Erwinia pyrifoliae (DSM 12163, Ep16/96, CIP 106111)

Name: Erwinia pyrifoliae (DSM 12163, Ep16/96, CIP 106111)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4393

Type strain

Strain Designation Ep16/96, Ep 16/96

Culture col. no. DSM 12163 Ep16/96 CIP 106111 CFBP 4172 Ep 16/96

NCBI tax ID(s) 644651 79967

Special Collections DSMZ CIP

History DSMZ <- K. Geider; Ep16/96 <- S.-L. Rhim CIP <- 1999, K. Geider, Max-Planck-Institut, Ladenburg, Germany <- S.-L. Rhim: strain Ep 16/96

Links

Erwinia pyrifoliae Ep16/96 is a Gram-negative, motile, rod-shaped plant pathogen that was isolated from Pyrus pyrifolia.

Gram-negative motile rod-shaped plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49243

CIP 106111,CFBP 4172,DSM 12163,ICMP 14143,LMG 25888

@ref 20215

Last LPSN update 2026-05-29 08:25:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Erwinia

Species Erwinia pyrifoliae

Full scientific name Erwinia pyrifoliae Kim et al. 1999

BacDive ID	Other strains from **Erwinia pyrifoliae** (4)	Type strain
4392	E. pyrifoliae Ep1/96, DSM 12162
4394	E. pyrifoliae Ep8/95, DSM 12393
4395	E. pyrifoliae Ep4/97, DSM 12394
130295	E. pyrifoliae Ejp557, DSM 21237

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122091	negative	rod-shaped
125439	negative		93.874
125438	negative		98.994

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4558	REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)	Medium recipe at MediaDive	Name: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
39473	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122091	CIP Medium 3	Medium recipe at CIP
4558	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4558	positive	growth	30
4558	positive	growth	28
39473	positive	growth	25
122091	positive	growth	5-30
122091	negative	growth	37
122091	negative	growth	41

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.348
125439		96.664

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
122091	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
122091	17234 ChEBI	glucose	+	degradation
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
122091	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
122091	15792 ChEBI	malonate	-	assimilation
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
122091	29864 ChEBI	mannitol	-	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
122091	17632 ChEBI	nitrate	-	reduction
122091	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
122091	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122091	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122091	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122091	15688 ChEBI	acetoin	+
122091	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122091	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
122091	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122091	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122091	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122091	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122091	ornithine decarboxylase	-	4.1.1.17
122091	oxidase	-
122091	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
122091	tryptophan deaminase	-
122091	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122091	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122091	not determinedn.d.	+/-	-	-	+	+	-	-	-	-	+	+	+	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122091	not determinedn.d.	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Isolation date
4558	Pyrus pyrifolia	Pyrus pyrifolia	Republic of Korea	KOR	Asia
122091	Necrotic tissue of Nashi pear		Republic of Korea	KOR	Asia	1996

Taxonmaps

69479

Global distribution of 16S sequence AM980502 (>99% sequence identity) for Erwinia from Microbeatlas

Aquatic Samples	255
Soil Samples	90
Animal Samples	1537
Plant Samples	278
Total Samples	2160

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
4558		1	Risk group (German classification) According to TRBA 466
122091		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2698v1 assembly for Erwinia pyrifoliae DSM 12163	chromosome	GCA_000026985	644651.3	646862321	644651	87.38

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Erwinia pyrifoliae gene for 16S ribosomal RNA, partial sequence, strain: DSM12163	AB242880	1110	644651
20218	Erwinia pyrifoliae partial 16S rRNA gene, strain Ep16/96	AM980502	1349	79967
20218	Erwinia pyrifoliae DSM 12163 16S ribosomal RNA gene, partial sequence	FJ611857	1387	644651

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2698v1 assembly for Erwinia pyrifoliae DSM 12163
NCBI: GCA_000026985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	80.30	no
125439	gram_stain	BacteriaNetⓘ	negative	93.87	no
125439	motility	BacteriaNetⓘ	yes	66.00	no
125439	spore_formation	BacteriaNetⓘ	no	96.66	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Erwinia pyrifoliae DSM 12163
PATRIC: 644651.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	no
125438	anaerobic	anaerobicⓘ	no	99.18	no
125438	aerobic	aerobicⓘ	yes	54.67	no
125438	spore-forming	spore-formingⓘ	no	90.35	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	79.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	P450 cyptide synthase MpoB catalyzes the cross-linking of the YPW motif on the precursor peptide.	Khan AH, Haedar JR, Kiselov V, Romanuks V, Smits G, Donadio S, Phan CS.	RSC Chem Biol	10.1039/d5cb00153f	2025
Genetics	Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980).	Zhang X, Chen X, Wu X, Liu Y, Wei Y.	Sci Rep	10.1038/s41598-025-13676-y	2025
	Pear flower and leaf microbiome dynamics during the naturally occurring spread of Erwinia amylovora.	Oz A, Mairesse O, Raikin S, Hanani H, Mor H, Dafny Yelin M, Sharon I.	mSphere	10.1128/msphere.00011-25	2025
Genetics	Comparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear.	Lee GM, Ko S, Oh EJ, Song YR, Kim D, Oh CS.	Plant Pathol J	10.5423/ppj.oa.06.2020.0097	2020
	Metabolomic Insights into the Antimicrobial Effects of Metschnikowia Yeast on Phytopathogens	Perek Z, Krupa S, Niziol J, Kregiel D, Ruman T, Gutarowska B.	Molecules		2025
Genetics	Conservation of Erwinia amylovora pathogenicity-relevant genes among Erwinia genomes.	Borruso L, Salomone-Stagni M, Polsinelli I, Schmitt AO, Benini S.	Arch Microbiol	10.1007/s00203-017-1409-7	2017
Metabolism	Integrated bioprocess for the stereospecific production of linalool oxides from linalool with Corynespora cassiicola DSM 62475.	Bormann S, Etschmann MM, Mirata MA, Schrader J.	J Ind Microbiol Biotechnol	10.1007/s10295-012-1181-2	2012
	Synthesis and Biological Properties of Fluorescent Strigolactone Mimics Derived from 1,8-Naphthalimide.	Bala IA, Nicolescu A, Georgescu F, Dumitrascu F, Airinei A, Tigoianu R, Georgescu E, Constantinescu-Aruxandei D, Oancea F, Deleanu C.	Molecules	10.3390/molecules29102283	2024
Pathogenicity	Identification of novel antimicrobial resistance genes from microbiota on retail spinach.	Berman HF, Riley LW.	BMC Microbiol	10.1186/1471-2180-13-272	2013
Enzymology	New insight into the bark beetle ips typographus bacteriome reveals unexplored diversity potentially beneficial to the host.	Peral-Aranega E, Saati-Santamaria Z, Ayuso-Calles M, Kostovcik M, Veselska T, Svec K, Rivas R, Kolarik M, Garcia-Fraile P.	Environ Microbiome	10.1186/s40793-023-00510-z	2023
	Characterization and Antifungal Activity of Pullulan Edible Films Enriched with Propolis Extract for Active Packaging.	Gniewosz M, Pobiega K, Krasniewska K, Synowiec A, Chaberek M, Galus S.	Foods	10.3390/foods11152319	2022
Genetics	Novel Erwinia persicina Infecting Phage Midgardsormr38 Within the Context of Temperate Erwinia Phages.	Zrelovs N, Dislers A, Kazaks A.	Front Microbiol	10.3389/fmicb.2020.01245	2020
Genetics	Volatiles of the Apicomplexan Alga Chromera velia and Associated Bacteria.	Koteska D, Marter P, Huang S, Pradella S, Petersen J, Schulz S.	Chembiochem	10.1002/cbic.202200530	2023
Metabolism	Fungal biotransformation of (+/-)-linalool.	Mirata MA, Wust M, Mosandl A, Schrader J.	J Agric Food Chem	10.1021/jf800099h	2008
	Antimicrobial Activities of Plant Extracts against Solanum tuberosum L. Phytopathogens.	Steglinska A, Bekhter A, Wawrzyniak P, Kunicka-Styczynska A, Jastrzabek K, Fidler M, Smigielski K, Gutarowska B.	Molecules	10.3390/molecules27051579	2022
	Identification of acquired antimicrobial resistance genes.	Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV.	J Antimicrob Chemother	10.1093/jac/dks261	2012
Pathogenicity	Metabolite Formation by Fungal Pathogens of Potatoes (Solanum tuberosum L.) in the Presence of Bioprotective Agents.	Steglinska A, Sulyok M, Janas R, Grzesik M, Liszkowska W, Kregiel D, Gutarowska B.	Int J Environ Res Public Health	10.3390/ijerph20065221	2023
	Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites.	Palmer M, de Maayer P, Poulsen M, Steenkamp ET, van Zyl E, Coutinho TA, Venter SN.	Stand Genomic Sci	10.1186/s40793-016-0144-z	2016
Genetics	Comparative genomics of the Erwinia and Enterobacter olive fly endosymbionts.	Estes AM, Hearn DJ, Agrawal S, Pierson EA, Dunning Hotopp JC.	Sci Rep	10.1038/s41598-018-33809-w	2018
	Identification of functional toxin/immunity genes linked to contact-dependent growth inhibition (CDI) and rearrangement hotspot (Rhs) systems.	Poole SJ, Diner EJ, Aoki SK, Braaten BA, t'Kint de Roodenbeke C, Low DA, Hayes CS.	PLoS Genet	10.1371/journal.pgen.1002217	2011
	Pantoea alhagi, a novel endophytic bacterium with ability to improve growth and drought tolerance in wheat.	Chen C, Xin K, Liu H, Cheng J, Shen X, Wang Y, Zhang L.	Sci Rep	10.1038/srep41564	2017
Metabolism	Design of Fungal Co-Cultivation Based on Comparative Metabolomics and Bioactivity for Discovery of Marine Fungal Agrochemicals.	Oppong-Danquah E, Budnicka P, Blumel M, Tasdemir D.	Mar Drugs	10.3390/md18020073	2020
Metabolism	Genomics- and Metabolomics-Based Investigation of the Deep-Sea Sediment-Derived Yeast, Rhodotorula mucilaginosa 50-3-19/20B.	Buedenbender L, Kumar A, Blumel M, Kempken F, Tasdemir D.	Mar Drugs	10.3390/md19010014	2020
Genetics	Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from Frankliniella occidentalis.	Facey PD, Meric G, Hitchings MD, Pachebat JA, Hegarty MJ, Chen X, Morgan LV, Hoeppner JE, Whitten MM, Kirk WD, Dyson PJ, Sheppard SK, Del Sol R.	Genome Biol Evol	10.1093/gbe/evv136	2015
Enzymology	Development of an efficient real-time quantitative PCR protocol for detection of Xanthomonas arboricola pv. pruni in Prunus species.	Palacio-Bielsa A, Cubero J, Cambra MA, Collados R, Berruete IM, Lopez MM.	Appl Environ Microbiol	10.1128/aem.01593-10	2011
Metabolism	The 3-hydroxy-2-butanone pathway is required for Pectobacterium carotovorum pathogenesis.	Marquez-Villavicencio Mdel P, Weber B, Witherell RA, Willis DK, Charkowski AO.	PLoS One	10.1371/journal.pone.0022974	2011
	Genetic islands in pome fruit pathogenic and non-pathogenic Erwinia species and related plasmids.	Llop P.	Front Microbiol	10.3389/fmicb.2015.00874	2015
Metabolism	Increased Biological Activity of Aneurinibacillus migulanus Strains Correlates with the Production of New Gramicidin Secondary Metabolites.	Alenezi FN, Rekik I, Chenari Bouket A, Luptakova L, Weitz HJ, Rateb ME, Jaspars M, Woodward S, Belbahri L.	Front Microbiol	10.3389/fmicb.2017.00517	2017
	Regioselective Enzymatic beta-Carboxylation of para-Hydroxy- styrene Derivatives Catalyzed by Phenolic Acid Decarboxylases.	Wuensch C, Pavkov-Keller T, Steinkellner G, Gross J, Fuchs M, Hromic A, Lyskowski A, Fauland K, Gruber K, Glueck SM, Faber K.	Adv Synth Catal	10.1002/adsc.201401028	2015
Metabolism	Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins.	De Maayer P, Venter SN, Kamber T, Duffy B, Coutinho TA, Smits TH.	BMC Genomics	10.1186/1471-2164-12-576	2011
	An integrated approach to reconstructing genome-scale transcriptional regulatory networks.	Imam S, Noguera DR, Donohue TJ.	PLoS Comput Biol	10.1371/journal.pcbi.1004103	2015
	Functions and origin of plasmids in Erwinia species that are pathogenic to or epiphytically associated with pome fruit trees.	Llop P, Barbe S, Lopez MM.	Trees (Berl West)	10.1007/s00468-011-0630-2	2012
	TIR-only protein RBA1 recognizes a pathogen effector to regulate cell death in Arabidopsis.	Nishimura MT, Anderson RG, Cherkis KA, Law TF, Liu QL, Machius M, Nimchuk ZL, Yang L, Chung EH, El Kasmi F, Hyunh M, Osborne Nishimura E, Sondek JE, Dangl JL.	Proc Natl Acad Sci U S A	10.1073/pnas.1620973114	2017
	Unusual non-fluorescent broad spectrum siderophore activity (SID EGYII) by Pseudomonas aeruginosa strain EGYII DSM 101801 and a new insight towards simple siderophore bioassay.	Embaby AM, Heshmat Y, Hussein A.	AMB Express	10.1186/s13568-016-0192-1	2016
	Molecular Networking-Based Metabolome and Bioactivity Analyses of Marine-Adapted Fungi Co-cultivated With Phytopathogens.	Oppong-Danquah E, Parrot D, Blumel M, Labes A, Tasdemir D.	Front Microbiol	10.3389/fmicb.2018.02072	2018
Metabolism	Classification and identification of bacteria by mass spectrometry and computational analysis.	Sauer S, Freiwald A, Maier T, Kube M, Reinhardt R, Kostrzewa M, Geider K.	PLoS One	10.1371/journal.pone.0002843	2008
Metabolism	Input of protein to lake water microcosms affects expression of proteolytic enzymes and the dynamics of Pseudomonas spp.	Worm J, Nybroe O.	Appl Environ Microbiol	10.1128/aem.67.11.4955-4962.2001	2001
	Cytokine induction by lipopolysaccharide (LPS) corresponds to lethal toxicity and is inhibited by nontoxic Rhodobacter capsulatus LPS.	Loppnow H, Libby P, Freudenberg M, Krauss JH, Weckesser J, Mayer H.	Infect Immun	10.1128/iai.58.11.3743-3750.1990	1990
Phylogeny	Conventional and real-time PCRs for detection of Erwinia piriflorinigrans allow its distinction from the fire blight pathogen, Erwinia amylovora.	Barbe S, Bertolini E, Rosello M, Llop P, Lopez MM.	Appl Environ Microbiol	10.1128/aem.03626-13	2014
Genetics	Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity.	Smits TH, Jaenicke S, Rezzonico F, Kamber T, Goesmann A, Frey JE, Duffy B	BMC Genomics	10.1186/1471-2164-11-2	2010
Genetics	Erwinia wuhanensis sp. nov. isolated from human blood.	Zhang Y, Zhan Y, Yang J, Lu Z.	Front Microbiol	10.3389/fmicb.2025.1675452	2025
Phylogeny	Melissospora conviva gen. nov., sp. nov., a novel actinobacterial genus isolated from beehive through cross-feeding interactions.	Tellatin D, Cornet L, Snauwaert V, Compere P, Ongena M, Quinton L, Stulanovic N, Ribeiro Monteiro S, Rigolet A, Burguet P, Van Damme P, Carro L, Rigali S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006868	2025
	Assessing hydrocarbon degradation capacity of Isoptericola peretonis sp. nov. and related species: a comparative study.	Vidal-Verdu A, Latorre-Perez A, Pascual J, Manes-Collado R, Nevot-Terraes A, Porcar M.	Front Microbiol	10.3389/fmicb.2025.1471121	2025
Phylogeny	Erwinia pyrifoliae sp. nov., a novel pathogen that affects Asian pear trees (Pyrus pyrifolia Nakai)	Kim WS, Gardan L, Rhim SL, Geider K	Int J Syst Bacteriol	10.1099/00207713-49-2-899	1999

References

#4558	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12163
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39473	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122091	Collection of Institut Pasteur ; Curators of the CIP; CIP 106111
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Erwinia pyrifoliae (DSM 12163, Ep16/96, CIP 106111)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API biotype100

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Isolation

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Genome sequences

Genome browser: GCA_000026985

16S sequences

Genome-based predictions

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