gram-negative bacterium that was isolated from kaki vinegar.

NCBI tax id

NCBI tax idMatching level
1234672strain
943261species

strain history

@refhistory
17491<- JCM; G5-1 <- R. Suzuki, Tokyo University of Agriculture, Dept. of Applied Biology and Chemistry
67770TUA 1087B <-- T. Uchimura G5-1.

doi: 10.13145/bacdive45.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter kakiaceti
  • full scientific name: Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014

  • synonyms

    • @ref: 20215
    • synonym: Gluconacetobacter kakiaceti

@ref: 17491

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter kakiaceti

full scientific name: Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014

strain designation: G5-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilityconfidence
30251negative2 µm1.2 µmno
69480negative96.333

colony morphology

  • @ref: 17491
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 17491
  • name: TUA ACETOBACTER MEDIUM (DSMZ Medium 1363)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1363
  • composition: Name: TUA ACETOBACTER MEDIUM (DSMZ Medium 1363) Composition: Agar 15.0 g/l Bacto peptone 10.0 g/l Glycerol 10.0 g/l D-Glucose 10.0 g/l Yeast extract 5.0 g/l Ethanol Distilled water

culture temp

@refgrowthtypetemperature
17491positivegrowth28
30251positivegrowth15-30
67770positivegrowth30

culture pH

  • @ref: 30251
  • ability: positive
  • type: growth
  • pH: 3.5-8
  • PH range: acidophile

Physiology and metabolism

oxygen tolerance

  • @ref: 30251
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30251no
69481no100

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3025122599arabinose+carbon source
3025128885butanol+carbon source
3025116236ethanol+carbon source
3025128260galactose+carbon source
3025117234glucose+carbon source
3025137684mannose+carbon source
3025116634raffinose+carbon source
3025133942ribose+carbon source
3025117992sucrose+carbon source
3025127082trehalose+carbon source
3025118222xylose+carbon source

enzymes

  • @ref: 30251
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17491kaki vinegarKumamoto PrefectureJapanJPNAsia
67770Kaki vinegar in Kumamoto Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_79.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_79&stattab=map
  • Last taxonomy: Komagataeibacter
  • 16S sequence: AB607833
  • Sequence Identity:
  • Total samples: 4067
  • soil counts: 662
  • aquatic counts: 523
  • animal counts: 2327
  • plant counts: 555

Sequence information

16S sequences

  • @ref: 17491
  • description: Gluconacetobacter kakiaceti gene for 16S ribosomal RNA, partial sequence, strain: G5-1
  • accession: AB607833
  • length: 1444
  • database: nuccore
  • NCBI tax ID: 1234672

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Komagataeibacter kakiaceti JCM 251561234672.3wgspatric1234672
66792Komagataeibacter kakiaceti strain DSM 24098943261.6wgspatric943261
66792Komagataeibacter kakiaceti JCM 251562579778616draftimg1234672
66792Gluconacetobacter kakiaceti DSM 240982828350867draftimg943261
67770Komagataeibacter kakiaceti JCM 25156GCA_000613305contigncbi1234672

GC content

@refGC-contentmethod
1749163.6high performance liquid chromatography (HPLC)
3025163.2

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno96.333yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no86.68yes
69480spore-formingspore-formingAbility to form endo- or exosporesno89.337no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.593yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.203no
69480flagellatedmotile2+Ability to perform flagellated movementyes67.601no

External links

@ref: 17491

culture collection no.: DSM 24098, JCM 25156, LMG 26206, NRIC 0798, BCRC 80743

straininfo link

  • @ref: 69730
  • straininfo: 374753

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21841006Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar.Iino T, Suzuki R, Tanaka N, Kosako Y, Ohkuma M, Komagata K, Uchimura TInt J Syst Evol Microbiol10.1099/ijs.0.031773-02011Acetic Acid/*metabolism, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Fruit, Gluconacetobacter/*classification/genetics/*isolation & purification, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology
Phylogeny24523443Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov.Yamada YInt J Syst Evol Microbiol10.1099/ijs.0.054494-02014Acetobacteraceae/*classification/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Gluconacetobacter/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny32756518Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar.Maric L, Cleenwerck I, Accetto T, Vandamme P, Trcek JMicroorganisms10.3390/microorganisms80811782020

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17491Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24098)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24098
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30251Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2659328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69730Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID374753.1StrainInfo: A central database for resolving microbial strain identifiers