Name: Erwinia pyrifoliae Ep1/96
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4392

Type strain:

Species: Erwinia pyrifoliae

Strain Designation: Ep1/96

Culture col. no.: DSM 12162

Strain history: <- K. Geider; Ep1/96 <- S.-L. Rhim

NCBI tax ID(s): 79967 (species)

SI-ID 49242

DSM 12162

Other strains from Erwinia pyrifoliae

E. pyrifoliae Ep16/96, Ep 16/96, DSM 12163, CIP ... (type strain)
E. pyrifoliae Ep8/95, DSM 12393
E. pyrifoliae Ep4/97, DSM 12394
E. pyrifoliae Ejp557, DSM 21237

Section

Erwinia pyrifoliae Ep1/96 is a mesophilic plant pathogen that was isolated from Pyrus pyrifolia.

mesophilic
plant pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Erwinia*
	Species	**Erwinia pyrifoliae**
	Full Scientific Name (LPSN)	Erwinia pyrifoliae Kim et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4557]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #4557]

Culture medium growth

[Ref.: #4557]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4557]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4557]			growth	30 °C

[Ref.: #4557]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4557]	Sample type/isolated from	Pyrus pyrifolia
[Ref.: #4557]	Host species	Pyrus pyrifolia
[Ref.: #4557]	Country	Republic of Korea
[Ref.: #4557]	Country ISO 3 Code	KOR
[Ref.: #4557]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4557]	Pathogenicity (plant)	yes
[Ref.: #4557]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Erwinia pyrifoliae Ep1/96	646564532	complete	JGI IMG/M	634499 tax ID	*
[Ref.: #66792]	Erwinia pyrifoliae Ep1/96	634499.18	plasmid	PATRIC	634499 tax ID	*
[Ref.: #66792]	Erwinia pyrifoliae Ep1/96	634499.17	plasmid	PATRIC	634499 tax ID	*
[Ref.: #66792]	Erwinia pyrifoliae Ep1/96	634499.19	plasmid	PATRIC	634499 tax ID	*
[Ref.: #66792]	Erwinia pyrifoliae Ep1/96	634499.3	complete	PATRIC	634499 tax ID	*
[Ref.: #66792]	Erwinia pyrifoliae Ep1/96	634499.20	plasmid	PATRIC	634499 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Erwinia pyrifoliae Ep1/96 Ep1/96 NCBI: GCA_000027265.1
[Ref.: #69480]	motile	yes	90.933	no
[Ref.: #69480]	flagellated	no	60.285	no
[Ref.: #69480]	gram-positive	no	98.55	no
[Ref.: #69480]	anaerobic	no	98.296	no
[Ref.: #69480]	aerobic	no	54.084	no
[Ref.: #69480]	halophile	no	78.537	no
[Ref.: #69480]	spore-forming	no	96.179	no
[Ref.: #69480]	thermophile	no	97.803	no
[Ref.: #69480]	glucose-util	yes	96.475	no
[Ref.: #69480]	glucose-ferment	yes	86.505	no

Availability in culture collections External links

[Ref.: #4557]

Culture collection no.

DSM 12162

[Ref.: #73883]

SI-ID 49242

Literature:

	Title	Authors	Journal	DOI	Year
Metabolism	Plant Growth-Promoting Genes can Switch to be Virulence Factors via Horizontal Gene Transfer.	Stritzler M, Soto G, Ayub N	Microb Ecol	10.1007/s00248-018-1163-7	2018	*
Phylogeny	Genetic differences between blight-causing Erwinia species with differing host specificities, identified by suppression subtractive hybridization.	Triplett LR, Zhao Y, Sundin GW	Appl Environ Microbiol	10.1128/AEM.01159-06	2006	*
Phylogeny	Relatedness of chromosomal and plasmid DNAs of Erwinia pyrifoliae and Erwinia amylovora.	McGhee GC, Schnabel EL, Maxson-Stein K, Jones B, Stromberg VK, Lacy GH, Jones AL	Appl Environ Microbiol	10.1128/AEM.68.12.6182-6192.2002	2002	*
	Comparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear.	Lee GM, Ko S, Oh EJ, Song YR, Kim D, Oh CS	Plant Pathol J	10.5423/PPJ.OA.06.2020.0097	2020	*

References

#4557

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12162

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73883

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49242.1 )

* These data were automatically processed and therefore are not curated

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Erwinia pyrifoliae Ep1/96 Ep1/96

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