Strain identifier
BacDive ID: 45
Type strain: 
Species: Komagataeibacter kakiaceti
Strain Designation: G5-1
Strain history: TUA 1087B <-- T. Uchimura G5-1.
NCBI tax ID(s): 1234672 (strain), 943261 (species)
version 8.1 (current version)
General
@ref: 17491
BacDive-ID: 45
DSM-Number: 24098
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Komagataeibacter kakiaceti G5-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from kaki vinegar.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 943261 | species |
| 1234672 | strain |
strain history
| @ref | history |
|---|---|
| 17491 | <- JCM; G5-1 <- R. Suzuki, Tokyo University of Agriculture, Dept. of Applied Biology and Chemistry |
| 67770 | TUA 1087B <-- T. Uchimura G5-1. |
doi: 10.13145/bacdive45.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Komagataeibacter
- species: Komagataeibacter kakiaceti
- full scientific name: Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014
synonyms
- @ref: 20215
- synonym: Gluconacetobacter kakiaceti
@ref: 17491
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter kakiaceti
full scientific name: Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014
strain designation: G5-1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | motility | confidence |
|---|---|---|---|---|---|
| 30251 | negative | 2 µm | 1.2 µm | no | |
| 69480 | negative | 99.899 |
colony morphology
- @ref: 17491
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 17491
- name: TUA ACETOBACTER MEDIUM (DSMZ Medium 1363)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1363
- composition: Name: TUA ACETOBACTER MEDIUM (DSMZ Medium 1363) Composition: Agar 15.0 g/l Bacto peptone 10.0 g/l Glycerol 10.0 g/l D-Glucose 10.0 g/l Yeast extract 5.0 g/l Ethanol Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17491 | positive | growth | 28 | mesophilic |
| 30251 | positive | growth | 15-30 | |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30251
- ability: positive
- type: growth
- pH: 3.5-8
- PH range: acidophile
Physiology and metabolism
oxygen tolerance
- @ref: 30251
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 30251 | no | |
| 69481 | no | 100 |
| 69480 | no | 100 |
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30251 | 22599 | arabinose | + | carbon source |
| 30251 | 28885 | butanol | + | carbon source |
| 30251 | 16236 | ethanol | + | carbon source |
| 30251 | 28260 | galactose | + | carbon source |
| 30251 | 17234 | glucose | + | carbon source |
| 30251 | 37684 | mannose | + | carbon source |
| 30251 | 16634 | raffinose | + | carbon source |
| 30251 | 33942 | ribose | + | carbon source |
| 30251 | 17992 | sucrose | + | carbon source |
| 30251 | 27082 | trehalose | + | carbon source |
| 30251 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 30251
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 17491 | kaki vinegar | Kumamoto Prefecture | Japan | JPN | Asia |
| 67770 | Kaki vinegar in Kumamoto Pref. | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | |
| #Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_79.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_79&stattab=map
- Last taxonomy: Komagataeibacter
- 16S sequence: AB607833
- Sequence Identity:
- Total samples: 4067
- soil counts: 662
- aquatic counts: 523
- animal counts: 2327
- plant counts: 555
Sequence information
16S sequences
- @ref: 17491
- description: Gluconacetobacter kakiaceti gene for 16S ribosomal RNA, partial sequence, strain: G5-1
- accession: AB607833
- length: 1444
- database: ena
- NCBI tax ID: 1234672
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Komagataeibacter kakiaceti JCM 25156 | 1234672.3 | wgs | patric | 1234672 |
| 66792 | Komagataeibacter kakiaceti strain DSM 24098 | 943261.6 | wgs | patric | 943261 |
| 66792 | Komagataeibacter kakiaceti JCM 25156 | 2579778616 | draft | img | 1234672 |
| 66792 | Gluconacetobacter kakiaceti DSM 24098 | 2828350867 | draft | img | 943261 |
| 67770 | Komagataeibacter kakiaceti JCM 25156 | GCA_000613305 | contig | ncbi | 1234672 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 17491 | 63.6 | high performance liquid chromatography (HPLC) |
| 30251 | 63.2 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 74.2 | yes |
| gram-positive | no | 96.86 | yes |
| anaerobic | no | 97.316 | yes |
| aerobic | yes | 76.253 | yes |
| halophile | no | 94.802 | no |
| spore-forming | no | 96.067 | yes |
| glucose-util | yes | 87.511 | yes |
| flagellated | no | 87.669 | yes |
| thermophile | no | 94.419 | yes |
| glucose-ferment | no | 85.436 | no |
External links
@ref: 17491
culture collection no.: DSM 24098, JCM 25156, LMG 26206, NRIC 0798, BCRC 80743
straininfo link
- @ref: 69730
- straininfo: 374753
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21841006 | Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar. | Iino T, Suzuki R, Tanaka N, Kosako Y, Ohkuma M, Komagata K, Uchimura T | Int J Syst Evol Microbiol | 10.1099/ijs.0.031773-0 | 2011 | Acetic Acid/*metabolism, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Fruit, Gluconacetobacter/*classification/genetics/*isolation & purification, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Biotechnology |
| Phylogeny | 24523443 | Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov. | Yamada Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.054494-0 | 2014 | Acetobacteraceae/*classification/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Gluconacetobacter/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 32756518 | Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar. | Maric L, Cleenwerck I, Accetto T, Vandamme P, Trcek J | Microorganisms | 10.3390/microorganisms8081178 | 2020 |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17491 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24098) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24098 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30251 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26593 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 69730 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID374753.1 | StrainInfo: A central database for resolving microbial strain identifiers |