Dickeya dadantii (DSM 18020, LMG 25991, NCPPB 898)

Name: Dickeya dadantii (DSM 18020, LMG 25991, NCPPB 898)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4350

Type strain

Strain Designation B374

Culture col. no. DSM 18020 LMG 25991 NCPPB 898 CFBP 1269 B374 3 more

NCBI tax ID(s) 1223572 204038 1233681

Special Collections DSMZ Literature strains CIP

History DSMZ <- CFBP <- R. Dadant; B374 CIP <- 2005, NCPPB <- strain Hayward B374

Links

Dickeya dadantii B374 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Pelargonium capitatum.

Gram-negative motile rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 111271

CFBP 1269,NCPPB 898,ICMP 1544,DSM 18020,CIP 109008,LMG 25991

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Dickeya

Species Dickeya dadantii

Full scientific name Dickeya dadantii Samson et al. 2005

BacDive ID	Other strains from **Dickeya dadantii** (1)	Type strain
4348	D. dadantii 27 B1, DSM 30179, DSM 60212

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29987	negative	2 µm	0.75 µm	rod-shaped
118839	negative			rod-shaped
125438	negative				98.5

Colony morphology

118839

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7346	REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
37455	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
118839	CIP Medium 3	Medium recipe at CIP
118839	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7346	positive	growth	30
29987	positive	growth	36-39
29987	positive	optimum	37.5
37455	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29987	facultative anaerobe
118839	facultative anaerobe

Observation

29987

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
29987	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
29987	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
29987	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
29987	17716 ChEBI	lactose	+	carbon source
68368	25094 ChEBI	lysine	-	degradation	from API 20E
29987	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
29987	15792 ChEBI	malonate	+	carbon source
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
29987	29864 ChEBI	mannitol	+	carbon source
29987	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
29987	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
29987	17268 ChEBI	myo-inositol	+	carbon source
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
29987	17632 ChEBI	nitrate	+	reduction
118839	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
118839	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
29987	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
29987	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE
118839	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
29987	35581 ChEBI	indole		+
68369	35581 ChEBI	indole		+	from API 20NE
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118839	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118839	caseinase	+	3.4.21.50
118839	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118839	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118839	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
118839	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
118839	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7346	+	-	-	-	+	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118839	-	+	+	-	-	+	+	-	+	-	+	+	+	+	-	-	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7346	+	+	+	-	-	+	-	+	+	+	+	+	+	+	+	-	-	+	+	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118839	not determinedn.d.	+	-	+	+	+	+	-	-	-	+	+	+	+	-	+	-	+/-	+	-	-	-	+	-	+	+	+	+	-	+/-	+	+	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7346	Pelargonium capitatum	Pelargonium capitatum	Comoros	COM	Africa
118839	Plant, Host plant, Pelargonium capitatum

Taxonmaps

69479

Global distribution of 16S sequence AF520707 (>99% sequence identity) for Dickeya dadantii from Microbeatlas

Aquatic Samples	8
Soil Samples	2
Animal Samples	17
Plant Samples	15
Total Samples	42

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
7346		1	Risk group (German classification) According to TRBA 466
118839		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM304978v1 assembly for Dickeya dadantii DSM 18020	complete	GCA_003049785	204038.21	2814123163	204038	98.13
66792	Dickeya dadantii NCPPB 898	complete			2558860214	1223572	92.71
66792	DDA898_1.0 assembly for Dickeya dadantii NCPPB 898	chromosome	GCA_000406145	1223572.11	2962769303	1223572	74.34

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Dickeya dadantii strain NCPPB 898 16S-23S ribosomal RNA intergenic spacer, partial sequence	KC844733	320	204038
7346	Dickeya dadantii strain CFBP 1269 16S ribosomal RNA gene, partial sequence	AF520707	1413	204038
124043	Dickeya dadantii strain NCPPB 898 16S ribosomal RNA gene, partial sequence.	KY231142	1428	204038

GC content

@ref	GC-content (mol%)	Method
7346	59.5	high performance liquid chromatography (HPLC)
29987	59.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM304978v1 assembly for Dickeya dadantii DSM 18020
BV-BRC: 204038.21

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	82.86	no
125439	gram_stain	BacteriaNetⓘ	negative	76.80	no
125439	motility	BacteriaNetⓘ	yes	70.16	no
125439	spore_formation	BacteriaNetⓘ	no	83.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dickeya dadantii NCPPB 898 NCPPB 898
NCBI: GCA_000406145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	91.03	yes
125438	aerobic	aerobicⓘ	no	75.16	yes
125438	spore-forming	spore-formingⓘ	no	89.08	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	78.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequences of Seven Strains of Dickeya dadantii, a Quick Decline-Causing Pathogen in Fruit Trees, Isolated in Japan.	Fujikawa T, Hatomi H, Ota N.	Microbiol Resour Announc	10.1128/mra.00609-20	2020
	First Report of Bacterial Root Rot, Caused by Dickeya dadantii, on Sweetpotato (Ipomoea batatas) in North Carolina	Stahr MN, Butler S, Huerta AI, Ritchie DF, Quesada-Ocampo LM.	Plant Dis	10.1094/pdis-03-20-0568-pdn	2020
	Highly Targeted Detection of Priority Phytopathogen Pectobacterium brasiliense: From Obtaining Polyclonal Antibodies to Development and Approbation of Enzyme-Linked Immunoassay and Lateral Flow Immunoassay.	Safenkova IV, Galushka PA, Varitsev YA, Kamionskaya MV, Drenova NV, Vasilyeva AA, Zherdev AV, Uskov AI, Dzantiev BB.	Microorganisms	10.3390/microorganisms12122436	2024
Phylogeny	Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae.	Djurhuus AM, Carstens AB, Neve H, Kot W, Hansen LH.	Phage (New Rochelle)	10.1089/phage.2020.0039	2020
	May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot Pectobacteriaceae: Pectobacterium spp. and Dickeya spp.	Czajkowski R.	Front Microbiol	10.3389/fmicb.2019.00138	2019
	Detection of Potato Pathogen Clavibacter sepedonicus by CRISPR/Cas13a Analysis of NASBA Amplicons.	Khmeleva SA, Kurbatov LK, Ptitsyn KG, Timoshenko OS, Morozova DD, Suprun EV, Radko SP, Lisitsa AV.	Int J Mol Sci	10.3390/ijms252212218	2024
	Identification of a S-(2-succino)cysteine breakdown pathway that uses a novel S-(2-succino) lyase.	Hillmann KB, Goethel ME, Erickson NA, Niehaus TD.	J Biol Chem	10.1016/j.jbc.2022.102639	2022
	Disrupting quorum sensing as a strategy to inhibit bacterial virulence in human, animal, and plant pathogens.	Gonzales M, Kergaravat B, Jacquet P, Billot R, Grizard D, Chabriere E, Plener L, Daude D.	Pathog Dis	10.1093/femspd/ftae009	2024
	Antibacterial Activity of Oregano (Origanum vulgare L.) Essential Oil Vapors against Microbial Contaminants of Food-Contact Surfaces.	Pinto L, Cervellieri S, Netti T, Lippolis V, Baruzzi F.	Antibiotics (Basel)	10.3390/antibiotics13040371	2024
	Roles of CcDFR and CcOMT9 in the cyanidin biosynthesis and development of Cordyceps cicadae.	Zeng Z, Zou Y, Cai W, Lin FC, Wang H.	Front Microbiol	10.3389/fmicb.2024.1353710	2024
Phylogeny	Species of Dickeya and Pectobacterium Isolated during an Outbreak of Blackleg and Soft Rot of Potato in Northeastern and North Central United States.	Curland RD, Mainello A, Perry KL, Hao J, Charkowski AO, Bull CT, McNally RR, Johnson SB, Rosenzweig N, Secor GA, Larkin RP, Gugino BK, Ishimaru CA.	Microorganisms	10.3390/microorganisms9081733	2021
	Retrospective survey of Dickeya fangzhongdai using a novel validated real-time PCR assay.	Alic S, Bacnik K, Dreo T.	Front Microbiol	10.3389/fmicb.2023.1249955	2023
	A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria.	Brual T, Effantin G, Baltenneck J, Attaiech L, Grosbois C, Royer M, Cigna J, Faure D, Hugouvieux-Cotte-Pattat N, Gueguen E.	PLoS Genet	10.1371/journal.pgen.1010725	2023
	Simultaneous detection of major blackleg and soft rot bacterial pathogens in potato by multiplex polymerase chain reaction.	Potrykus M, Sledz W, Golanowska M, Slawiak M, Binek A, Motyka A, Zoledowska S, Czajkowski R, Lojkowska E.	Ann Appl Biol	10.1111/aab.12156	2014
Genetics	Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai.	Zhang J, Hu J, Shen H, Zhang Y, Sun D, Pu X, Yang Q, Fan Q, Lin B.	BMC Genomics	10.1186/s12864-018-5154-3	2018
	Construction of Specific Primers for Rapid Detection of South African Exportable Vegetable Macergens.	Aremu BR, Babalola OO.	Int J Environ Res Public Health	10.3390/ijerph121012356	2015
Enzymology	Specific detection of Pectobacterium carotovorum by loop-mediated isothermal amplification.	Yasuhara-Bell J, Marrero G, De Silva A, Alvarez AM.	Mol Plant Pathol	10.1111/mpp.12378	2016
Phylogeny	Conventional and real-time PCRs for detection of Erwinia piriflorinigrans allow its distinction from the fire blight pathogen, Erwinia amylovora.	Barbe S, Bertolini E, Rosello M, Llop P, Lopez MM.	Appl Environ Microbiol	10.1128/aem.03626-13	2014
	Development of a rapid diagnostic method for Dickeya dadantii, the bacterial canker pathogen of peach, using loop-mediated isothermal amplification.	Suzuki R, Kirino N, Nakamura R, Uchida Y, Fujikawa T.	Lett Appl Microbiol	10.1093/lambio/ovaf057	2025
Genetics	Increased pathogens and reduced intestinal immune genes associated with fish diseases during the winter-spring transition.	Yuan R, Jin X, Liu X, Hao K, Shi Y, Yang Z, Zhang L, Chen J, Guo C, Wu Y, Tang J, Zhao Z.	Int Microbiol	10.1007/s10123-025-00693-0	2025
	Acetylcholine chemotaxis in global bacterial plant pathogens.	Gavira JA, Gilabert MJ, Santamaria-Hernando S, Molina-Ollero A, Rico-Jimenez M, Cabrera JJ, Lopez-Solanilla E, Matilla MA.	Microbiol Res	10.1016/j.micres.2025.128294	2025
	Antagonistic microbes mediated modulation of systemic resistance and defense related responses against Dickeya dadantii causing bacterial stalk rot in Sorghum bicolor"	Yadav SS, Arya A, Tondon G, Singh Y.	Eur J Plant Pathol	10.1007/s10658-023-02769-x	2024
	Surviving the Potato Stems: Differences in Genes Required for Fitness by Dickeya dadantii and Dickeya dianthicola.	Gonzalez-Tobon J, Helmann T, Stodghill P, Filiatrault M.	Phytopathology	10.1094/phyto-09-23-0351-kc	2024
Enzymology	Protocol to monitor activation of a two-component system in Dickeya dadantii during chicory leaf infection using Phos-tag gel.	Madec E, Lacroix JM, Bontemps-Gallo S.	STAR Protoc	10.1016/j.xpro.2025.103999	2025
	Stress-driven temporal production of phage tail-like particles (tailocins) in Dickeya dadantii strain 3937.	Sobolewska M, Krzyzanowska DM, Borowicz M, Czajkowski R.	Sci Rep	10.1038/s41598-025-13158-1	2025
	A comparative study on chemical composition and antibacterial activity of essential oils from the aerial parts and roots of Laportea bulbifera (Siebold & Zucc.) Wedd. growing in the Central Himalayan region.	Palni M, Nitwal L, Melkani AB, Joshi D, Prasad R.	Nat Prod Res	10.1080/14786419.2023.2289187	2025
	An inner membrane protein is covalently attached to peptidoglycan in the gamma-proteobacterium Dickeya dadantii.	Nicolai X, Liang Y, Ruaudel F, Narajczyk M, Czajkowski R, Rusconi F, Arthur M, Shevchik VE.	Commun Biol	10.1038/s42003-025-08488-9	2025
	A Nitrate-Sensing Domain-Containing Chemoreceptor Is Required for Successful Entry and Virulence of Dickeya dadantii 3937 in Potato Plants.	Galvez-Roldan C, Cerna-Vargas JP, Rodriguez-Herva JJ, Krell T, Santamaria-Hernando S, Lopez-Solanilla E.	Phytopathology	10.1094/phyto-10-22-0367-r	2023
	The Atypical Pectin Methylesterase Family Member PME31 Promotes Seedling Lipid Droplet Utilization.	Hamade S, Traver MS, Bartel B.	Plant Direct	10.1002/pld3.70054	2025
	A novel transcriptional regulator, CdeR, modulates the type III secretion system via c-di-GMP signaling in Dickeya dadantii.	Ghasemi A, Yuan X, Yang C-H.	Microbiol Spectr	10.1128/spectrum.02655-24	2025
	Erwinia amylovora Type III Secretion System Inhibitors Reduce Fire Blight Infection Under Field Conditions.	Yuan X, Sundin GW, Zeng Q, Johnson KB, Cox KD, Yu M, Huang J, Yang CH.	Phytopathology	10.1094/phyto-04-23-0111-sa	2023
Pathogenicity	Emerging insights into the type I secretion system: a key player in Salmonella virulence and host-pathogen interactions.	Li S, Liu H, Qiu J.	mBio	10.1128/mbio.01655-25	2025
	Soft rot pathogen Dickeya dadantii 3937 produces tailocins resembling the tails of Peduovirus P2.	Borowicz M, Krzyzanowska DM, Narajczyk M, Sobolewska M, Rajewska M, Czaplewska P, Wegrzyn K, Czajkowski R.	Front Microbiol	10.3389/fmicb.2023.1307349	2023
Enzymology	[Mechanisms of development of side effects and drug resistance to asparaginase and ways to overcome them].	Alexandrova SS, Gladilina YA, Pokrovskaya MV, Sokolov NN, Zhdanov DD.	Biomed Khim	10.18097/pbmc20226802104	2022
Metabolism	The Role of Iron in Phytopathogenic Microbe-Plant Interactions: Insights into Virulence and Host Immune Response.	Pandey SS.	Plants (Basel)	10.3390/plants12173173	2023
	The Enhancement of Potato (Solanum Tuberosum L. Cv. Odyssey) Resistance to Bacterial Soft Rot Disease Through Transformation of the Glyphosate-Resistant Gene from Dickeya Dadanti.	Pasalari H, Roeintan A, Ercisli S, Kahrizi D, Hemmati C.	Iran J Biotechnol	10.30498/ijb.2024.461188.3934	2024
	Comparative analyses of RNA-seq and phytohormone data of sweetpotatoes inoculated with Dickeya dadantii causing bacterial stem and root rot of sweetpotato.	Xie SY, Fang B, Chen J, Zhao N, Lin S, Ma T, Huang L.	BMC Plant Biol	10.1186/s12870-024-05774-2	2024
	Essential Genes Discovery in Microorganisms by Transposon-Directed Sequencing (Tn-Seq): Experimental Approaches, Major Goals, and Future Perspectives.	Fernandez-Garcia G, Valdes-Chiara P, Villazan-Gamonal P, Alonso-Fernandez S, Manteca A.	Int J Mol Sci	10.3390/ijms252011298	2024
	Three Highly Sensitive and High-Throughput Serological Approaches for Detecting Dickeya dadantii in Sweet Potato.	He W, Huang D, Wu J, Li X, Qian Y, Li B, Lou B, Wu J.	Plant Dis	10.1094/pdis-07-20-1551-re	2021
	Synergistic Action of Biosynthesized Silver Nanoparticles and Culture Supernatant of Bacillus amyloliquefacience against the Soft Rot Pathogen Dickeya dadantii.	Hossain A, Luo J, Ali MA, Chai R, Shahid M, Ahmed T, M Hassan M, H Kadi R, An Q, Li B, Wang Y.	Plants (Basel)	10.3390/plants12091817	2023
	Complete Genome Sequence of Dickeya dadantii subsp. dieffenbachiae Strain S3-1, Isolated from a White-Flowered Calla Lily in Taiwan.	Lee YA, Chen KP.	Microbiol Resour Announc	10.1128/mra.00620-21	2021
	Reproduction of bacterial quick decline of fruit trees after soil inoculation with Dickeya dadantii	Ota N, Fujikawa T.	J Gen Plant Pathol	10.1007/s10327-020-00911-9	2020
	Secondary structure and ¹H, ¹⁵ N & ¹³C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system.	Jacobsen T, Dazzoni R, Renault MG, Bardiaux B, Nilges M, Shevchik V, Izadi-Pruneyre N, Izadi-Pruneyre N.	Biomol NMR Assign	10.1007/s12104-022-10085-4	2022
	Dissecting the molecular dance: c-di-GMP, cAMP-CRP, and VfmH collaboration in pectate lyase regulation for Dickeya dadantii-unveiling the soft rot pathogen's strategy.	Banerjee B, Yuan X, Yang C-H.	Microbiol Spectr	10.1128/spectrum.01537-23	2023
	The structure of a pectin-active family 1 polysaccharide lyase from the marine bacterium Pseudoalteromonas fuliginea.	Hobbs JK, Boraston AB.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x2400596x	2024
	Crystal Structures of Bacterial Pectin Methylesterases Pme8A and PmeC2 from Rumen Butyrivibrio.	Carbone V, Reilly K, Sang C, Schofield LR, Ronimus RS, Kelly WJ, Attwood GT, Palevich N.	Int J Mol Sci	10.3390/ijms241813738	2023
	Tailocin-Mediated Interactions Among Soft Rot Pectobacteriaceae.	Borowicz M, Krzyzanowska DM, Sobolewska M, Narajczyk M, Mruk I, Czaplewska P, Pedron J, Barny MA, Canto PY, Dziadkowiec J, Czajkowski R.	Mol Ecol	10.1111/mec.17728	2025
Enzymology	Effects of the vfm quorum-sensing system on the phenotypic features and virulence of Dickeya zeae WH1.	Tan X, Yang T, Wu M, Luo L, Zheng R, Liu Q, Zhu G, Sun Y.	Biofilm	10.1016/j.bioflm.2025.100295	2025
	Emergence of apple bacterial quick decline caused by Dickeya dadantii in Japan	Fujikawa T, Ota N, Sasaki M, Nakamura T, Iwanami T.	J Gen Plant Pathol	10.1007/s10327-019-00852-y	2019
	The phytopathogen Dickeya dadantii 3937 cpxR locus gene participates in the regulation of virulence and the global c-di-GMP network.	Jiang D, Zeng Q, Banerjee B, Lin H, Srok J, Yu M, Yang CH.	Mol Plant Pathol	10.1111/mpp.13219	2022
Lipids	Pectobacterium atrosepticum SCRI1043 flagella mediate adherence to potato plants indirectly through motility.	Holmes A, Humphris S, Marshall J, Rossez Y, Toth I, Holden NJ.	Microbiology (Reading)	10.1099/mic.0.001588	2025
	Agrobacteria deploy two classes of His-Me finger superfamily nuclease effectors exerting different antibacterial capacities against specific bacterial competitors.	Santos MNM, Pintor KL, Hsieh PY, Cheung YW, Sung LK, Shih YL, Lai EM.	Front Microbiol	10.3389/fmicb.2024.1351590	2024
	Atomistic Simulations Reveal Crucial Role of Metal Ions for Ligand Binding in Guanidine-I Riboswitch.	Franke L, Globisch C, Karakurt MC, Stephan T, Peter C.	Macromol Rapid Commun	10.1002/marc.202400606	2024
	Emergence of the Dickeya genus involved duplication of the OmpF porin and the adaptation of the EnvZ-OmpR signaling network.	Cochard C, Caby M, Gruau P, Madec E, Marceau M, Macavei I, Lemoine J, Le Danvic C, Bouchart F, Delrue B, Bontemps-Gallo S, Lacroix JM.	Microbiol Spectr	10.1128/spectrum.00833-23	2023
Genetics	Reducing costs for DNA and RNA sequencing by sample pooling using a metagenomic approach.	Teufel M, Sobetzko P.	BMC Genomics	10.1186/s12864-022-08831-y	2022
	Comparative Bioactivity Evaluation of Chemically Characterized Essential Oils Obtained from Different Aerial Parts of Eucalyptus gunnii Hook. f. (Myrtaceae).	Abbaci H, Nabti EH, Al-Bekairi AM, Hagras SAA, Salem-Bekhit MM, Adjaoud A, Alzahrani HA, Bensidhoum L, Alenazy R, Piras A, Falconieri D, Porcedda S, Benguerba Y, Houali K.	Molecules	10.3390/molecules28062638	2023
	Antimicrobial efficacy of nano-particles for crop protection and sustainable agriculture.	Jali P, Acharya S, Mahalik G.	Discov Nano	10.1186/s11671-024-04059-9	2024
	The structure of the O-polysaccharide isolated from pectinolytic gram-negative bacterium Dickeya aquatica IFB0154 is different from the O-polysaccharides of other Dickeya species.	Kowalczyk A, Szpakowska N, Sledz W, Motyka-Pomagruk A, Ossowska K, Lojkowska E, Kaczynski Z.	Carbohydr Res	10.1016/j.carres.2020.108135	2020
	Characterization of blackleg and soft rot from potato in northern Thailand	Kumvinit A, Akarapisan A.	Journal of phytopathology.	10.1111/jph.12859	2019
	Polyphenol-Functionalized Plant Viral-Derived Nanoparticles Exhibit Strong Antimicrobial and Antibiofilm Formation Activities.	Velazquez-Lam E, Imperial J, Ponz F.	ACS Appl Bio Mater	10.1021/acsabm.9b01161	2020
	Chryseochelins-structural characterization of novel citrate-based siderophores produced by plant protecting Chryseobacterium spp.	Rehm K, Vollenweider V, Gu S, Friman VP, Kummerli R, Wei Z, Bigler L.	Metallomics	10.1093/mtomcs/mfad008	2023
	Modulation of calcium, callose synthesis, membrane permeability and pectin methyl-esterase activity affect cell wall composition and embryo yield during Brassica napus microspore embryogenesis.	Calabuig-Serna A, Sancho-Oviedo D, Rivas-Sendra A, Mata-Nicolas E, Arjona-Mudarra P, Mir R, Segui-Simarro JM.	Ann Bot	10.1093/aob/mcaf054	2025
	Regulation of bacterial virulence genes by PecS family transcription factors.	Nwokocha GC, Ghosh A, Grove A.	J Bacteriol	10.1128/jb.00302-24	2024
	Function and mechanism of action of the small regulatory RNA ArcZ in Enterobacterales.	Dubois Q, Brual T, Oriol C, Mandin P, Condemine G, Gueguen E.	RNA	10.1261/rna.080010.124	2024
	First Report of Dickeya dadantii Causing Stem Rot of Poinsettia in Taiwan	Wei XY, Chiu YH, Deng WL, Chu CC.	Plant Dis	10.1094/pdis-03-18-0397-pdn	2019
	A temperature-responsive regulator that enhances virulence in the kiwifruit canker pathogen Pseudomonas syringae pv. actinidiae	He X, Zhang Y, Xu C, Fu K, Ding Y, Zhang T, Chen T, Murero A, Wang L, Xu Y, Chen C, Yang J, Li L, Zhong C, Huang L, Deng X, Shao X, Qian G.	Comput Struct Biotechnol J		2025
Genetics	Genome-Driven Analysis Reveals the Biotechnological Potential of a Novel Paenibacillus sp. Isolated From Crude Oil.	Dos Anjos Almeida JV, Nobrega Mendonca CM, Moreira LM, Pinheiro de Souza Oliveira RP, de Mello Varani A, de Medeiros Oliveira M.	Microbiologyopen	10.1002/mbo3.70159	2025
Metabolism	Identification of Three Type II Toxin-Antitoxin Systems in Model Bacterial Plant Pathogen Dickeya dadantii 3937.	Boss L, Gorniak M, Lewanczyk A, Morcinek-Orlowska J, Baranska S, Szalewska-Palasz A.	Int J Mol Sci	10.3390/ijms22115932	2021
	An uncommon [K⁺(Mg²⁺)₂] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch.	Trachman RJ, Ferre-D'Amare AR.	RNA	10.1261/rna.078824.121	2021
	Carbon source utilization regulates biofilm formation and plant-beneficial interactions of Pseudomonas ogarae F113.	Franzino T, Boubakri H, Merlin L, M'Sakni A, Droux M, Mermillod-Blondin F, Moenne-Loccoz Y, Bendahmane M, Szecsi J, Haichar FEZ.	iScience	10.1016/j.isci.2025.113639	2025
	Genome-Wide Identification of Genes Important for Growth of Dickeya dadantii and Dickeya dianthicola in Potato (Solanum tuberosum) Tubers.	Helmann TC, Filiatrault MJ, Stodghill PV.	Front Microbiol	10.3389/fmicb.2022.778927	2022
Metabolism	Carbon catabolite repression in pectin digestion by the phytopathogen Dickeya dadantii.	Martis B S, Droux M, Nasser W, Reverchon S, Meyer S.	J Biol Chem	10.1016/j.jbc.2021.101446	2022
	Elicitation strategies for the improvement of essential oil content in Rhododendron tomentosum (Ledum palustre) bioreactor-grown microshoots	Jesionek A, Kokotkiewicz A, Krolicka A, Zabiegala B, Luczkiewicz M.	Industrial crops and products.	10.1016/j.indcrop.2018.07.013	2018
Enzymology	Gene knockout of glutathione reductase results in increased sensitivity to heavy metals in Acidithiobacillus caldus.	Shi Y, Wu W, Yang Y, Liu X, Lin J, Liu X, Lin J, Pang X.	Front Microbiol	10.3389/fmicb.2023.1250330	2023
Genetics	Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria.	de Assis JCS, Goncalves OS, Fernandes AS, de Queiroz MV, Bazzolli DMS, Santana MF.	Mob DNA	10.1186/s13100-022-00275-1	2022
Pathogenicity	Lemon-Fruit-Based Green Synthesis of Zinc Oxide Nanoparticles and Titanium Dioxide Nanoparticles against Soft Rot Bacterial Pathogen Dickeya dadantii.	Hossain A, Abdallah Y, Ali MA, Masum MMI, Li B, Sun G, Meng Y, Wang Y, An Q.	Biomolecules	10.3390/biom9120863	2019
Genetics	BuscoPhylo: a webserver for Busco-based phylogenomic analysis for non-specialists.	Sahbou AE, Iraqi D, Mentag R, Khayi S.	Sci Rep	10.1038/s41598-022-22461-0	2022
	Quorum-Sensing Master Regulator VfmE Is a c-di-GMP Effector That Controls Pectate Lyase Production in the Phytopathogen Dickeya dadantii.	Banerjee B, Zeng Q, Yu M, Hsueh BY, Waters CM, Yang CH.	Microbiol Spectr	10.1128/spectrum.01805-21	2022
Metabolism	Scout-MRM: Multiplexed Targeted Mass Spectrometry-Based Assay without Retention Time Scheduling Exemplified by Dickeya dadantii Proteomic Analysis during Plant Infection.	Rougemont B, Bontemps Gallo S, Ayciriex S, Carriere R, Hondermarck H, Lacroix JM, Le Blanc JC, Lemoine J.	Anal Chem	10.1021/acs.analchem.6b03201	2017
	Identification of new Dickeya dadantii virulence factors secreted by the type 2 secretion system.	Condemine G, Le Derout B.	PLoS One	10.1371/journal.pone.0265075	2022
	The Dual Role of Antimicrobial Proteins and Peptides: Exploring Their Direct Impact and Plant Defense-Enhancing Abilities.	Farvardin A, Gonzalez-Hernandez AI, Llorens E, Camanes G, Scalschi L, Vicedo B.	Plants (Basel)	10.3390/plants13152059	2024
	The coupling effect of Penicillium baileys W2 in the Aspergillus flavus inhibition and peanut growth promotion.	Wang Q, Shan S, Sun Q, Zhao X, Yuan C, Mou Y, Wang J, Yan C, Wang Q, Rui Q, Li C.	Synth Syst Biotechnol	10.1016/j.synbio.2025.09.003	2026
Genetics	Investigating the impact of insertion sequences and transposons in the genomes of the most significant phytopathogenic bacteria.	Fernandes AS, Campos KF, de Assis JCS, Goncalves OS, Queiroz MV, Bazzolli DMS, Santana MF.	Microb Genom	10.1099/mgen.0.001219	2024
	Molecular Analysis of L-Asparaginases for Clarification of the Mechanism of Action and Optimization of Pharmacological Functions.	Pokrovskaya MV, Pokrovsky VS, Aleksandrova SS, Sokolov NN, Zhdanov DD.	Pharmaceutics	10.3390/pharmaceutics14030599	2022
Metabolism	Interplay between Coumarin Accumulation, Iron Deficiency and Plant Resistance to Dickeya spp.	Perkowska I, Potrykus M, Siwinska J, Siudem D, Lojkowska E, Ihnatowicz A.	Int J Mol Sci	10.3390/ijms22126449	2021
	RNA Chaperones Hfq and ProQ Play a Key Role in the Virulence of the Plant Pathogenic Bacterium Dickeya dadantii.	Leonard S, Villard C, Nasser W, Reverchon S, Hommais F.	Front Microbiol	10.3389/fmicb.2021.687484	2021
	Mapping the Complex Transcriptional Landscape of the Phytopathogenic Bacterium Dickeya dadantii.	Forquet R, Jiang X, Nasser W, Hommais F, Reverchon S, Meyer S.	mBio	10.1128/mbio.00524-22	2022
	D-optimal Design Optimization of Solvent Mixture for Flavonoid Extraction from Phalaenopsis Leaves with Antioxidant Activity.	Sanjaya IPW, Sudarsono, Chan MT, Sukma D, Buchori A, Putra RP, Nurcholis W.	J Pharm Bioallied Sci	10.4103/jpbs.jpbs_372_23	2024
	Salicylic acid is a key player of Arabidopsis autophagy mutant susceptibility to the necrotrophic bacterium Dickeya dadantii.	Rigault M, Citerne S, Masclaux-Daubresse C, Dellagi A.	Sci Rep	10.1038/s41598-021-83067-6	2021
	Discovery of Anomer-Inverting Transglycosylase: Cyclic Glucohexadecaose-Producing Enzyme from Xanthomonas, a Phytopathogen.	Motouchi S, Komba S, Nakai H, Nakajima M.	J Am Chem Soc	10.1021/jacs.4c02579	2024
	Dickeya Manipulates Multiple Quorum Sensing Systems to Control Virulence and Collective Behaviors.	Liu F, Hu M, Zhang Z, Xue Y, Chen S, Hu A, Zhang LH, Zhou J.	Front Plant Sci	10.3389/fpls.2022.838125	2022
Transcriptome	Quantitative spatial analysis of bacterial transcriptome and chromosome structural data with GRATIOSA: application to twin-supercoiled domain distribution.	Pineau M, Forquet R, Reverchon S, Nasser W, Hommais F, Meyer S.	Nucleic Acids Res	10.1093/nar/gkaf452	2025
	Enhancing plant resilience: Nanotech solutions for sustainable agriculture.	Ahmad Z, Niyazi S, Firdoos A, Wang C, Manzoor MA, Ramakrishnan M, Upadhyay A, Ding Y.	Heliyon	10.1016/j.heliyon.2024.e40735	2024
	Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection.	Jiang X, Zghidi-Abouzid O, Oger-Desfeux C, Hommais F, Greliche N, Muskhelishvili G, Nasser W, Reverchon S.	Environ Microbiol	10.1111/1462-2920.13267	2016
Metabolism	Temporal control of Dickeya dadantii main virulence gene expression by growth phase-dependent alteration of regulatory nucleoprotein complexes.	Duprey A, Muskhelishvili G, Reverchon S, Nasser W.	Biochim Biophys Acta	10.1016/j.bbagrm.2016.08.001	2016
	MarR Family Transcriptional Regulators and Their Roles in Plant-Interacting Bacteria.	Nazaret F, Alloing G, Mandon K, Frendo P.	Microorganisms	10.3390/microorganisms11081936	2023
	Prevalence and Specificity of Chemoreceptor Profiles in Plant-Associated Bacteria.	Sanchis-Lopez C, Cerna-Vargas JP, Santamaria-Hernando S, Ramos C, Krell T, Rodriguez-Palenzuela P, Lopez-Solanilla E, Huerta-Cepas J, Rodriguez-Herva JJ.	mSystems	10.1128/msystems.00951-21	2021
Metabolism	The Stringent Response Induced by Phosphate Limitation Promotes Purine Salvage in Agrobacterium fabrum.	Sivapragasam S, Deochand DK, Meariman JK, Grove A.	Biochemistry	10.1021/acs.biochem.7b00844	2017
Metabolism	Regulation of pel genes, major virulence factors in the plant pathogen bacterium Dickeya dadantii, is mediated by cooperative binding of the nucleoid-associated protein H-NS.	Zghidi-Abouzid O, Herault E, Rimsky S, Reverchon S, Nasser W, Buckle M.	Res Microbiol	10.1016/j.resmic.2016.02.001	2016
	What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii.	Pineau M, Martis B S, Forquet R, Baude J, Villard C, Grand L, Popowycz F, Soulere L, Hommais F, Nasser W, Reverchon S, Meyer S.	Nucleic Acids Res	10.1093/nar/gkac679	2022
	Probing the Active Site of Class 3 L-Asparaginase by Mutagenesis: Mutations of the Ser-Lys Tandems of ReAV.	Pokrywka K, Grzechowiak M, Sliwiak J, Worsztynowicz P, Loch JI, Ruszkowski M, Gilski M, Jaskolski M.	Biomolecules	10.3390/biom15070944	2025
Pathogenicity	Understanding plant pathogen interactions using spatial and single-cell technologies.	Zhu J, Moreno-Perez A, Coaker G.	Commun Biol	10.1038/s42003-023-05156-8	2023
	Production of copper nanoparticle-immobilized chitin nanofibers and their role in plant disease control.	Egusa M, Watanabe S, Li H, Zewude DA, Ifuku S, Kaminaka H.	J Pestic Sci	10.1584/jpestics.d23-001	2023
Genetics	The role of replication-induced chromosomal copy numbers in spatio-temporal gene regulation and evolutionary chromosome plasticity.	Teufel M, Henkel W, Sobetzko P.	Front Microbiol	10.3389/fmicb.2023.1119878	2023
	Bactericides Based on Copper Nanoparticles Restrain Growth of Important Plant Pathogens.	Varympopi A, Dimopoulou A, Theologidis I, Karamanidou T, Kaldeli Kerou A, Vlachou A, Karfaridis D, Papafotis D, Hatzinikolaou DG, Tsouknidas A, Skandalis N.	Pathogens	10.3390/pathogens9121024	2020
	Use of multicolour fluorescence imaging for diagnosis of bacterial and fungal infection on zucchini by implementing machine learning.	Pineda M, Perez-Bueno ML, Paredes V, Baron M.	Funct Plant Biol	10.1071/fp16164	2017
	The CpxAR signaling system confers a fitness advantage for flea gut colonization by the plague bacillus.	Robin B, Dewitte A, Alaimo V, Lecoeur C, Pierre F, Billon G, Sebbane F, Bontemps-Gallo S.	J Bacteriol	10.1128/jb.00173-24	2024
Pathogenicity	Mechanisms of bacterial immunity, protection, and survival during interbacterial warfare.	Kennedy NW, Comstock LE.	Cell Host Microbe	10.1016/j.chom.2024.05.006	2024
Metabolism	SlyA regulates motA and motB, virulence and stress-related genes under conditions induced by the PhoP-PhoQ system in Dickeya dadantii 3937.	Haque MM, Hirata H, Tsuyumu S.	Res Microbiol	10.1016/j.resmic.2015.05.004	2015
Transcriptome	A straightforward and reliable method for bacterial in planta transcriptomics: application to the Dickeya dadantii/Arabidopsis thaliana pathosystem.	Chapelle E, Alunni B, Malfatti P, Solier L, Pedron J, Kraepiel Y, Van Gijsegem F.	Plant J	10.1111/tpj.12812	2015
	The Role of the [2Fe-2S] Cluster of Escherichia coli IscR in Responding to Redox-Cycling Agents.	Banerjee R, Mettert EL, Fleischhacker AS, Kiley PJ.	Mol Microbiol	10.1111/mmi.70021	2025
Metabolism	Salmonella enterica employs metabolic adaptation to plant environments.	Han M, Duan Y, Schikora A.	Front Plant Sci	10.3389/fpls.2025.1636330	2025
	XdfA, a novel membrane-associated DedA family protein of Xanthomonas campestris, is required for optimum virulence, maintenance of magnesium, and membrane homeostasis.	Padhi Y, Chatterjee S.	mBio	10.1128/mbio.01361-23	2023
	Distinct strategies of diguanylate cyclase domain proteins on inhibition of virulence and interbacterial competition by agrobacteria.	Lai X, Yu M, Cheng C-P, Lai E-M.	mBio	10.1128/mbio.00039-25	2025
Metabolism	Tricarboxylic Acid (TCA) Cycle Enzymes and Intermediates Modulate Intracellular Cyclic di-GMP Levels and the Production of Plant Cell Wall-Degrading Enzymes in Soft Rot Pathogen Dickeya dadantii.	Yuan X, Zeng Q, Xu J, Severin GB, Zhou X, Waters CM, Sundin GW, Ibekwe AM, Liu F, Yang CH.	Mol Plant Microbe Interact	10.1094/mpmi-07-19-0203-r	2020
	A multifunctional system for genome editing and large-scale interspecies gene transfer.	Teufel M, Klein CA, Mager M, Sobetzko P.	Nat Commun	10.1038/s41467-022-30843-1	2022
Pathogenicity	Green Synthesis of Silver Nanoparticles with Culture Supernatant of a Bacterium Pseudomonas rhodesiae and Their Antibacterial Activity against Soft Rot Pathogen Dickeya dadantii.	Hossain A, Hong X, Ibrahim E, Li B, Sun G, Meng Y, Wang Y, An Q.	Molecules	10.3390/molecules24122303	2019
	Relationships of Preharvest Weather Conditions and Soil Factors to Susceptibility of Sweetpotato to Postharvest Decay Caused by Rhizopus stolonifer and Dickeya dadantii.	Edmunds BA, Clark CA, Villordon AQ, Holmes GJ.	Plant Dis	10.1094/pdis-11-14-1143-re	2015
	Methanol chemoreceptor MtpA- and flagellin protein FliC-dependent methylotaxis contributes to the spatial colonization of PPFM in the phyllosphere.	Katayama S, Shiraishi K, Kaji K, Kawabata K, Tamura N, Tani A, Yurimoto H, Sakai Y.	ISME Commun	10.1093/ismeco/ycaf092	2025
Metabolism	Increased phosphorylation of the RcsB regulator of the RcsCDB phosphorelay in strains of Dickeya dadantii devoid of osmoregulated periplasmic glucans revealed by Phos-tag gel analysis.	Madec E, Bontemps-Gallo S, Lacroix JM.	Microbiology (Reading)	10.1099/mic.0.081273-0	2014
	Synthesis and Degradation of the Phytohormone Indole-3-Acetic Acid by the Versatile Bacterium Paraburkholderia xenovorans LB400 and Its Growth Promotion of Nicotiana tabacum Plant.	Vega-Celedon P, Castillo-Novales D, Bravo G, Cardenas F, Romero-Silva MJ, Seeger M.	Plants (Basel)	10.3390/plants13243533	2024
	Modularization of the type II secretion gene cluster from Xanthomonas euvesicatoria facilitates the identification of a structurally conserved XpsCLM assembly platform complex.	Goll S, Martin P, Marillonnet S, Buttner D.	PLoS Pathog	10.1371/journal.ppat.1013008	2025
	Five Plant Natural Products Are Potential Type III Secretion System Inhibitors to Effectively Control Soft-Rot Disease Caused by Dickeya.	Hu A, Hu M, Chen S, Xue Y, Tan X, Zhou J.	Front Microbiol	10.3389/fmicb.2022.839025	2022
Enzymology	Polyamine signaling communications play a key role in regulating the pathogenicity of Dickeya fangzhongdai.	Xie C, Gu W, Chen Z, Liang Z, Huang S, Zhang L-H, Chen S.	Microbiol Spectr	10.1128/spectrum.01965-23	2023
	Deciphering the components that coordinately regulate virulence factors of the soft rot pathogen Dickeya dadantii.	Wu X, Zeng Q, Koestler BJ, Waters CM, Sundin GW, Hutchins W, Yang CH.	Mol Plant Microbe Interact	10.1094/mpmi-01-14-0026-r	2014
	pH-Dependent DNA Distortion and Repression of Gene Expression by Pectobacterium atrosepticum PecS.	Deochand DK, Meariman JK, Grove A.	ACS Chem Biol	10.1021/acschembio.6b00168	2016
	Glucose Catabolite Repression Participates in the Regulation of Sialidase Biosynthesis by Antarctic Strain Penicillium griseofulvum P29.	Abrashev R, Krumova E, Petrova P, Eneva R, Dishliyska V, Gocheva Y, Engibarov S, Miteva-Staleva J, Spasova B, Kolyovska V, Angelova M.	J Fungi (Basel)	10.3390/jof10040241	2024
Metabolism	NAD Acts as an Integral Regulator of Multiple Defense Layers.	Petriacq P, Ton J, Patrit O, Tcherkez G, Gakiere B.	Plant Physiol	10.1104/pp.16.00780	2016
Metabolism	Inactivation of pecS restores the virulence of mutants devoid of osmoregulated periplasmic glucans in the phytopathogenic bacterium Dickeya dadantii.	Bontemps-Gallo S, Madec E, Lacroix JM.	Microbiology (Reading)	10.1099/mic.0.074484-0	2014
	Cardinal temperature differences, determined in vitro, between closely related species and subspecies of pectinolytic bacteria responsible for blackleg and soft rot on potatoes	du Raan S, Coutinho TA, van der Waals JE.	Eur J Plant Pathol	10.1007/s10658-015-0773-x	2016
	Ferrous Sulfate-Mediated Control of Phytophthora capsici Pathogenesis and Its Impact on Pepper Plant.	Du G, He H, Peng J, Li X, Liu Z, Liu W, Yang Y, Qi Z.	Plants (Basel)	10.3390/plants12244168	2023
	Microbiome Analysis of the Bamboo Aphid Melanaphis bambusae Infected with the Aphid Obligate Pathogen Conidiobolus obscurus (Entomophthoromycotina).	Yang T, Wang X, Zhou X.	Insects	10.3390/insects13111040	2022
	Application of antimicrobial peptides in plant protection: making use of the overlooked merits.	Tang R, Tan H, Dai Y, Li L, Huang Y, Yao H, Cai Y, Yu G.	Front Plant Sci	10.3389/fpls.2023.1139539	2023
	Major facility superfamily sugar transporter protein SsMFSST1 regulates Sporisorium scitamineum mating, pathogenicity, and sugar transport/absorption.	Zhang Y, He Y, Yan M, Zhang S, Zhou S, Shen W.	Microbiol Spectr	10.1128/spectrum.01956-24	2025
Metabolism	The Serratia marcescens Siderophore Serratiochelin Is Necessary for Full Virulence during Bloodstream Infection.	Weakland DR, Smith SN, Bell B, Tripathi A, Mobley HLT.	Infect Immun	10.1128/iai.00117-20	2020
Phylogeny	Characterization of Dickeya and Pectobacterium species by capillary electrophoretic techniques and MALDI-TOF MS.	Salplachta J, Kubesova A, Horky J, Matouskova H, Tesarova M, Horka M.	Anal Bioanal Chem	10.1007/s00216-015-8920-y	2015
Metabolism	A family 3 glycosyl hydrolase of Dickeya dadantii 3937 is involved in the cleavage of aromatic glucosides.	Charaoui-Boukerzaza S, Hugouvieux-Cotte-Pattat N.	Microbiology (Reading)	10.1099/mic.0.071407-0	2013
Metabolism	Role of the LysR-type transcriptional regulator PecT and DNA supercoiling in the thermoregulation of pel genes, the major virulence factors in Dickeya dadantii.	Herault E, Reverchon S, Nasser W.	Environ Microbiol	10.1111/1462-2920.12198	2014
Genetics	High genetic diversity and different type VI secretion systems in Enterobacter species revealed by comparative genomics analysis.	Peng M, Lin W, Zhou A, Jiang Z, Zhou F, Wang Z.	BMC Microbiol	10.1186/s12866-023-03164-6	2024
	First Report of Bacterial Soft Rot of Konnyaku Caused by Dickeya dadantii in China.	Wei JF, Wei JH.	Plant Dis	10.1094/pdis-06-13-0679-pdn	2014
	Autophagy and Bacterial infections.	Cadwell K, Abraham C, Bel S, Chauhan S, Coers J, Colombo MI, Davis JR, Hofius D, Nguyen HTT, Ogawa M, Roy CR, Shao F, Shizukuishi S, Stallings CL, Szczesna M, Taylor G, Thurston TL, Watson R, Wileman T, Xu Y, Zamboni DS.	Autophagy Rep	10.1080/27694127.2025.2542904	2025
	The diguanylate cyclase GcpA inhibits the production of pectate lyases via the H-NS protein and RsmB regulatory RNA in Dickeya dadantii.	Yuan X, Tian F, He C, Severin GB, Waters CM, Zeng Q, Liu F, Yang CH.	Mol Plant Pathol	10.1111/mpp.12665	2018
Metabolism	Jasmonate-dependent modifications of the pectin matrix during potato development function as a defense mechanism targeted by Dickeya dadantii virulence factors.	Taurino M, Abelenda JA, Rio-Alvarez I, Navarro C, Vicedo B, Farmaki T, Jimenez P, Garcia-Agustin P, Lopez-Solanilla E, Prat S, Rojo E, Sanchez-Serrano JJ, Sanmartin M.	Plant J	10.1111/tpj.12393	2014
	Substrate Affinity Is Not Crucial for Therapeutic L-Asparaginases: Antileukemic Activity of Novel Bacterial Enzymes.	Sciuk A, Wator K, Staron I, Worsztynowicz P, Pokrywka K, Sliwiak J, Kilichowska M, Pietruszewska K, Mazurek Z, Skalniak A, Lewandowski K, Jaskolski M, Loch JI, Surmiak M.	Molecules	10.3390/molecules29102272	2024
Metabolism	Anatomy of secretin binding to the Dickeya dadantii type II secretion system pilotin.	Rehman S, Gu S, Shevchik VE, Pickersgill RW.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444913007658	2013
	Unveiling the multifaceted domain polymorphism of the Menshen antiphage system.	Li H, Tan Y, Basu D, Corbett KD, Zhang D.	Nucleic Acids Res	10.1093/nar/gkaf357	2025
	A type VI secretion system effector TseG of Pantoea ananatis is involved in virulence and antibacterial activity.	Zhao X, Gao L, Ali Q, Yu C, Yuan B, Huang H, Long J, Gu Q, Wu H, Gao X.	Mol Plant Pathol	10.1111/mpp.13442	2024
	Detection of Bacterial Infection in Melon Plants by Classification Methods Based on Imaging Data.	Pineda M, Perez-Bueno ML, Baron M.	Front Plant Sci	10.3389/fpls.2018.00164	2018
	CRISPR-Cas immunity is repressed by the LysR-type transcriptional regulator PigU.	Smith LM, Hampton HG, Yevstigneyeva MS, Mahler M, Paquet ZSM, Fineran PC.	Nucleic Acids Res	10.1093/nar/gkad1165	2024
	Emergence of supercoiling-mediated regulatory networks through the evolution of bacterial chromosome organization.	Grohens T, Meyer S, Beslon G.	PLoS Comput Biol	10.1371/journal.pcbi.1013482	2025
Metabolism	Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants.	Royet K, Parisot N, Rodrigue A, Gueguen E, Condemine G.	Mol Plant Pathol	10.1111/mpp.12754	2019
Metabolism	Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling.	El Houdaigui B, Forquet R, Hindre T, Schneider D, Nasser W, Reverchon S, Meyer S.	Nucleic Acids Res	10.1093/nar/gkz300	2019
	Vfm a new quorum sensing system controls the virulence of Dickeya dadantii.	Nasser W, Dorel C, Wawrzyniak J, Van Gijsegem F, Groleau MC, Deziel E, Reverchon S.	Environ Microbiol	10.1111/1462-2920.12049	2013
Genetics	Patterns of Genomic Variations in the Plant Pathogen Dickeya solani.	Khayi S, Chan KG, Faure D.	Microorganisms	10.3390/microorganisms10112254	2022
	The Agrobacterium fabrum efflux pump PecM is produced in response to the plant exudate 4-hydroxybenzaldehyde to avoid disruption of central metabolism.	Ghosh A, Grove A.	J Bacteriol	10.1128/jb.00150-25	2025
Metabolism	Bacterial pectate lyases, structural and functional diversity.	Hugouvieux-Cotte-Pattat N, Condemine G, Shevchik VE.	Environ Microbiol Rep	10.1111/1758-2229.12166	2014
Metabolism	Concentration of osmoregulated periplasmic glucans (OPGs) modulates the activation level of the RcsCD RcsB phosphorelay in the phytopathogen bacteria Dickeya dadantii.	Bontemps-Gallo S, Madec E, Dondeyne J, Delrue B, Robbe-Masselot C, Vidal O, Prouvost AF, Boussemart G, Bohin JP, Lacroix JM.	Environ Microbiol	10.1111/1462-2920.12054	2013
Pathogenicity	A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates.	Pedersen JS, Carstens AB, Rothgard MM, Roy C, Viry A, Papudeshi B, Kot W, Hille F, Franz CMAP, Edwards R, Hansen LH.	Virus Res	10.1016/j.virusres.2024.199435	2024
	Bacterial cellulose: Enhancing productivity and material properties through repeated harvest.	Rackov N, Janssen N, Akkache A, Drotleff B, Beyer B, Scoppola E, Vrana NE, Hengge R, Bidan CM, Hathroubi S.	Biofilm	10.1016/j.bioflm.2025.100276	2025
	Citrate Synthase GltA Modulates the 2,4-Diacetylphloroglucinol Biosynthesis of Pseudomonas fluorescens 2P24 and is Essential for the Biocontrol Capacity.	Yang Q, Yan Q, Zhang B, Zhang LQ, Wu X.	J Agric Food Chem	10.1021/acs.jafc.3c03051	2023
Metabolism	The nucleoid-associated protein Fis directly modulates the synthesis of cellulose, an essential component of pellicle-biofilms in the phytopathogenic bacterium Dickeya dadantii.	Prigent-Combaret C, Zghidi-Abouzid O, Effantin G, Lejeune P, Reverchon S, Nasser W.	Mol Microbiol	10.1111/j.1365-2958.2012.08182.x	2012
	Investigating the Role of Viruses in the Rapid Decline of Young Apple Trees in High-Density Orchards in New York.	Wunsch AO, Miranda Sazo M, van Zoeren J, Lamour KH, Hurtado-Gonzales OP, Khan A, Fuchs M.	Plants (Basel)	10.3390/plants13202866	2024
	Nematocidal and Bactericidal Activities of Green Synthesized Silver Nanoparticles Mediated by Ficus sycomorus Leaf Extract.	Elkobrosy D, Al-Askar AA, El-Gendi H, Su Y, Nabil R, Abdelkhalek A, Behiry S.	Life (Basel)	10.3390/life13051083	2023
Metabolism	The role for TolA in enterohemorrhagic Escherichia coli pathogenesis and virulence gene transcription.	Morgan JK, Ortiz JA, Riordan JT.	Microb Pathog	10.1016/j.micpath.2014.10.010	2014
Metabolism	Substrate recognition by the bacterial type II secretion system: more than a simple interaction.	Pineau C, Guschinskaya N, Robert X, Gouet P, Ballut L, Shevchik VE.	Mol Microbiol	10.1111/mmi.12744	2014
Pathogenicity	Bacterial secretion system functions: evidence of interactions and downstream implications.	Maphosa S, Moleleki LN, Motaung TE.	Microbiology (Reading)	10.1099/mic.0.001326	2023
Metabolism	Bacterial virulence and Fis: adapting regulatory networks to the host environment.	Duprey A, Reverchon S, Nasser W.	Trends Microbiol	10.1016/j.tim.2013.11.008	2014
	Structure of the oligogalacturonate-specific KdgM porin.	Hutter CA, Lehner R, Wirth Ch, Condemine G, Peneff C, Schirmer T.	Acta Crystallogr D Biol Crystallogr	10.1107/s1399004714007147	2014
Metabolism	Modeling the bioconversion of polysaccharides in a continuous reactor: A case study of the production of oligogalacturonates by Dickeya dadantii.	Sepulchre JA, Reverchon S, Gouze JL, Nasser W.	J Biol Chem	10.1074/jbc.ra118.004615	2019
	Identification of Dickeya zeae as a Causal Agent of Bacterial Soft Rot in Banana in China.	Zhang J, Shen H, Pu X, Lin B, Hu J.	Plant Dis	10.1094/pdis-07-13-0711-re	2014
Enzymology	Isolation of Dickeya dadantii strains from potato disease and biocontrol by their bacteriophages.	Soleimani-Delfan A, Etemadifar Z, Emtiazi G, Bouzari M.	Braz J Microbiol	10.1590/s1517-838246320140498	2015
	Regulation of corA, the Magnesium, Nickel, Cobalt Transporter, and Its Role in the Virulence of the Soft Rot Pathogen, Pectobacterium versatile Strain Ecc71.	Kersey CM, Dumenyo CK.	Microorganisms	10.3390/microorganisms11071747	2023
	L-carnitine and Vitamin B Complex for PEG-L-asparaginase-Induced Hepatotoxicity.	Arora S, Klair J, Bellizzi AM, Tanaka T.	ACG Case Rep J	10.14309/crj.0000000000000194	2019
Metabolism	Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides.	Rio-Alvarez I, Rodriguez-Herva JJ, Cuartas-Lanza R, Toth I, Pritchard L, Rodriguez-Palenzuela P, Lopez-Solanilla E.	Mol Plant Microbe Interact	10.1094/mpmi-09-11-0247	2012
Metabolism	Pectobacterium atrosepticum KDPG aldolase, Eda, participates in the Entner-Doudoroff pathway and independently inhibits expression of virulence determinants.	Wang H, Wang Y, Humphris S, Nie W, Zhang P, Wright F, Campbell E, Hu B, Fan J, Toth I.	Mol Plant Pathol	10.1111/mpp.13025	2021
Enzymology	Design and comparative characterization of RecA variants.	Del Val E, Nasser W, Abaibou H, Reverchon S.	Sci Rep	10.1038/s41598-021-00589-9	2021
Pathogenicity	Development of a quantitative assay amenable for high-throughput screening to target the type II secretion system for new treatments against plant-pathogenic bacteria.	Tran N, Zielke RA, Vining OB, Azevedo MD, Armstrong DJ, Banowetz GM, McPhail KL, Sikora AE.	J Biomol Screen	10.1177/1087057113485426	2013
	Conserved copper regulation of the antimicrobial isocyanide brassicicolin A in Alternaria brassicicola.	Nadig N, Park SC, Bok JW, Keller NP.	Fungal Genet Biol	10.1016/j.fgb.2023.103839	2023
	Plesiomonas shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.	Adam Y, Brezellec P, Espinosa E, Besombes A, Naquin D, Paly E, Possoz C, van Dijk E, Barre FX, Ferat JL.	Genome Biol Evol	10.1093/gbe/evac011	2022
	Cell individuality: the bistable gene expression of the type III secretion system in Dickeya dadantii 3937.	Zeng Q, Laiosa MD, Steeber DA, Biddle EM, Peng Q, Yang CH.	Mol Plant Microbe Interact	10.1094/mpmi-05-11-0105	2012
	An Azospirillum brasilense chemoreceptor that mediates nitrate chemotaxis has conditional roles in the colonization of plant roots.	Ganusova EE, Russell MH, Patel S, Seats T, Alexandre G.	Appl Environ Microbiol	10.1128/aem.00760-24	2024
	Role of the Dickeya dadantii Dps protein.	Boughammoura A, Expert D, Franza T.	Biometals	10.1007/s10534-011-9515-5	2012
	Electrically silent mutants unravel the mechanism of binding-gating coupling in Cys-loop receptors.	Godellas NE, Cymes GD, Grosman C.	Sci Adv	10.1126/sciadv.adq8048	2024
Enzymology	Dickeya dadantii pectic enzymes necessary for virulence are also responsible for activation of the Arabidopsis thaliana innate immune system.	Expert D, Patrit O, Shevchik VE, Perino C, Boucher V, Creze C, Wenes E, Fagard M.	Mol Plant Pathol	10.1111/mpp.12522	2018
Phenotype	Antibacterial Activity and Anti-Quorum Sensing Mediated Phenotype in Response to Essential Oil from Melaleuca bracteata Leaves.	Wang W, Huang X, Yang H, Niu X, Li D, Yang C, Li L, Zou L, Qiu Z, Wu S, Li Y.	Int J Mol Sci	10.3390/ijms20225696	2019
Genetics	Comparative Genomic and Functional Analysis of c-di-GMP Metabolism and Regulatory Proteins in Bacillus velezensis LQ-3.	Li R, Yang P, Zhang H, Wang C, Zhao F, Liu J, Wang Y, Liang Y, Sun T, Xie X.	Microorganisms	10.3390/microorganisms12081724	2024
	Interplay between the RNA Chaperone Hfq, Small RNAs and Transcriptional Regulator OmpR Modulates Iron Homeostasis in the Enteropathogen Yersinia enterocolitica.	Jaworska K, Konarska J, Gomza P, Rozen P, Nieckarz M, Krawczyk-Balska A, Brzostek K, Raczkowska A.	Int J Mol Sci	10.3390/ijms241311157	2023
	Development of a Method to Monitor Gene Expression in Single Bacterial Cells During the Interaction With Plants and Use to Study the Expression of the Type III Secretion System in Single Cells of Dickeya dadantii in Potato.	Cui Z, Yuan X, Yang CH, Huntley RB, Sun W, Wang J, Sundin GW, Zeng Q.	Front Microbiol	10.3389/fmicb.2018.01429	2018
Genetics	Sensing Host Health: Insights from Sensory Protein Signature of the Metagenome.	Bhar S, Singh R, Pinna NK, Bose T, Dutta A, Mande SS.	Appl Environ Microbiol	10.1128/aem.00596-22	2022
	The EnvZ-OmpR Two-Component Signaling System Is Inactivated in a Mutant Devoid of Osmoregulated Periplasmic Glucans in Dickeya dadantii.	Caby M, Bontemps-Gallo S, Gruau P, Delrue B, Madec E, Lacroix JM.	Front Microbiol	10.3389/fmicb.2018.02459	2018
	SydR, a redox-sensing MarR-type regulator of Sinorhizobium meliloti, is crucial for symbiotic infection of Medicago truncatula roots.	Nazaret F, Farajzadeh D, Mejias J, Pacoud M, Cosi A, Frendo P, Alloing G, Mandon K.	mBio	10.1128/mbio.02275-24	2024
	The two-component system CpxA/CpxR regulates pathogenesis and stress adaptability in the poplar canker bacterium Lonsdalea populi.	Yang R, Ming Z, Zeng S, Wang Y, Wang Y, Li A.	Mol Plant Pathol	10.1111/mpp.70029	2024
	Genetic components of Escherichia coli involved in its complex prey-predator interaction with Myxococcus xanthus.	Zhang N, Li T, Pan H, Wang Y, Li Q, Luan J, He X, Shi W, Li Y, Wang C, Zhang F, Hu W.	Front Microbiol	10.3389/fmicb.2023.1304874	2023
	Plant Defense Stimulator Mediated Defense Activation Is Affected by Nitrate Fertilization and Developmental Stage in Arabidopsis thaliana.	Verly C, Djoman ACR, Rigault M, Giraud F, Rajjou L, Saint-Macary ME, Dellagi A.	Front Plant Sci	10.3389/fpls.2020.00583	2020
Metabolism	PecS is an important player in the regulatory network governing the coordinated expression of virulence genes during the interaction between Dickeya dadantii 3937 and plants.	Mhedbi-Hajri N, Malfatti P, Pedron J, Gaubert S, Reverchon S, Van Gijsegem F.	Environ Microbiol	10.1111/j.1462-2920.2011.02566.x	2011
	LOV1 protein of Pseudomonas cichorii JBC1 modulates its virulence and lifestyles in response to blue light.	Khanh NV, Lee YH.	Sci Rep	10.1038/s41598-024-66422-1	2024
Pathogenicity	Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores.	Aznar A, Chen NW, Rigault M, Riache N, Joseph D, Desmaele D, Mouille G, Boutet S, Soubigou-Taconnat L, Renou JP, Thomine S, Expert D, Dellagi A.	Plant Physiol	10.1104/pp.113.233585	2014
Genetics	Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria.	Urriza M, Dimaria G, de Oliveira LO, Catara V, Murillo J.	DNA Res	10.1093/dnares/dsaf009	2025
	Unravelling the Roles of Bacterial Nanomachines Bistability in Pathogens' Life Cycle.	Gory R, Personnic N, Blaha D.	Microorganisms	10.3390/microorganisms12091930	2024
	The Dickeya dadantii biofilm matrix consists of cellulose nanofibres, and is an emergent property dependent upon the type III secretion system and the cellulose synthesis operon.	Jahn CE, Selimi DA, Barak JD, Charkowski AO.	Microbiology (Reading)	10.1099/mic.0.051003-0	2011
Metabolism	RpoN mediates biofilm formation by directly controlling vps gene cluster and c-di-GMP synthetic metabolism in V. alginolyticus.	Zhang N, Zeng Y, Ye J, Lin C, Gong X, Long H, Chen H, Xie Z.	Biofilm	10.1016/j.bioflm.2024.100242	2025
	Isolation and Characterization of Outer Membrane Vesicles of Pectobacterium brasiliense 1692.	Maphosa S, Moleleki LN.	Microorganisms	10.3390/microorganisms9091918	2021
	Quantitative Methods to Assess Differential Susceptibility of Arabidopsis thaliana Natural Accessions to Dickeya dadantii.	Rigault M, Buellet A, Masclaux-Daubresse C, Fagard M, Chardon F, Dellagi A.	Front Plant Sci	10.3389/fpls.2017.00394	2017
	Cyt toxin expression reveals an inverse regulation of insect and plant virulence factors of Dickeya dadantii.	Costechareyre D, Dridi B, Rahbe Y, Condemine G.	Environ Microbiol	10.1111/j.1462-2920.2010.02305.x	2010
	A Siderophore Analog of Fimsbactin from Acinetobacter Hinders Growth of the Phytopathogen Pseudomonas syringae and Induces Systemic Priming of Immunity in Arabidopsis thaliana.	Betoudji F, Abd El Rahman T, Miller MJ, Ghosh M, Jacques M, Bouarab K, Malouin F.	Pathogens	10.3390/pathogens9100806	2020
Metabolism	Regulatory mechanisms of exoribonuclease PNPase and regulatory small RNA on T3SS of Dickeya dadantii.	Zeng Q, Ibekwe AM, Biddle E, Yang CH.	Mol Plant Microbe Interact	10.1094/mpmi-03-10-0063	2010
Metabolism	ClpXP protease regulates the type III secretion system of Dickeya dadantii 3937 and is essential for the bacterial virulence.	Li Y, Yamazaki A, Zou L, Biddle E, Zeng Q, Wang Y, Lin H, Wang Q, Yang CH.	Mol Plant Microbe Interact	10.1094/mpmi-23-7-0871	2010
Metabolism	Systematic targeted mutagenesis of the MarR/SlyA family members of Dickeya dadantii 3937 reveals a role for MfbR in the modulation of virulence gene expression in response to acidic pH.	Reverchon S, Van Gijsegem F, Effantin G, Zghidi-Abouzid O, Nasser W.	Mol Microbiol	10.1111/j.1365-2958.2010.07388.x	2010
	Manipulation of ABA Content in Arabidopsis thaliana Modifies Sensitivity and Oxidative Stress Response to Dickeya dadantii and Influences Peroxidase Activity.	Van Gijsegem F, Pedron J, Patrit O, Simond-Cote E, Maia-Grondard A, Petriacq P, Gonzalez R, Blottiere L, Kraepiel Y.	Front Plant Sci	10.3389/fpls.2017.00456	2017
	Towards a dependable data set of structures for L-asparaginase research.	Wlodawer A, Dauter Z, Lubkowski J, Loch JI, Brzezinski D, Gilski M, Jaskolski M.	Acta Crystallogr D Struct Biol	10.1107/s2059798324005461	2024
	Development of PCR-Based Detection System for Soft Rot Pectobacteriaceae Pathogens Using Molecular Signatures.	Kabir MN, Taheri A, Dumenyo CK.	Microorganisms	10.3390/microorganisms8030358	2020
Metabolism	New insights into the biological role of the osmoregulated periplasmic glucans in pathogenic and symbiotic bacteria.	Bontemps-Gallo S, Lacroix JM.	Environ Microbiol Rep	10.1111/1758-2229.12325	2015
Enzymology	Structure-function analysis of pectate lyase Pel3 reveals essential facets of protein recognition by the bacterial type 2 secretion system.	Pineau C, Guschinskaya N, Goncalves IR, Ruaudel F, Robert X, Gouet P, Ballut L, Shevchik VE.	J Biol Chem	10.1016/j.jbc.2021.100305	2021
	Proteomic analysis of meropenem-induced outer membrane vesicles released by carbapenem-resistant Klebsiella pneumoniae.	Fan F, Chen G, Deng S, Wei L.	Microbiol Spectr	10.1128/spectrum.02917-23	2024
	A Switch from Latent to Typical Infection during Pectobacterium atrosepticum-Tobacco Interactions: Predicted and True Molecular Players.	Tsers I, Parfirova O, Moruzhenkova V, Petrova O, Gogoleva N, Vorob'ev V, Gogolev Y, Gorshkov V.	Int J Mol Sci	10.3390/ijms241713283	2023
Enzymology	Phylogenetics-based identification and characterization of a superior 2,3-butanediol dehydrogenase for Zymomonas mobilis expression.	Subramanian V, Lunin VV, Farmer SJ, Alahuhta M, Moore KT, Ho A, Chaudhari YB, Zhang M, Himmel ME, Decker SR.	Biotechnol Biofuels	10.1186/s13068-020-01820-x	2020
	An overview of the phytosynthesis of various metal nanoparticles.	Tiwari S, Verma SK, Bhagat P, Yadav S, Sharma R, Aseri GK, Sohal JS, Sharma D, Dwivedi UK, Singh R, Singh D, Khare N.	3 Biotech	10.1007/s13205-021-03014-0	2021
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Enzymology	Genetic analysis of two phosphodiesterases reveals cyclic diguanylate regulation of virulence factors in Dickeya dadantii.	Yi X, Yamazaki A, Biddle E, Zeng Q, Yang CH.	Mol Microbiol	10.1111/j.1365-2958.2010.07246.x	2010
	Multicolor Fluorescence Imaging as a Candidate for Disease Detection in Plant Phenotyping.	Perez-Bueno ML, Pineda M, Cabeza FM, Baron M.	Front Plant Sci	10.3389/fpls.2016.01790	2016
	A molecular comparison of [Fe-S] cluster-based homeostasis in Escherichia coli and Pseudomonas aeruginosa.	Lo Sciuto A, D'Angelo F, Spinnato MC, Garcia PS, Genah S, Matteo C, Sechet E, Banin E, Barras F, Imperi F.	mBio	10.1128/mbio.01206-24	2024
	Transcription Factor PecS Mediates Agrobacterium fabrum Fitness and Survival.	Nwokocha GC, Adhikari P, Iqbal A, Elkholy H, Doerrler WT, Larkin JC, Grove A.	J Bacteriol	10.1128/jb.00478-22	2023
Metabolism	The Tat pathway of plant pathogen Dickeya dadantii 3937 contributes to virulence and fitness.	Rodriguez-Sanz M, Antunez-Lamas M, Rojas C, Lopez-Solanilla E, Palacios JM, Rodriguez-Palenzuela P, Rey L.	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01844.x	2010
	Identification of hrpL up-regulated genes of Dickeya dadantii	Shi XY, Cooksey DA.	Eur J Plant Pathol	10.1007/s10658-008-9397-8	2009
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Genetics	APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data.	Leonard S, Meyer S, Lacour S, Nasser W, Hommais F, Reverchon S.	Nucleic Acids Res	10.1093/nar/gkz485	2019
	Recent advances in L-Asparaginase enzyme production and formulation development for acrylamide reduction during food processing.	Jana A, Biswas S, Ghosh R, Modak R.	Food Chem X	10.1016/j.fochx.2024.102055	2025
Pathogenicity	Antimicrobial Peptide Resistance Genes in the Plant Pathogen Dickeya dadantii.	Pandin C, Caroff M, Condemine G.	Appl Environ Microbiol	10.1128/aem.01757-16	2016
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Pathogenicity	Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues.	Antunez-Lamas M, Cabrera E, Lopez-Solanilla E, Solano R, Gonzalez-Melendi P, Chico JM, Toth I, Birch P, Pritchard L, Liu H, Rodriguez-Palenzuela P.	Mol Microbiol	10.1111/j.1365-2958.2009.06888.x	2009
Metabolism	Cell-length heterogeneity: a population-level solution to growth/virulence trade-offs in the plant pathogen Dickeya dadantii.	Cui Z, Yang CH, Kharadi RR, Yuan X, Sundin GW, Triplett LR, Wang J, Zeng Q.	PLoS Pathog	10.1371/journal.ppat.1007703	2019
	Genome Sequence of the Emerging Plant Pathogen Dickeya solani Strain RNS 08.23.3.1A.	Khayi S, Mondy S, Beury-Cirou A, Moumni M, Helias V, Faure D.	Genome Announc	10.1128/genomea.01270-13	2014
	Hfq Is a Critical Modulator of Pathogenicity of Dickeya oryzae in Rice Seeds and Potato Tubers.	Shi Z, Wang Q, Wang S, Wang C, Zhang LH, Liang Z.	Microorganisms	10.3390/microorganisms10051031	2022
Metabolism	Transcriptome analysis of the Dickeya dadantii PecS regulon during the early stages of interaction with Arabidopsis thaliana.	Pedron J, Chapelle E, Alunni B, Van Gijsegem F.	Mol Plant Pathol	10.1111/mpp.12549	2018
Metabolism	Alterations of iron distribution in Arabidopsis tissues infected by Dickeya dadantii.	Aznar A, Patrit O, Berger A, Dellagi A.	Mol Plant Pathol	10.1111/mpp.12208	2015
	Scaffolding Protein GspB/OutB Facilitates Assembly of the Dickeya dadantii Type 2 Secretion System by Anchoring the Outer Membrane Secretin Pore to the Inner Membrane and to the Peptidoglycan Cell Wall.	Zhang S, Gu S, Rycroft P, Ruaudel F, Delolme F, Robert X, Ballut L, Pickersgill RW, Shevchik VE.	mBio	10.1128/mbio.00253-22	2022
Metabolism	Massive production of butanediol during plant infection by phytopathogenic bacteria of the genera Dickeya and Pectobacterium.	Effantin G, Rivasseau C, Gromova M, Bligny R, Hugouvieux-Cotte-Pattat N.	Mol Microbiol	10.1111/j.1365-2958.2011.07881.x	2011
	Innovation and Application of the Type III Secretion System Inhibitors in Plant Pathogenic Bacteria.	Yuan X, Yu M, Yang CH.	Microorganisms	10.3390/microorganisms8121956	2020
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	Iron Induces Resistance Against the Rice Blast Fungus Magnaporthe oryzae Through Potentiation of Immune Responses.	Sanchez-Sanuy F, Mateluna-Cuadra R, Tomita K, Okada K, Sacchi GA, Campo S, San Segundo B.	Rice (N Y)	10.1186/s12284-022-00609-w	2022
Metabolism	Unique features of Erwinia chrysanthemi (Dickeya dadantii) RA3B genes involved in the blue indigoidine production.	Chu MK, Lin LF, Twu CS, Lin RH, Lin YC, Hsu ST, Tzeng KC, Huang HC.	Microbiol Res	10.1016/j.micres.2009.09.004	2010
	Coherent Domains of Transcription Coordinate Gene Expression During Bacterial Growth and Adaptation.	Muskhelishvili G, Forquet R, Reverchon S, Meyer S, Nasser W.	Microorganisms	10.3390/microorganisms7120694	2019
Metabolism	The opgC gene is required for OPGs succinylation and is osmoregulated through RcsCDB and EnvZ/OmpR in the phytopathogen Dickeya dadantii.	Bontemps-Gallo S, Madec E, Robbe-Masselot C, Souche E, Dondeyne J, Lacroix JM.	Sci Rep	10.1038/srep19619	2016
	Chemotactic Responses of Xanthomonas with Different Host Ranges.	Sena-Velez M, Ferragud E, Redondo C, Graham JH, Cubero J.	Microorganisms	10.3390/microorganisms11010043	2022
	Temporal and Spatial Resolution of Activated Plant Defense Responses in Leaves of Nicotiana benthamiana Infected with Dickeya dadantii.	Perez-Bueno ML, Granum E, Pineda M, Flors V, Rodriguez-Palenzuela P, Lopez-Solanilla E, Baron M.	Front Plant Sci	10.3389/fpls.2015.01209	2015
Metabolism	Crystal structure of the nucleoid-associated protein Fis (PA4853) from Pseudomonas aeruginosa.	Zhou J, Gao Z, Zhang H, Dong Y.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x20005427	2020
Enzymology	Investigation of antioxidant and anticancer activities of unsaturated oligo-galacturonic acids produced by pectinase of Streptomyces hydrogenans YAM1.	Hosseini Abari A, Amini Rourani H, Ghasemi SM, Kim H, Kim YG.	Sci Rep	10.1038/s41598-021-87804-9	2021
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	Biosynthesis of silver nanoparticles using Pseudomonas canadensis, and its antivirulence effects against Pseudomonas tolaasii, mushroom brown blotch agent.	Ghasemi S, Harighi B, Ashengroph M.	Sci Rep	10.1038/s41598-023-30863-x	2023
Enzymology	Biochemical characterization of extremozyme L-asparaginase from Pseudomonas sp. PCH199 for therapeutics.	Darnal S, Patial V, Kumar V, Kumar S, Kumar V, Padwad YS, Singh D, Singh D.	AMB Express	10.1186/s13568-023-01521-2	2023
Enzymology	Bacterial secretion systems contribute to rapid tissue decay in button mushroom soft rot disease.	Wein P, Dornblut K, Herkersdorf S, Kruger T, Molloy EM, Brakhage AA, Hoffmeister D, Hertweck C.	mBio	10.1128/mbio.00787-23	2023
	Sugar transporter (MfsX) of the major facilitator superfamily is required for flagella-mediated pathogenesis in Dickeya dadantii 3937	Joko T, Hirata H, Tsuyumu S.	J Gen Plant Pathol	10.1007/s10327-007-0018-8	2007
	The nucleoid-associated protein IHF acts as a 'transcriptional domainin' protein coordinating the bacterial virulence traits with global transcription.	Reverchon S, Meyer S, Forquet R, Hommais F, Muskhelishvili G, Nasser W.	Nucleic Acids Res	10.1093/nar/gkaa1227	2021
	Relationship between the Chromosome Structural Dynamics and Gene Expression-A Chicken and Egg Dilemma?	Le Berre D, Reverchon S, Muskhelishvili G, Nasser W.	Microorganisms	10.3390/microorganisms10050846	2022
	Nicotinamide adenine dinucleotide induced resistance against root-knot nematode Meloidogyne hapla is based on increased tomato basal defense.	Abdelsamad N, Regmi H, Desaeger J, DiGennaro P.	J Nematol	10.21307/jofnem-2019-022	2019
Metabolism	The Response regulator HrpY of Dickeya dadantii 3937 regulates virulence genes not linked to the hrp cluster.	Yap MN, Yang CH, Charkowski AO.	Mol Plant Microbe Interact	10.1094/mpmi-21-3-0304	2008
	Structural basis for guanidine sensing by the ykkC family of riboswitches.	Battaglia RA, Price IR, Ke A.	RNA	10.1261/rna.060186.116	2017
Enzymology	The secreted feruloyl esterase of Verticillium dahliae modulates host immunity via degradation of GhDFR.	Wang Y, Liao X, Shang W, Qin J, Xu X, Hu X.	Mol Plant Pathol	10.1111/mpp.13431	2024
	Structure of an Alkaline Pectate Lyase and Rational Engineering with Improved Thermo-Alkaline Stability for Efficient Ramie Degumming.	Zhou C, Cao Y, Xue Y, Liu W, Ju J, Ma Y.	Int J Mol Sci	10.3390/ijms24010538	2022
Metabolism	Proteomic analysis of the carbonate insoluble outer membrane fraction of the soft-rot pathogen Dickeya dadantii (syn. Erwinia chrysanthemi) strain 3937.	Babujee L, Venkatesh B, Yamazaki A, Tsuyumu S.	J Proteome Res	10.1021/pr060423l	2007
Metabolism	Interplay of classic Exp and specific Vfm quorum sensing systems on the phenotypic features of Dickeya solani strains exhibiting different virulence levels.	Potrykus M, Hugouvieux-Cotte-Pattat N, Lojkowska E.	Mol Plant Pathol	10.1111/mpp.12614	2018
	Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection.	Luneau JS, Baudin M, Quiroz Monnens T, Carrere S, Bouchez O, Jardinaud MF, Gris C, Francois J, Ray J, Torralba B, Arlat M, Lewis JD, Lauber E, Deutschbauer AM, Noel LD, Boulanger A.	New Phytol	10.1111/nph.18313	2022
	Evolutionary analysis and structure modelling of the Rcs-repressor IgaA unveil a functional role of two cytoplasmic small beta-barrel (SBB) domains.	Rodriguez L, Penalver M, Casino P, Garcia-Del Portillo F.	Heliyon	10.1016/j.heliyon.2023.e16661	2023
	Cross-Over Pathogenic Bacteria Detected in Infected Tomatoes (Solanum lycopersicum L.) and Peppers (Capsicum annuum L.) in Bulgaria.	Kizheva Y, Georgiev G, Donchev D, Dimitrova M, Pandova M, Rasheva I, Hristova P.	Pathogens	10.3390/pathogens11121507	2022
	The International Trade of Ware Vegetables and Orna-Mental Plants-An Underestimated Risk of Accelerated Spreading of Phytopathogenic Bacteria in the Era of Globalisation and Ongoing Climatic Changes.	Smoktunowicz M, Jonca J, Stachowska A, May M, Waleron MM, Waleron M, Waleron K.	Pathogens	10.3390/pathogens11070728	2022
Genetics	Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.	Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G, San Francisco MJ, Charkowski AO, Py B, Bell K, Rauscher L, Rodriguez-Palenzuela P, Toussaint A, Holeva MC, He SY, Douet V, Boccara M, Blanco C, Toth I, Anderson BD, Biehl BS, Mau B, Flynn SM, Barras F, Lindeberg M, Birch PR, Tsuyumu S, Shi X, Hibbing M, Yap MN, Carpentier M, Dassa E, Umehara M, Kim JF, Rusch M, Soni P, Mayhew GF, Fouts DE, Gill SR, Blattner FR, Keen NT, Perna NT.	J Bacteriol	10.1128/jb.01513-10	2011
Pathogenicity	Contact-dependent growth inhibition (CDI) systems deploy a large family of polymorphic ionophoric toxins for inter-bacterial competition.	Halvorsen TM, Schroeder KA, Jones AM, Hammarlof D, Low DA, Koskiniemi S, Hayes CS.	PLoS Genet	10.1371/journal.pgen.1011494	2024
	Noncontiguous operon atlas for the Staphylococcus aureus genome.	Iturbe P, Martin AS, Hamamoto H, Marcet-Houben M, Galbaldon T, Solano C, Lasa I.	Microlife	10.1093/femsml/uqae007	2024
Metabolism	A feed-forward signalling circuit controls bacterial virulence through linking cyclic di-GMP and two mechanistically distinct sRNAs, ArcZ and RsmB.	Yuan X, Zeng Q, Khokhani D, Tian F, Severin GB, Waters CM, Xu J, Zhou X, Sundin GW, Ibekwe AM, Liu F, Yang CH.	Environ Microbiol	10.1111/1462-2920.14603	2019
	Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.	Ferrarini MG, Vallier A, Vincent-Monegat C, Dell'Aglio E, Gillet B, Hughes S, Hurtado O, Condemine G, Zaidman-Remy A, Rebollo R, Parisot N, Heddi A.	Microbiome	10.1186/s40168-023-01714-8	2023
Pathogenicity	Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning.	Ma B, Charkowski AO, Glasner JD, Perna NT.	BMC Genomics	10.1186/1471-2164-15-508	2014
Biotechnology	Divergent Biosynthesis of C-Nucleoside Minimycin and Indigoidine in Bacteria.	Kong L, Xu G, Liu X, Wang J, Tang Z, Cai YS, Shen K, Tao W, Zheng Y, Deng Z, Price NPJ, Chen W.	iScience	10.1016/j.isci.2019.11.037	2019
	Differential effect of supercoiling on bacterial transcription in topological domains.	Goldberg B, Yehya N, Xiao J, Meyer S.	PLoS Comput Biol	10.1371/journal.pcbi.1012764	2025
	Assessment of Black Rot in Oilseed Rape Grown under Climate Change Conditions Using Biochemical Methods and Computer Vision.	Pineda M, Baron M.	Plants (Basel)	10.3390/plants12061322	2023
	First Report of Filamentous Phages Isolated from Tunisian Orchards to Control Erwinia amylovora.	Akremi I, Holtappels D, Brabra W, Jlidi M, Hadj Ibrahim A, Ben Ali M, Fortuna K, Ahmed M, Meerbeek BV, Rhouma A, Lavigne R, Ben Ali M, Wagemans J.	Microorganisms	10.3390/microorganisms8111762	2020
Metabolism	Derivative of plant phenolic compound inhibits the type III secretion system of Dickeya dadantii via HrpX/HrpY two-component signal transduction and Rsm systems.	Li Y, Hutchins W, Wu X, Liang C, Zhang C, Yuan X, Khokhani D, Chen X, Che Y, Wang Q, Yang CH.	Mol Plant Pathol	10.1111/mpp.12168	2015
	The dimeric form of bacterial l-asparaginase YpAI is fully active.	Strzelczyk P, Zhang D, Alexandratos J, Piszczek G, Wlodawer A, Lubkowski J.	FEBS J	10.1111/febs.16635	2023
Metabolism	Dynamic regulation of GacA in type III secretion, pectinase gene expression, pellicle formation, and pathogenicity of Dickeya dadantii (Erwinia chrysanthemi 3937).	Yang S, Peng Q, Zhang Q, Yi X, Choi CJ, Reedy RM, Charkowski AO, Yang CH.	Mol Plant Microbe Interact	10.1094/mpmi-21-1-0133	2008
	Structure-Functional Characteristics of the Svx Protein-The Virulence Factor of the Phytopathogenic Bacterium Pectobacterium atrosepticum.	Tendiuk N, Konnova T, Petrova O, Osipova E, Mukhametzyanov T, Makshakova O, Gorshkov V.	Int J Mol Sci	10.3390/ijms23136914	2022
	The secretome of Thermococcus barophilus in the presence of carbohydrates and the potential role of the TrmBL4 regulator.	Batour M, Laurent S, Moalic Y, Chamieh H, Taha S, Jebbar M.	Environ Microbiol Rep	10.1111/1758-2229.13186	2023
Metabolism	Novel mechanism of outer membrane targeting of proteins in Gram-negative bacteria.	Ferrandez Y, Condemine G.	Mol Microbiol	10.1111/j.1365-2958.2008.06366.x	2008
	In planta transcriptomics reveals conflicts between pattern-triggered immunity and the AlgU sigma factor regulon.	Wang H, Smith A, Lovelace A, Kvitko BH.	PLoS One	10.1371/journal.pone.0274009	2022
	Proteomics Analysis Reveals Bacterial Antibiotics Resistance Mechanism Mediated by ahslyA Against Enoxacin in Aeromonas hydrophila.	Li Z, Zhang L, Song Q, Wang G, Yang W, Tang H, Srinivasan R, Lin L, Lin X.	Front Microbiol	10.3389/fmicb.2021.699415	2021
	Legionella pneumophila IrsA, a novel, iron-regulated exoprotein that facilitates growth in low-iron conditions and modulates biofilm formation.	Lopez AE, Mayoral J, Zheng H, Cianciotto NP.	Microbiol Spectr	10.1128/spectrum.02313-24	2025
Metabolism	A new way out: protein localization on the bacterial cell surface via Tat and a novel Type II secretion system.	Coulthurst SJ, Palmer T.	Mol Microbiol	10.1111/j.1365-2958.2008.06367.x	2008
Pathogenicity	A novel double-ribonuclease toxin-antitoxin system linked to the stress response and survival of Acidovorax citrulli.	Wang X, Kan Y, Bai K, Xu X, Chen X, Yu C, Shi J, Jiang N, Li J, Luo L.	Microbiol Spectr	10.1128/spectrum.02169-23	2023
	Non-pathogenic Escherichia coli Enhance Stx2a Production of E. coli O157:H7 Through Both bamA-Dependent and Independent Mechanisms.	Xiaoli L, Figler HM, Goswami Banerjee K, Hayes CS, Dudley EG.	Front Microbiol	10.3389/fmicb.2018.01325	2018
	A Plasmid-Transposon Hybrid Mutagenesis System Effective in a Broad Range of Enterobacteria.	Monson R, Smith DS, Matilla MA, Roberts K, Richardson E, Drew A, Williamson N, Ramsay J, Welch M, Salmond GP.	Front Microbiol	10.3389/fmicb.2015.01442	2015
	Analysis of the LacI family regulators of Erwinia chrysanthemi 3937, involvement in the bacterial phytopathogenicity.	Van Gijsegem F, Wlodarczyk A, Cornu A, Reverchon S, Hugouvieux-Cotte-Pattat N.	Mol Plant Microbe Interact	10.1094/mpmi-21-11-1471	2008
	Bacteriocin Production Correlates with Epidemiological Prevalence of Phylotype I Sequevar 18 Ralstonia pseudosolanacearum in Madagascar.	Rasoamanana H, Ravelomanantsoa S, Nomenjanahary MV, Gauche MM, Prior P, Guerin F, Robene I, Pecrix Y, Poussier S.	Appl Environ Microbiol	10.1128/aem.01632-22	2023
	Identification of enzymatic functions of osmo-regulated periplasmic glucan biosynthesis proteins from Escherichia coli reveals a novel glycoside hydrolase family.	Motouchi S, Kobayashi K, Nakai H, Nakajima M.	Commun Biol	10.1038/s42003-023-05336-6	2023
	Facile Green Synthesis of Titanium Dioxide Nanoparticles by Upcycling Mangosteen (Garcinia mangostana) Pericarp Extract.	Ahn EY, Shin SW, Kim K, Park Y.	Nanoscale Res Lett	10.1186/s11671-022-03678-4	2022
Enzymology	RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.	Zhang D, Czapinska H, Bochtler M, Wlodawer A, Lubkowski J.	Protein Sci	10.1002/pro.4920	2024
	Characterization of the Arn lipopolysaccharide modification system essential for zeamine resistance unveils its new roles in Dickeya oryzae physiology and virulence.	Liang Z, Huang L, Liu H, Zheng Y, Feng J, Shi Z, Chen Y, Lv M, Zhou J, Zhang LH, Chen S.	Mol Plant Pathol	10.1111/mpp.13386	2023
	RpoN is required for the motility and contributes to the killing ability of Plesiomonas shigelloides.	Yan J, Guo X, Li J, Li Y, Sun H, Li A, Cao B.	BMC Microbiol	10.1186/s12866-022-02722-8	2022
	Quantitative contribution of the spacer length in the supercoiling-sensitivity of bacterial promoters.	Forquet R, Nasser W, Reverchon S, Meyer S.	Nucleic Acids Res	10.1093/nar/gkac579	2022
	Priority Effects in the Apple Flower Determine If the Siderophore Desferrioxamine Is a Virulence Factor for Erwinia amylovora CFBP1430.	Muller L, Muller DC, Kammerecker S, Fluri M, Neutsch L, Remus Emsermann M, Pelludat C.	Appl Environ Microbiol	10.1128/aem.02433-21	2022
Metabolism	l-Rhamnose Metabolism in Clostridium beijerinckii Strain DSM 6423.	Diallo M, Simons AD, van der Wal H, Collas F, Houweling-Tan B, Kengen SWM, Lopez-Contreras AM.	Appl Environ Microbiol	10.1128/aem.02656-18	2019
	Crystal structure of the feruloyl esterase from Lentilactobacillus buchneri reveals a novel homodimeric state.	Kasmaei KM, Kalyani DC, Reichenbach T, Jimenez-Quero A, Vilaplana F, Divne C.	Front Microbiol	10.3389/fmicb.2022.1050160	2022
	Genetic and Environmental Investigation of a Novel Phenylamino Acetamide Inhibitor of the Pseudomonas aeruginosa Type III Secretion System.	Fang L, Banerjee B, Yuan X, Zeng Q, Liang C, Chen X, Yang CH.	Appl Environ Microbiol	10.1128/aem.01752-22	2023
Phylogeny	Dickeya species relatedness and clade structure determined by comparison of recA sequences.	Parkinson N, Stead D, Bew J, Heeney J, Tsror Lahkim L, Elphinstone J.	Int J Syst Evol Microbiol	10.1099/ijs.0.009258-0	2009
	Genomic analysis of bacteria in the Acute Oak Decline pathobiome.	Doonan J, Denman S, Pachebat JA, McDonald JE.	Microb Genom	10.1099/mgen.0.000240	2019
	Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets.	Canario Viana MV, Profeta R, Cerqueira JC, Wattam AR, Barh D, Silva A, Azevedo V.	PeerJ	10.7717/peerj.12662	2022
	Genome sequence of Epibacterium ulvae strain DSM 24752^T, an indigoidine-producing, macroalga-associated member of the marine Roseobacter group.	Breider S, Sehar S, Berger M, Thomas T, Brinkhoff T, Egan S.	Environ Microbiome	10.1186/s40793-019-0343-5	2019
Enzymology	Evaluation of isolation methods and RNA integrity for bacterial RNA quantitation.	Jahn CE, Charkowski AO, Willis DK.	J Microbiol Methods	10.1016/j.mimet.2008.07.004	2008
	Nanomaterials-plants-microbes interaction: plant growth promotion and stress mitigation.	Sodhi GK, Wijesekara T, Kumawat KC, Adhikari P, Joshi K, Singh S, Farda B, Djebaili R, Sabbi E, Ramila F, Sillu D, Santoyo G, de Los Santos-Villalobos S, Kumar A, Pellegrini M, Mitra D.	Front Microbiol	10.3389/fmicb.2024.1516794	2024
	Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms.	Henao L, Zade RSH, Restrepo S, Husserl J, Abeel T.	BMC Genomics	10.1186/s12864-023-09190-y	2023
Metabolism	Expanding Role of Type II Secretion in Bacterial Pathogenesis and Beyond.	Cianciotto NP, White RC.	Infect Immun	10.1128/iai.00014-17	2017
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Metabolism	Fe²⁺ Ions Alleviate the Symptom of Citrus Greening Disease.	Inoue H, Yamashita-Muraki S, Fujiwara K, Honda K, Ono H, Nonaka T, Kato Y, Matsuyama T, Sugano S, Suzuki M, Masaoka Y.	Int J Mol Sci	10.3390/ijms21114033	2020
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Metabolism	A Substrate-Activated Efflux Pump, DesABC, Confers Zeamine Resistance to Dickeya zeae.	Liang Z, Huang L, He F, Zhou X, Shi Z, Zhou J, Chen Y, Lv M, Chen Y, Zhang LH.	mBio	10.1128/mbio.00713-19	2019
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Enzymology	The Multiple Regulatory Relationship Between RNA-Chaperone Hfq and the Second Messenger c-di-GMP.	Fu Y, Yu Z, Zhu L, Li Z, Yin W, Shang X, Chou SH, Tan Q, He J.	Front Microbiol	10.3389/fmicb.2021.689619	2021
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Pathogenicity	How Does the Sweet Violet (Viola odorata L.) Fight Pathogens and Pests - Cyclotides as a Comprehensive Plant Host Defense System.	Slazak B, Kapusta M, Stromstedt AA, Slomka A, Krychowiak M, Shariatgorji M, Andren PE, Bohdanowicz J, Kuta E, Goransson U.	Front Plant Sci	10.3389/fpls.2018.01296	2018
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Genetics	Comprehensive genomic analysis of Bacillus paralicheniformis strain BP9, pan-genomic and genetic basis of biocontrol mechanism.	Asif M, Li-Qun Z, Zeng Q, Atiq M, Ahmad K, Tariq A, Al-Ansari N, Blom J, Fenske L, Alodaini HA, Hatamleh AA.	Comput Struct Biotechnol J	10.1016/j.csbj.2023.09.043	2023
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Metabolism	SlyA regulates type III secretion system (T3SS) genes in parallel with the T3SS master regulator HrpL in Dickeya dadantii 3937.	Zou L, Zeng Q, Lin H, Gyaneshwar P, Chen G, Yang CH.	Appl Environ Microbiol	10.1128/aem.07021-11	2012
Phylogeny	Effect of soil chemical fertilization on the diversity and composition of the tomato endophytic diazotrophic community at different stages of growth.	Collavino MM, Cabrera EVR, Bruno C, Aguilar OM.	Braz J Microbiol	10.1007/s42770-020-00373-3	2020
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	Improvement of Biocatalytic Properties and Cytotoxic Activity of L-Asparaginase from Rhodospirillum rubrum by Conjugation with Chitosan-Based Cationic Polyelectrolytes.	Dobryakova NV, Zhdanov DD, Sokolov NN, Aleksandrova SS, Pokrovskaya MV, Kudryashova EV.	Pharmaceuticals (Basel)	10.3390/ph15040406	2022
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	Gene expression and phytohormone levels in the asymptomatic and symptomatic phases of infection in potato tubers inoculated with Dickeya solani.	Hadizadeh I, Peivastegan B, Wang J, Sipari N, Nielsen KL, Pirhonen M.	PLoS One	10.1371/journal.pone.0273481	2022
Metabolism	Role of Dickeya dadantii 3937 chemoreceptors in the entry to Arabidopsis leaves through wounds.	Rio-Alvarez I, Munoz-Gomez C, Navas-Vasquez M, Martinez-Garcia PM, Antunez-Lamas M, Rodriguez-Palenzuela P, Lopez-Solanilla E.	Mol Plant Pathol	10.1111/mpp.12227	2015
	Global Regulator PhoP is Necessary for Motility, Biofilm Formation, Exoenzyme Production and Virulence of Xanthomonas citri Subsp. citri on Citrus Plants.	Wei C, Ding T, Chang C, Yu C, Li X, Liu Q.	Genes (Basel)	10.3390/genes10050340	2019
	Cross-talk between a regulatory small RNA, cyclic-di-GMP signalling and flagellar regulator FlhDC for virulence and bacterial behaviours.	Yuan X, Khokhani D, Wu X, Yang F, Biener G, Koestler BJ, Raicu V, He C, Waters CM, Sundin GW, Tian F, Yang CH.	Environ Microbiol	10.1111/1462-2920.13029	2015
	Inhibitory Activity of Sedum middendorffianum-Derived 4-Hydroxybenzoic Acid and Vanillic Acid on the Type III Secretion System of Pseudomonas syringae pv. tomato DC3000.	Kang JE, Jeon BJ, Park MY, Kim BS.	Plant Pathol J	10.5423/ppj.oa.08.2020.0162	2020
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	Quorum Sensing Inhibitory and Quenching Activity of Bacillus cereus RC1 Extracts on Soft Rot-Causing Bacteria Lelliottia amnigena.	Kachhadia R, Kapadia C, Singh S, Gandhi K, Jajda H, Alfarraj S, Ansari MJ, Danish S, Datta R.	ACS Omega	10.1021/acsomega.2c02202	2022
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Transcriptome	Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.).	Shu X, Wang A, Jiang B, Jiang Y, Xiang X, Yi X, Li S, Deng Q, Wang S, Zhu J, Liang Y, Liu H, Zou T, Wang L, Li P, Zheng A.	BMC Plant Biol	10.1186/s12870-021-03041-2	2021
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Genetics	Genome-wide identification of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937.	Yang S, Peng Q, Zhang Q, Zou L, Li Y, Robert C, Pritchard L, Liu H, Hovey R, Wang Q, Birch P, Toth IK, Yang CH.	PLoS One	10.1371/journal.pone.0013472	2010
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Metabolism	Elucidating Functions of FleQ in Xanthomonas oryzae pv. oryzae by Comparative Proteomic and Phenotypic Analyses.	Bae N, Park HJ, Park H, Kim M, Do E, Han SW.	Int J Mol Sci	10.3390/ijms19103038	2018
Enzymology	Commensal effect of pectate lyases secreted from Dickeya dadantii on proliferation of Escherichia coli O157:H7 EDL933 on lettuce leaves.	Yamazaki A, Li J, Hutchins WC, Wang L, Ma J, Ibekwe AM, Yang CH.	Appl Environ Microbiol	10.1128/aem.01079-10	2011
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Metabolism	Identification of two feruloyl esterases in Dickeya dadantii 3937 and induction of the major feruloyl esterase and of pectate lyases by ferulic acid.	Hassan S, Hugouvieux-Cotte-Pattat N.	J Bacteriol	10.1128/jb.01239-10	2011
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	Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion.	Guilvout I, Samsudin F, Huber RG, Bond PJ, Bardiaux B, Francetic O.	mBio	10.1128/mbio.01423-23	2024
Metabolism	Pseudomonas fluorescens SBW25 produces furanomycin, a non-proteinogenic amino acid with selective antimicrobial properties.	Trippe K, McPhail K, Armstrong D, Azevedo M, Banowetz G.	BMC Microbiol	10.1186/1471-2180-13-111	2013
Metabolism	Dickeya dadantii, a plant pathogenic bacterium producing Cyt-like entomotoxins, causes septicemia in the pea aphid Acyrthosiphon pisum.	Costechareyre D, Balmand S, Condemine G, Rahbe Y.	PLoS One	10.1371/journal.pone.0030702	2012
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Metabolism	The Absence of Osmoregulated Periplasmic Glucan Confers Antimicrobial Resistance and Increases Virulence in Escherichia coli.	Murakami K, Nasu H, Fujiwara T, Takatsu N, Yoshida N, Furuta K, Kaito C.	J Bacteriol	10.1128/jb.00515-20	2021
Pathogenicity	Plant susceptible responses: the underestimated side of plant-pathogen interactions.	Gorshkov V, Tsers I.	Biol Rev Camb Philos Soc	10.1111/brv.12789	2022
Pathogenicity	Type III secretion system genes of Dickeya dadantii 3937 are induced by plant phenolic acids.	Yang S, Peng Q, San Francisco M, Wang Y, Zeng Q, Yang CH.	PLoS One	10.1371/journal.pone.0002973	2008
	The RNA-Binding Protein ProQ Impacts Exopolysaccharide Biosynthesis and Second Messenger Cyclic di-GMP Signaling in the Fire Blight Pathogen Erwinia amylovora.	Yuan X, Eldred LI, Kharadi RR, Slack SM, Sundin GW.	Appl Environ Microbiol	10.1128/aem.00239-22	2022
Phylogeny	Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates.	Alic S, Pedron J, Dreo T, Van Gijsegem F.	BMC Genomics	10.1186/s12864-018-5332-3	2019
	Grass xylan structural variation suggests functional specialization and distinctive interaction with cellulose and lignin.	Tryfona T, Bourdon M, Delgado Marques R, Busse-Wicher M, Vilaplana F, Stott K, Dupree P.	Plant J	10.1111/tpj.16096	2023
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Genetics	Metagenomic Analysis of the Gut Microbiome of the Common Black Slug Arion ater in Search of Novel Lignocellulose Degrading Enzymes.	Joynson R, Pritchard L, Osemwekha E, Ferry N.	Front Microbiol	10.3389/fmicb.2017.02181	2017
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Metabolism	The virulence of a Dickeya dadantii 3937 mutant devoid of osmoregulated periplasmic glucans is restored by inactivation of the RcsCD-RcsB phosphorelay.	Bouchart F, Boussemart G, Prouvost AF, Cogez V, Madec E, Vidal O, Delrue B, Bohin JP, Lacroix JM.	J Bacteriol	10.1128/jb.00143-10	2010
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	Transcriptome of Dickeya dadantii infecting Acyrthosiphon pisum reveals a strong defense against antimicrobial peptides.	Costechareyre D, Chich JF, Strub JM, Rahbe Y, Condemine G.	PLoS One	10.1371/journal.pone.0054118	2013
	Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species.	Helmann TC, Deutschbauer AM, Lindow SE.	PLoS One	10.1371/journal.pone.0239998	2020
	RNA Interference for Improving Disease Resistance in Plants and Its Relevance in This Clustered Regularly Interspaced Short Palindromic Repeats-Dominated Era in Terms of dsRNA-Based Biopesticides.	Halder K, Chaudhuri A, Abdin MZ, Majee M, Datta A.	Front Plant Sci	10.3389/fpls.2022.885128	2022
Pathogenicity	The plant phenolic compound p-coumaric acid represses gene expression in the Dickeya dadantii type III secretion system.	Li Y, Peng Q, Selimi D, Wang Q, Charkowski AO, Chen X, Yang CH.	Appl Environ Microbiol	10.1128/aem.02015-08	2009
Enzymology	The Periplasmic Oxidoreductase DsbA Is Required for Virulence of the Phytopathogen Dickeya solani.	Przepiora T, Figaj D, Bogucka A, Fikowicz-Krosko J, Czajkowski R, Hugouvieux-Cotte-Pattat N, Skorko-Glonek J.	Int J Mol Sci	10.3390/ijms23020697	2022
Metabolism	A secreted metal-binding protein protects necrotrophic phytopathogens from reactive oxygen species.	Liu L, Gueguen-Chaignon V, Goncalves IR, Rascle C, Rigault M, Dellagi A, Loisel E, Poussereau N, Rodrigue A, Terradot L, Condemine G.	Nat Commun	10.1038/s41467-019-12826-x	2019
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	The rice foot rot pathogen Dickeya zeae alters the in-field plant microbiome.	Bez C, Esposito A, Thuy HD, Nguyen Hong M, Vale G, Licastro D, Bertani I, Piazza S, Venturi V.	Environ Microbiol	10.1111/1462-2920.15726	2021
Metabolism	The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii.	Ouafa ZA, Reverchon S, Lautier T, Muskhelishvili G, Nasser W.	Nucleic Acids Res	10.1093/nar/gks014	2012
Pathogenicity	Host-microbiota-insect interactions drive emergent virulence in a complex tree disease.	Doonan JM, Broberg M, Denman S, McDonald JE.	Proc Biol Sci	10.1098/rspb.2020.0956	2020
	Systemic infection generates a local-like immune response of the bacteriome organ in insect symbiosis.	Masson F, Vallier A, Vigneron A, Balmand S, Vincent-Monegat C, Zaidman-Remy A, Heddi A.	J Innate Immun	10.1159/000368928	2015
	Differential Genetic Strategies of Burkholderia vietnamiensis and Paraburkholderia kururiensis for Root Colonization of Oryza sativa subsp. japonica and O. sativa subsp. indica, as Revealed by Transposon Mutagenesis Sequencing.	Wallner A, Busset N, Lachat J, Guigard L, King E, Rimbault I, Mergaert P, Bena G, Moulin L.	Appl Environ Microbiol	10.1128/aem.00642-22	2022
Metabolism	PelN is a new pectate lyase of Dickeya dadantii with unusual characteristics.	Hassan S, Shevchik VE, Robert X, Hugouvieux-Cotte-Pattat N.	J Bacteriol	10.1128/jb.02118-12	2013
	Engineering a Culturable Serratia symbiotica Strain for Aphid Paratransgenesis.	Elston KM, Perreau J, Maeda GP, Moran NA, Barrick JE.	Appl Environ Microbiol	10.1128/aem.02245-20	2021
Metabolism	Role of iron homeostasis in the virulence of phytopathogenic bacteria: an 'à la carte' menu.	Franza T, Expert D.	Mol Plant Pathol	10.1111/mpp.12007	2013
Genetics	Genome sequence of the entomopathogenic Serratia entomophila isolate 626 and characterisation of the species specific itaconate degradation pathway.	Vaughan AL, Altermann E, Glare TR, Hurst MRH.	BMC Genomics	10.1186/s12864-022-08938-2	2022
Metabolism	N-acyl homoserine lactones in diverse Pectobacterium and Dickeya plant pathogens: diversity, abundance, and involvement in virulence.	Crepin A, Beury-Cirou A, Barbey C, Farmer C, Helias V, Burini JF, Faure D, Latour X.	Sensors (Basel)	10.3390/s120303484	2012
Metabolism	Structural and functional insights into the pilotin-secretin complex of the type II secretion system.	Gu S, Rehman S, Wang X, Shevchik VE, Pickersgill RW.	PLoS Pathog	10.1371/journal.ppat.1002531	2012
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	Phosphodiesterase Genes Regulate Amylovoran Production, Biofilm Formation, and Virulence in Erwinia amylovora.	Kharadi RR, Castiblanco LF, Waters CM, Sundin GW.	Appl Environ Microbiol	10.1128/aem.02233-18	2019
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	Bacterial Compound N,N-Dimethylhexadecylamine Modulates Expression of Iron Deficiency and Defense Response Genes in Medicago truncatula Independently of the Jasmonic Acid Pathway.	Montejano-Ramirez V, Garcia-Pineda E, Valencia-Cantero E.	Plants (Basel)	10.3390/plants9050624	2020
Genetics	Exploring K2G30 Genome: A High Bacterial Cellulose Producing Strain in Glucose and Mannitol Based Media.	Gullo M, La China S, Petroni G, Di Gregorio S, Giudici P.	Front Microbiol	10.3389/fmicb.2019.00058	2019
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Metabolism	Production of cecropin A antimicrobial peptide in rice seed endosperm.	Bundo M, Montesinos L, Izquierdo E, Campo S, Mieulet D, Guiderdoni E, Rossignol M, Badosa E, Montesinos E, San Segundo B, Coca M.	BMC Plant Biol	10.1186/1471-2229-14-102	2014
Enzymology	Expression, purification, crystallization and preliminary X-ray diffraction analysis of the pectin methylesterase from the sugar cane weevil Sphenophorus levis.	Evangelista DE, Schutzer de Godoy A, Fonseca Pereira de Paula F, Henrique-Silva F, Polikarpov I.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x14001630	2014
Metabolism	Stand-Alone EAL Domain Proteins Form a Distinct Subclass of EAL Proteins Involved in Regulation of Cell Motility and Biofilm Formation in Enterobacteria.	El Mouali Y, Kim H, Ahmad I, Brauner A, Liu Y, Skurnik M, Galperin MY, Romling U.	J Bacteriol	10.1128/jb.00179-17	2017
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Metabolism	Production of Biologically Active Cecropin A Peptide in Rice Seed Oil Bodies.	Montesinos L, Bundo M, Izquierdo E, Campo S, Badosa E, Rossignol M, Montesinos E, San Segundo B, Coca M.	PLoS One	10.1371/journal.pone.0146919	2016
	Elicitation-Based Method for Increasing the Production of Antioxidant and Bactericidal Phenolic Compounds in Dionaea muscipula J. Ellis Tissue.	Makowski W, Tokarz KM, Tokarz B, Banasiuk R, Witek K, Krolicka A.	Molecules	10.3390/molecules25081794	2020
Metabolism	Delivery of CdiA nuclease toxins into target cells during contact-dependent growth inhibition.	Webb JS, Nikolakakis KC, Willett JL, Aoki SK, Hayes CS, Low DA.	PLoS One	10.1371/journal.pone.0057609	2013
	Genes for degradation and utilization of uronic acid-containing polysaccharides of a marine bacterium Catenovulum sp. CCB-QB4.	Furusawa G, Azami NA, Teh AH.	PeerJ	10.7717/peerj.10929	2021
Metabolism	Bacterial chemotaxis towards polysaccharide pectin by pectin-binding protein.	Konishi H, Hio M, Kobayashi M, Takase R, Hashimoto W.	Sci Rep	10.1038/s41598-020-60274-1	2020
Metabolism	The Role of Proteases in the Virulence of Plant Pathogenic Bacteria.	Figaj D, Ambroziak P, Przepiora T, Skorko-Glonek J.	Int J Mol Sci	10.3390/ijms20030672	2019
	Biological Control of Tomato Bacterial Wilt, Kimchi Cabbage Soft Rot, and Red Pepper Bacterial Leaf Spot Using Paenibacillus elgii JCK-5075.	Le KD, Kim J, Yu NH, Kim B, Lee CW, Kim JC.	Front Plant Sci	10.3389/fpls.2020.00775	2020
Transcriptome	The Perception of Rhizosphere Bacterial Communication Signals Leads to Transcriptome Reprogramming in Lysobacter capsici AZ78, a Plant Beneficial Bacterium.	Bejarano A, Perazzolli M, Pertot I, Puopolo G.	Front Microbiol	10.3389/fmicb.2021.725403	2021
	The Ionomics of Lettuce Infected by Xanthomonas campestris pv. vitians.	Nicolas O, Charles MT, Jenni S, Toussaint V, Parent SE, Beaulieu C.	Front Plant Sci	10.3389/fpls.2019.00351	2019
Metabolism	An improved, versatile and efficient modular plasmid assembly system for expression analyses of genes in Xanthomonas oryzae.	Zou L, Zhang C, Li Y, Yang X, Wang Y, Yan Y, Yang R, Huang M, Haq F, Yang CH, Chen G.	Mol Plant Pathol	10.1111/mpp.13033	2021
Metabolism	A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria.	Aoki SK, Diner EJ, de Roodenbeke CT, Burgess BR, Poole SJ, Braaten BA, Jones AM, Webb JS, Hayes CS, Cotter PA, Low DA.	Nature	10.1038/nature09490	2010
	The Leucine-Responsive Regulatory Protein Lrp Participates in Virulence Regulation Downstream of Small RNA ArcZ in Erwinia amylovora.	Schachterle JK, Sundin GW.	mBio	10.1128/mbio.00757-19	2019
Metabolism	Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase.	Lubkowski J, Wlodawer A.	Protein Sci	10.1002/pro.3709	2019
Genetics	Genome Editing for Plasmodesmal Biology.	Iswanto ABB, Shelake RM, Vu MH, Kim JY, Kim SH.	Front Plant Sci	10.3389/fpls.2021.679140	2021
	Evaluation of the Role of the opgGH Operon in Yersinia pseudotuberculosis and Its Deletion during the Emergence of Yersinia pestis.	Quintard K, Dewitte A, Reboul A, Madec E, Bontemps-Gallo S, Dondeyne J, Marceau M, Simonet M, Lacroix JM, Sebbane F.	Infect Immun	10.1128/iai.00482-15	2015
	Contribution of mechanosensitive channels to osmoadaptation and ectoine excretion in Halomonas elongata.	Vandrich J, Pfeiffer F, Alfaro-Espinoza G, Kunte HJ.	Extremophiles	10.1007/s00792-020-01168-y	2020
Metabolism	Mounting, structure and autocleavage of a type VI secretion-associated Rhs polymorphic toxin.	Jurenas D, Rosa LT, Rey M, Chamot-Rooke J, Fronzes R, Cascales E.	Nat Commun	10.1038/s41467-021-27388-0	2021
Metabolism	Use of Walnut Shell Powder to Inhibit Expression of Fe(2+)-Oxidizing Genes of Acidithiobacillus Ferrooxidans.	Li Y, Liu Y, Tan H, Zhang Y, Yue M.	Int J Environ Res Public Health	10.3390/ijerph13050461	2016
Genetics	Genomic and Phenotypic Biology of Novel Strains of Dickeya zeae Isolated From Pineapple and Taro in Hawaii: Insights Into Genome Plasticity, Pathogenicity, and Virulence Determinants.	Boluk G, Arizala D, Dobhal S, Zhang J, Hu J, Alvarez AM, Arif M.	Front Plant Sci	10.3389/fpls.2021.663851	2021
	Characterization of Pectobacterium carotovorum proteins differentially expressed during infection of Zantedeschia elliotiana in vivo and in vitro which are essential for virulence.	Wang H, Yang Z, Du S, Ma L, Liao Y, Wang Y, Toth I, Fan J.	Mol Plant Pathol	10.1111/mpp.12493	2018
Metabolism	Diverse effects of nitric oxide reductase NorV on Aeromonas hydrophila virulence-associated traits under aerobic and anaerobic conditions.	Liu J, Dong Y, Wang N, Ma S, Lu C, Liu Y.	Vet Res	10.1186/s13567-019-0683-6	2019
	Insight into biodiversity of the recently rearranged genus Dickeya.	Hugouvieux-Cotte-Pattat N, Pedron J, Van Gijsegem F.	Front Plant Sci	10.3389/fpls.2023.1168480	2023
Metabolism	Paenibacillus amylolyticus 27C64 has a diverse set of carbohydrate-active enzymes and complete pectin deconstruction system.	Keggi C, Doran-Peterson J.	J Ind Microbiol Biotechnol	10.1007/s10295-018-2098-1	2019
Metabolism	Blue-light perception by epiphytic Pseudomonas syringae drives chemoreceptor expression, enabling efficient plant infection.	Santamaria-Hernando S, Cerna-Vargas JP, Martinez-Garcia PM, de Francisco-de Polanco S, Nebreda S, Rodriguez-Palenzuela P, Rodriguez-Herva JJ, Lopez-Solanilla E.	Mol Plant Pathol	10.1111/mpp.13001	2020
Metabolism	Identification of Indole-3-Acetic Acid-Regulated Genes in Pseudomonas syringae pv. tomato Strain DC3000.	Djami-Tchatchou AT, Li ZA, Stodghill P, Filiatrault MJ, Kunkel BN.	J Bacteriol	10.1128/jb.00380-21	2022
	Expanding the bio-catalysis scope and applied perspectives of nanocarrier immobilized asparaginases.	Rafeeq H, Hussain A, Tarar MHA, Afsheen N, Bilal M, Iqbal HMN.	3 Biotech	10.1007/s13205-021-02999-y	2021
	Chromosomal "stress-response" domains govern the spatiotemporal expression of the bacterial virulence program.	Jiang X, Sobetzko P, Nasser W, Reverchon S, Muskhelishvili G.	mBio	10.1128/mbio.00353-15	2015
	Evolution of Bacterial Pathogens Within the Human Host.	Bliven KA, Maurelli AT.	Microbiol Spectr	10.1128/microbiolspec.vmbf-0017-2015	2016
Transcriptome	Transcriptional responses of Xanthomonas oryzae pv. oryzae to type III secretion system inhibitor ortho-coumaric acid.	Fan S, Tian F, Fang L, Yang CH, He C.	BMC Microbiol	10.1186/s12866-019-1532-5	2019
Pathogenicity	Extract from Maize (Zea mays L.): Antibacterial Activity of DIMBOA and Its Derivatives against Ralstonia solanacearum.	Guo B, Zhang Y, Li S, Lai T, Yang L, Chen J, Ding W.	Molecules	10.3390/molecules21101397	2016
Metabolism	Differential regulation of two oligogalacturonate outer membrane channels, KdgN and KdgM, of Dickeya dadantii (Erwinia chrysanthemi).	Condemine G, Ghazi A.	J Bacteriol	10.1128/jb.00218-07	2007
	HapX-mediated H2B deub1 and SreA-mediated H2A.Z deposition coordinate in fungal iron resistance.	Sun K, Li Y, Gai Y, Wang J, Jian Y, Liu X, Wu L, Shim WB, Lee YW, Ma Z, Haas H, Yin Y.	Nucleic Acids Res	10.1093/nar/gkad708	2023
	Cyclic di-GMP Regulates the Type III Secretion System and Virulence in Bordetella bronchiseptica.	Gutierrez MP, Wong TY, Damron FH, Fernandez J, Sisti F.	Infect Immun	10.1128/iai.00107-22	2022
	The phytopathogen Dickeya dadantii (Erwinia chrysanthemi 3937) is a pathogen of the pea aphid.	Grenier AM, Duport G, Pages S, Condemine G, Rahbe Y.	Appl Environ Microbiol	10.1128/aem.72.3.1956-1965.2006	2006
	An Extracytoplasmic Function Sigma Factor Required for Full Virulence in Xanthomonas citri pv. citri.	Lima LDP, Pereira JB, Flores AJF, Lorenzetti APR, Boechat AL, Pereda MC, Gualtieri S, do Prado DF, Rocha D, Ceseti LM, Baldini RL, Farah CS, Koide T, Benedetti CE, Alvarez-Martinez CE.	J Bacteriol	10.1128/jb.00624-21	2022
Metabolism	Functional identification of alginate lyase from the brown alga Saccharina japonica.	Inoue A, Ojima T.	Sci Rep	10.1038/s41598-019-41351-6	2019
	The sulfur formation system mediating extracellular cysteine-cystine recycling in Fervidobacterium islandicum AW-1 is associated with keratin degradation.	Jin HS, Dhanasingh I, Sung JY, La JW, Lee Y, Lee EM, Kang Y, Lee DY, Lee SH, Lee DW.	Microb Biotechnol	10.1111/1751-7915.13717	2021
Genetics	Prediction of Host-Specific Genes by Pan-Genome Analyses of the Korean Ralstonia solanacearum Species Complex.	Cho H, Song ES, Heu S, Baek J, Lee YK, Lee S, Lee SW, Park DS, Lee TH, Kim JG, Hwang I.	Front Microbiol	10.3389/fmicb.2019.00506	2019
	Discovery of Ethyl 2-Nitro-3-Arylacrylates Molecules as T3SS Inhibitor Reducing the Virulence of Plant Pathogenic Bacteria Xanthomonas.	Jiang S, Li H, Ahmed W, Xiang X, Song G, Cui ZN.	Front Microbiol	10.3389/fmicb.2019.01874	2019
Metabolism	Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire.	Pedron J, Mondy S, des Essarts YR, Van Gijsegem F, Faure D.	BMC Genomics	10.1186/1471-2164-15-283	2014
	Cyclic-di-GMP Regulates the Quorum-Sensing System and Biocontrol Activity of Pseudomonas fluorescens 2P24 through the RsmA and RsmE Proteins.	Liang F, Zhang B, Yang Q, Zhang Y, Zheng D, Zhang LQ, Yan Q, Wu X.	Appl Environ Microbiol	10.1128/aem.02016-20	2020
	SlyA, a MarR family transcriptional regulator, is essential for virulence in Dickeya dadantii 3937.	Haque MM, Kabir MS, Aini LQ, Hirata H, Tsuyumu S.	J Bacteriol	10.1128/jb.00240-09	2009
Genetics	A Comprehensive Overview of the Genes and Functions Required for Lettuce Infection by the Hemibiotrophic Phytopathogen Xanthomonas hortorum pv. vitians.	Moriniere L, Mirabel L, Gueguen E, Bertolla F.	mSystems	10.1128/msystems.01290-21	2022
Metabolism	Hydroxycinnamic Acid Degradation, a Broadly Conserved Trait, Protects Ralstonia solanacearum from Chemical Plant Defenses and Contributes to Root Colonization and Virulence.	Lowe TM, Ailloud F, Allen C.	Mol Plant Microbe Interact	10.1094/mpmi-09-14-0292-fi	2015
	Exploration of Using Antisense Peptide Nucleic Acid (PNA)-cell Penetrating Peptide (CPP) as a Novel Bactericide against Fire Blight Pathogen Erwinia amylovora.	Patel RR, Sundin GW, Yang CH, Wang J, Huntley RB, Yuan X, Zeng Q.	Front Microbiol	10.3389/fmicb.2017.00687	2017
	Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios.	Gromek SM, Suria AM, Fullmer MS, Garcia JL, Gogarten JP, Nyholm SV, Balunas MJ.	Front Microbiol	10.3389/fmicb.2016.01342	2016
	Autogenous regulation in vivo of the rpmE gene encoding ribosomal protein L31 (bL31), a key component of the protein-protein intersubunit bridge B1b.	Aseev LV, Koledinskaya LS, Boni IV.	RNA	10.1261/rna.074237.119	2020
Metabolism	Production of the antimicrobial secondary metabolite indigoidine contributes to competitive surface colonization by the marine roseobacter Phaeobacter sp. strain Y4I.	Cude WN, Mooney J, Tavanaei AA, Hadden MK, Frank AM, Gulvik CA, May AL, Buchan A.	Appl Environ Microbiol	10.1128/aem.00297-12	2012
	Engineering disease resistant plants through CRISPR-Cas9 technology.	Tyagi S, Kumar R, Kumar V, Won SY, Shukla P.	GM Crops Food	10.1080/21645698.2020.1831729	2021
	Role of the Discriminator Sequence in the Supercoiling Sensitivity of Bacterial Promoters.	Forquet R, Pineau M, Nasser W, Reverchon S, Meyer S.	mSystems	10.1128/msystems.00978-21	2021
	Salmonella enterica Elicits and Is Restricted by Nitric Oxide and Reactive Oxygen Species on Tomato.	Ferelli AMC, Bolten S, Szczesny B, Micallef SA.	Front Microbiol	10.3389/fmicb.2020.00391	2020
Phylogeny	Genomic divergence between Dickeya zeae strain EC2 isolated from rice and previously identified strains, suggests a different rice foot rot strain.	Zhang J, Arif M, Shen H, Hu J, Sun D, Pu X, Yang Q, Lin B.	PLoS One	10.1371/journal.pone.0240908	2020
	Verticillium dahliae CFEM proteins manipulate host immunity and differentially contribute to virulence.	Wang D, Zhang DD, Song J, Li JJ, Wang J, Li R, Klosterman SJ, Kong ZQ, Lin FZ, Dai XF, Subbarao KV, Chen JY.	BMC Biol	10.1186/s12915-022-01254-x	2022
	Top 10 plant pathogenic bacteria in molecular plant pathology.	Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA, Toth I, Salmond G, Foster GD.	Mol Plant Pathol	10.1111/j.1364-3703.2012.00804.x	2012
	Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces.	Han S, Ferelli AMC, Lin SS, Micallef SA.	Heliyon	10.1016/j.heliyon.2020.e04952	2020
Metabolism	The Pseudomonas aeruginosa T6SS-VgrG1b spike is topped by a PAAR protein eliciting DNA damage to bacterial competitors.	Pissaridou P, Allsopp LP, Wettstadt S, Howard SA, Mavridou DAI, Filloux A.	Proc Natl Acad Sci U S A	10.1073/pnas.1814181115	2018
	Role of Recipient Susceptibility Factors During Contact-Dependent Interbacterial Competition.	Lin HH, Filloux A, Lai EM.	Front Microbiol	10.3389/fmicb.2020.603652	2020
Enzymology	Toward a quantitative modeling of the synthesis of the pectate lyases, essential virulence factors in Dickeya dadantii.	Kepseu WD, Sepulchre JA, Reverchon S, Nasser W.	J Biol Chem	10.1074/jbc.m110.114710	2010
Metabolism	A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin.	Nickerson NN, Abby SS, Rocha EP, Chami M, Pugsley AP.	J Bacteriol	10.1128/jb.00798-12	2012
Metabolism	Streptomyces coelicolor encodes a urate-responsive transcriptional regulator with homology to PecS from plant pathogens.	Huang H, Mackel BJ, Grove A.	J Bacteriol	10.1128/jb.00854-13	2013
Transcriptome	The salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine.	Goudeau DM, Parker CT, Zhou Y, Sela S, Kroupitski Y, Brandl MT.	Appl Environ Microbiol	10.1128/aem.02290-12	2013
	Evaluation of INSeq To Identify Genes Essential for Pseudomonas aeruginosa PGPR2 Corn Root Colonization.	Sivakumar R, Ranjani J, Vishnu US, Jayashree S, Lozano GL, Miles J, Broderick NA, Guan C, Gunasekaran P, Handelsman J, Rajendhran J.	G3 (Bethesda)	10.1534/g3.118.200928	2019
Metabolism	A Unique Pool of Compatible Solutes on Rhodopirellula baltica, Member of the Deep-Branching Phylum Planctomycetes.	d'Avo AF, Cunha S, Mingote A, Lamosa P, da Costa MS, Costa J.	PLoS One	10.1371/journal.pone.0068289	2013
Enzymology	The structure of rice weevil pectin methylesterase.	Teller DC, Behnke CA, Pappan K, Shen Z, Reese JC, Reeck GR, Stenkamp RE.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x14020433	2014
	The Tryptophan decarboxylase 1 Gene From Aegilops variabilis No.1 Regulate the Resistance Against Cereal Cyst Nematode by Altering the Downstream Secondary Metabolite Contents Rather Than Auxin Synthesis.	Huang Q, Li L, Zheng M, Chen F, Long H, Deng G, Pan Z, Liang J, Li Q, Yu M, Zhang H.	Front Plant Sci	10.3389/fpls.2018.01297	2018
	Coping with Environmental Eukaryotes; Identification of Pseudomonas syringae Genes during the Interaction with Alternative Hosts or Predators.	Dorati F, Barrett GA, Sanchez-Contreras M, Arseneault T, Jose MS, Studholme DJ, Murillo J, Caballero P, Waterfield NR, Arnold DL, Shaw LJ, Jackson RW.	Microorganisms	10.3390/microorganisms6020032	2018
	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Bundo M, Coca M.	Plant Biotechnol J	10.1111/pbi.12500	2016
Metabolism	Broad-scale redistribution of mRNA abundance and transcriptional machinery in response to growth rate in Salmonella enterica serovar Typhimurium.	Cameron ADS, Dillon SC, Kroger C, Beran L, Dorman CJ.	Microb Genom	10.1099/mgen.0.000127	2017
Enzymology	Structural basis for acyl acceptor specificity in the achromobactin biosynthetic enzyme AcsD.	Schmelz S, Botting CH, Song L, Kadi NF, Challis GL, Naismith JH.	J Mol Biol	10.1016/j.jmb.2011.07.059	2011
	Polymorphism of CRISPR shows separated natural groupings of Shigella subtypes and evidence of horizontal transfer of CRISPR.	Yang C, Li P, Su W, Li H, Liu H, Yang G, Xie J, Yi S, Wang J, Cui X, Wu Z, Wang L, Hao R, Jia L, Qiu S, Song H.	RNA Biol	10.1080/15476286.2015.1085150	2015
	Application of Transposon Insertion Sequencing to Agricultural Science.	Fabian BK, Tetu SG, Paulsen IT.	Front Plant Sci	10.3389/fpls.2020.00291	2020
	Chemotaxis of the Human Pathogen Pseudomonas aeruginosa to the Neurotransmitter Acetylcholine.	Matilla MA, Velando F, Tajuelo A, Martin-Mora D, Xu W, Sourjik V, Gavira JA, Krell T.	mBio	10.1128/mbio.03458-21	2022
	Genome-Wide Identification of Ralstonia solanacearum Genes Required for Survival in Tomato Plants.	Su Y, Xu Y, Liang H, Yuan G, Wu X, Zheng D.	mSystems	10.1128/msystems.00838-21	2021
Pathogenicity	Entomopathogenicity to Two Hemipteran Insects Is Common but Variable across Epiphytic Pseudomonas syringae Strains.	Smee MR, Baltrus DA, Hendry TA.	Front Plant Sci	10.3389/fpls.2017.02149	2017
Metabolism	Intramolecular chaperone-mediated secretion of an Rhs effector toxin by a type VI secretion system.	Pei TT, Li H, Liang X, Wang ZH, Liu G, Wu LL, Kim H, Xie Z, Yu M, Lin S, Xu P, Dong TG.	Nat Commun	10.1038/s41467-020-15774-z	2020
Metabolism	MarR homologs with urate-binding signature.	Perera IC, Grove A.	Protein Sci	10.1002/pro.588	2011
	A novel family of toxin/antitoxin proteins in Bacillus species.	Holberger LE, Garza-Sanchez F, Lamoureux J, Low DA, Hayes CS.	FEBS Lett	10.1016/j.febslet.2011.12.020	2012
Metabolism	Catabolism of raffinose, sucrose, and melibiose in Erwinia chrysanthemi 3937.	Hugouvieux-Cotte-Pattat N, Charaoui-Boukerzaza S.	J Bacteriol	10.1128/jb.00594-09	2009
Metabolism	Assembly of the type II secretion system such as found in Vibrio cholerae depends on the novel Pilotin AspS.	Dunstan RA, Heinz E, Wijeyewickrema LC, Pike RN, Purcell AW, Evans TJ, Praszkier J, Robins-Browne RM, Strugnell RA, Korotkov KV, Lithgow T.	PLoS Pathog	10.1371/journal.ppat.1003117	2013
Metabolism	Three feruloyl esterases in Cellulosilyticum ruminicola H1 act synergistically to hydrolyze esterified polysaccharides.	Li J, Cai S, Luo Y, Dong X.	Appl Environ Microbiol	10.1128/aem.00657-11	2011
	Transcriptome Profiling Reveals the EanI/R Quorum Sensing Regulon in Pantoea Ananatis LMG 2665^T.	Sibanda S, Kwenda S, Tanui CK, Shyntum DY, Coutinho TA, Moleleki LN.	Genes (Basel)	10.3390/genes9030148	2018
Transcriptome	Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909).	Babujee L, Balakrishnan V, Kiley PJ, Glasner JD, Perna NT.	PLoS One	10.1371/journal.pone.0076567	2013
Pathogenicity	The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions.	Torto-Alalibo T, Collmer CW, Gwinn-Giglio M.	BMC Microbiol	10.1186/1471-2180-9-s1-s1	2009
	Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.	Wisniewski-Dye F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, Boyer M, Siguier P, Dessaux Y, Elmerich C, Condemine G, Krishnen G, Kennedy I, Paterson AH, Gonzalez V, Mavingui P, Zhulin IB.	PLoS Genet	10.1371/journal.pgen.1002430	2011
	Bridging Chromosomal Architecture and Pathophysiology of Streptococcus pneumoniae.	Martin-Galiano AJ, Ferrandiz MJ, de la Campa AG.	Genome Biol Evol	10.1093/gbe/evw299	2017
	Burkholderia cepacia Complex Contact-Dependent Growth Inhibition Systems Mediate Interbacterial Competition.	Myers-Morales T, Oates AE, Byrd MS, Garcia EC.	J Bacteriol	10.1128/jb.00012-19	2019
Metabolism	Secretome analysis of Vibrio cholerae type VI secretion system reveals a new effector-immunity pair.	Altindis E, Dong T, Catalano C, Mekalanos J.	mBio	10.1128/mbio.00075-15	2015
	Chemical Targeting and Manipulation of Type III Secretion in the Phytopathogen Xanthomonas campestris for Control of Disease.	Zhou L, Wang C, Wang GH, Wei ZW, Fu QX, Hang XH, Yang M, Jiang BL, Tang JL.	Appl Environ Microbiol	10.1128/aem.02349-19	2020
	Salmonella enterica Serovar Typhimurium 14028s Genomic Regions Required for Colonization of Lettuce Leaves.	Montano J, Rossidivito G, Torreano J, Porwollik S, Sela Saldinger S, McClelland M, Melotto M.	Front Microbiol	10.3389/fmicb.2020.00006	2020
Enzymology	Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil.	Ramos PI, Picao RC, Vespero EC, Pelisson M, Zuleta LF, Almeida LG, Gerber AL, Vasconcelos AT, Gales AC, Nicolas MF.	BMC Microbiol	10.1186/1471-2180-12-173	2012
	Asparagine Synthetase in Cancer: Beyond Acute Lymphoblastic Leukemia.	Chiu M, Taurino G, Bianchi MG, Kilberg MS, Bussolati O.	Front Oncol	10.3389/fonc.2019.01480	2019
Metabolism	D-alanine modification of a protease-susceptible outer membrane component by the Bordetella pertussis dra locus promotes resistance to antimicrobial peptides and polymorphonuclear leukocyte-mediated killing.	Taneja NK, Ganguly T, Bakaletz LO, Nelson KJ, Dubey P, Poole LB, Deora R.	J Bacteriol	10.1128/jb.00510-13	2013
	Colonisation of Oncidium orchid roots by the endophyte Piriformospora indica restricts Erwinia chrysanthemi infection, stimulates accumulation of NBS-LRR resistance gene transcripts and represses their targeting micro-RNAs in leaves.	Ye W, Jiang J, Lin Y, Yeh KW, Lai Z, Xu X, Oelmuller R.	BMC Plant Biol	10.1186/s12870-019-2105-3	2019
Phylogeny	Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi.	Goncalves IR, Brouillet S, Soulie MC, Gribaldo S, Sirven C, Charron N, Boccara M, Choquer M.	BMC Evol Biol	10.1186/s12862-016-0815-9	2016
	Past and Future of Plant Stress Detection: An Overview From Remote Sensing to Positron Emission Tomography.	Galieni A, D'Ascenzo N, Stagnari F, Pagnani G, Xie Q, Pisante M.	Front Plant Sci	10.3389/fpls.2020.609155	2020
	Exposure to Umbelliferone Reduces Ralstonia solanacearum Biofilm Formation, Transcription of Type III Secretion System Regulators and Effectors and Virulence on Tobacco.	Yang L, Li S, Qin X, Jiang G, Chen J, Li B, Yao X, Liang P, Zhang Y, Ding W.	Front Microbiol	10.3389/fmicb.2017.01234	2017
	Identification of functional toxin/immunity genes linked to contact-dependent growth inhibition (CDI) and rearrangement hotspot (Rhs) systems.	Poole SJ, Diner EJ, Aoki SK, Braaten BA, t'Kint de Roodenbeke C, Low DA, Hayes CS.	PLoS Genet	10.1371/journal.pgen.1002217	2011
	The Protein-Protein Interaction Network Reveals a Novel Role of the Signal Transduction Protein PII in the Control of c-di-GMP Homeostasis in Azospirillum brasilense.	Gerhardt ECM, Parize E, Gravina F, Pontes FLD, Santos ARS, Araujo GAT, Goedert AC, Urbanski AH, Steffens MBR, Chubatsu LS, Pedrosa FO, Souza EM, Forchhammer K, Ganusova E, Alexandre G, de Souza GA, Huergo LF.	mSystems	10.1128/msystems.00817-20	2020
Metabolism	Visualization and characterization of Pseudomonas syringae pv. tomato DC3000 pellicles.	Farias GA, Olmedilla A, Gallegos MT.	Microb Biotechnol	10.1111/1751-7915.13385	2019
Pathogenicity	Knots Untie: Molecular Determinants Involved in Knot Formation Induced by Pseudomonas savastanoi in Woody Hosts.	Caballo-Ponce E, Murillo J, Martinez-Gil M, Moreno-Perez A, Pintado A, Ramos C.	Front Plant Sci	10.3389/fpls.2017.01089	2017
	PECTOPLATE: the simultaneous phenotyping of pectin methylesterases, pectinases, and oligogalacturonides in plants during biotic stresses.	Lionetti V.	Front Plant Sci	10.3389/fpls.2015.00331	2015
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	Structural basis for allosteric transitions of a multidomain pentameric ligand-gated ion channel.	Hu H, Howard RJ, Bastolla U, Lindahl E, Delarue M.	Proc Natl Acad Sci U S A	10.1073/pnas.1922701117	2020
Metabolism	Amino acids as wetting agents: surface translocation by Porphyromonas gingivalis.	Moradali MF, Ghods S, Angelini TE, Davey ME.	ISME J	10.1038/s41396-019-0360-9	2019
Genetics	Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes.	Wang Y, Youssef NH, Couger MB, Hanafy RA, Elshahed MS, Stajich JE.	mSystems	10.1128/msystems.00247-19	2019
Genetics	Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments.	Shyntum DY, Venter SN, Moleleki LN, Toth I, Coutinho TA.	BMC Genomics	10.1186/1471-2164-15-163	2014
Metabolism	The yrpAB operon of Yersinia ruckeri encoding two putative U32 peptidases is involved in virulence and induced under microaerobic conditions.	Navais R, Mendez J, Perez-Pascual D, Cascales D, Guijarro JA.	Virulence	10.4161/viru.29363	2014
Enzymology	Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7.	Itoh T, Nakagawa E, Yoda M, Nakaichi A, Hibi T, Kimoto H.	Sci Rep	10.1038/s41598-019-51006-1	2019
Metabolism	Cysteine scanning mutagenesis and disulfide mapping analysis of arrangement of GspC and GspD protomers within the type 2 secretion system.	Wang X, Pineau C, Gu S, Guschinskaya N, Pickersgill RW, Shevchik VE.	J Biol Chem	10.1074/jbc.m112.346338	2012
Enzymology	Cyclic Di-GMP modulates the disease progression of Erwinia amylovora.	Edmunds AC, Castiblanco LF, Sundin GW, Waters CM.	J Bacteriol	10.1128/jb.02068-12	2013
	Acrylamide in Bakery Products: A Review on Health Risks, Legal Regulations and Strategies to Reduce Its Formation.	Sarion C, Codina GG, Dabija A.	Int J Environ Res Public Health	10.3390/ijerph18084332	2021
	Old Yellow Enzyme from Trypanosoma cruzi Exhibits In Vivo Prostaglandin F₂alpha Synthase Activity and Has a Key Role in Parasite Infection and Drug Susceptibility.	Diaz-Viraque F, Chiribao ML, Trochine A, Gonzalez-Herrera F, Castillo C, Liempi A, Kemmerling U, Maya JD, Robello C.	Front Immunol	10.3389/fimmu.2018.00456	2018
	The MarR-Type Regulator PA3458 Is Involved in Osmoadaptation Control in Pseudomonas aeruginosa.	Kotecka K, Kawalek A, Kobylecki K, Bartosik AA.	Int J Mol Sci	10.3390/ijms22083982	2021
	Interactions of Salmonella enterica Serovar Typhimurium and Pectobacterium carotovorum within a Tomato Soft Rot.	George AS, Cox CE, Desai P, Porwollik S, Chu W, de Moraes MH, McClelland M, Brandl MT, Teplitski M.	Appl Environ Microbiol	10.1128/aem.01913-17	2018
	Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers.	Koiv V, Roosaare M, Vedler E, Kivistik PA, Toppi K, Schryer DW, Remm M, Tenson T, Mae A.	Sci Rep	10.1038/srep11606	2015
Metabolism	The feruloyl esterase genes are required for full pathogenicity of the apple tree canker pathogen Valsa mali.	Xu M, Gao X, Chen J, Yin Z, Feng H, Huang L.	Mol Plant Pathol	10.1111/mpp.12619	2018
Metabolism	Dynamic interplay between the periplasmic and transmembrane domains of GspL and GspM in the type II secretion system.	Lallemand M, Login FH, Guschinskaya N, Pineau C, Effantin G, Robert X, Shevchik VE.	PLoS One	10.1371/journal.pone.0079562	2013
	Experimental Manipulation of Pectin Architecture in the Cell Wall of the Unicellular Charophyte, Penium Margaritaceum.	Palacio-Lopez K, Sun L, Reed R, Kang E, Sorensen I, Rose JKC, Domozych DS.	Front Plant Sci	10.3389/fpls.2020.01032	2020
	Antibacterial T6SS effectors with a VRR-Nuc domain are structure-specific nucleases.	Hespanhol JT, Sanchez-Limache DE, Nicastro GG, Mead L, Llontop EE, Chagas-Santos G, Farah CS, de Souza RF, Galhardo RDS, Lovering AL, Bayer-Santos E.	Elife	10.7554/elife.82437	2022
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	Essential Genes for In Vitro Growth of the Endophyte Herbaspirillum seropedicae SmR1 as Revealed by Transposon Insertion Site Sequencing.	Rosconi F, de Vries SP, Baig A, Fabiano E, Grant AJ.	Appl Environ Microbiol	10.1128/aem.02281-16	2016
Phenotype	Osmoregulated Periplasmic Glucans Transmit External Signals Through Rcs Phosphorelay Pathway in Yersinia enterocolitica.	Meng J, Huang C, Huang X, Liu D, Han B, Chen J.	Front Microbiol	10.3389/fmicb.2020.00122	2020
Metabolism	CdiA from Enterobacter cloacae delivers a toxic ribosomal RNase into target bacteria.	Beck CM, Morse RP, Cunningham DA, Iniguez A, Low DA, Goulding CW, Hayes CS.	Structure	10.1016/j.str.2014.02.012	2014
	CE16 acetylesterases: in silico analysis, catalytic machinery prediction and comparison with related SGNH hydrolases.	Urbanikova L.	3 Biotech	10.1007/s13205-020-02575-w	2021
Genetics	Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.	Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.	F1000Res	10.12688/f1000research.9416.3	2016
Metabolism	Linear population allocation by bistable switches in response to transient stimulation.	Srimani JK, Yao G, Neu J, Tanouchi Y, Lee TJ, You L.	PLoS One	10.1371/journal.pone.0105408	2014
Metabolism	Flp, a Fis-like protein, contributes to the regulation of type III secretion and virulence processes in the phytopathogen Xanthomonas campestris pv. campestris.	Leng M, Lu ZJ, Qin ZS, Qi YH, Lu GT, Tang JL.	Mol Plant Pathol	10.1111/mpp.12818	2019
Metabolism	A lower isoelectric point increases signal sequence-mediated secretion of recombinant proteins through a bacterial ABC transporter.	Byun H, Park J, Kim SC, Ahn JH.	J Biol Chem	10.1074/jbc.m117.786749	2017
Genetics	Pantoea ananatis Genetic Diversity Analysis Reveals Limited Genomic Diversity as Well as Accessory Genes Correlated with Onion Pathogenicity.	Stice SP, Stumpf SD, Gitaitis RD, Kvitko BH, Dutta B.	Front Microbiol	10.3389/fmicb.2018.00184	2018
Metabolism	BcsZ inhibits biofilm phenotypes and promotes virulence by blocking cellulose production in Salmonella enterica serovar Typhimurium.	Ahmad I, Rouf SF, Sun L, Cimdins A, Shafeeq S, Le Guyon S, Schottkowski M, Rhen M, Romling U, Romling U.	Microb Cell Fact	10.1186/s12934-016-0576-6	2016
	Analysis of the plant bos1 mutant highlights necrosis as an efficient defence mechanism during D. dadantii/Arabidospis thaliana interaction.	Kraepiel Y, Pedron J, Patrit O, Simond-Cote E, Hermand V, Van Gijsegem F.	PLoS One	10.1371/journal.pone.0018991	2011
	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.	Sanchez-Sanuy F, Peris-Peris C, Tomiyama S, Okada K, Hsing YI, San Segundo B, Campo S.	BMC Plant Biol	10.1186/s12870-019-2156-5	2019
Genetics	Genomes of sequence type 121 Listeria monocytogenes strains harbor highly conserved plasmids and prophages.	Schmitz-Esser S, Muller A, Stessl B, Wagner M.	Front Microbiol	10.3389/fmicb.2015.00380	2015
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Genetics	Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani.	Motyka-Pomagruk A, Zoledowska S, Misztak AE, Sledz W, Mengoni A, Lojkowska E.	BMC Genomics	10.1186/s12864-020-06863-w	2020
Metabolism	The toxin/immunity network of Burkholderia pseudomallei contact-dependent growth inhibition (CDI) systems.	Nikolakakis K, Amber S, Wilbur JS, Diner EJ, Aoki SK, Poole SJ, Tuanyok A, Keim PS, Peacock S, Hayes CS, Low DA.	Mol Microbiol	10.1111/j.1365-2958.2012.08039.x	2012
Metabolism	tmRNA regulates synthesis of the ArfA ribosome rescue factor.	Garza-Sanchez F, Schaub RE, Janssen BD, Hayes CS.	Mol Microbiol	10.1111/j.1365-2958.2011.07638.x	2011
Metabolism	Lon Protease Is Important for Growth Under Stressful Conditions and Pathogenicity of the Phytopathogen, Bacterium Dickeya solani.	Figaj D, Czaplewska P, Przepiora T, Ambroziak P, Potrykus M, Skorko-Glonek J.	Int J Mol Sci	10.3390/ijms21103687	2020
Metabolism	Receptor polymorphism restricts contact-dependent growth inhibition to members of the same species.	Ruhe ZC, Wallace AB, Low DA, Hayes CS.	mBio	10.1128/mbio.00480-13	2013
Metabolism	Generalized enzymatic mechanism of catalysis by tetrameric L-asparaginases from mesophilic bacteria.	Strzelczyk P, Zhang D, Dyba M, Wlodawer A, Lubkowski J.	Sci Rep	10.1038/s41598-020-74480-4	2020
	Characterization of a Bvg-regulated fatty acid methyl-transferase in Bordetella pertussis.	Rivera-Millot A, Lesne E, Solans L, Coutte L, Bertrand-Michel J, Froguel P, Dhennin V, Hot D, Locht C, Antoine R, Jacob-Dubuisson F.	PLoS One	10.1371/journal.pone.0176396	2017
	Functional Characterization of a Global Virulence Regulator Hfq and Identification of Hfq-Dependent sRNAs in the Plant Pathogen Pantoea ananatis.	Shin GY, Schachterle JK, Shyntum DY, Moleleki LN, Coutinho TA, Sundin GW.	Front Microbiol	10.3389/fmicb.2019.02075	2019
Enzymology	Structure and function of a novel GH8 endoglucanase from the bacterial cellulose synthase complex of Raoultella ornithinolytica.	Scapin SMN, Souza FHM, Zanphorlin LM, de Almeida TS, Sade YB, Cardoso AM, Pinheiro GL, Murakami MT.	PLoS One	10.1371/journal.pone.0176550	2017
	A novel human-infection-derived bacterium provides insights into the evolutionary origins of mutualistic insect-bacterial symbioses.	Clayton AL, Oakeson KF, Gutin M, Pontes A, Dunn DM, von Niederhausern AC, Weiss RB, Fisher M, Dale C.	PLoS Genet	10.1371/journal.pgen.1002990	2012
Metabolism	Solution structure of homology region (HR) domain of type II secretion system.	Gu S, Kelly G, Wang X, Frenkiel T, Shevchik VE, Pickersgill RW.	J Biol Chem	10.1074/jbc.m111.300624	2012
	Bacteria in Ostreococcus tauri cultures - friends, foes or hitchhikers?	Abby SS, Touchon M, De Jode A, Grimsley N, Piganeau G.	Front Microbiol	10.3389/fmicb.2014.00505	2014
	Origin and Evolution of the Kiwifruit Canker Pandemic.	McCann HC, Li L, Liu Y, Li D, Pan H, Zhong C, Rikkerink EHA, Templeton MD, Straub C, Colombi E, Rainey PB, Huang H.	Genome Biol Evol	10.1093/gbe/evx055	2017
Genetics	Comparative genomics of CytR, an unusual member of the LacI family of transcription factors.	Sernova NV, Gelfand MS.	PLoS One	10.1371/journal.pone.0044194	2012
	Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria.	Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner JD, Perna NT.	BMC Genomics	10.1186/1471-2164-13-110	2012
Metabolism	Increased Osmolarity in Biofilm Triggers RcsB-Dependent Lipid A Palmitoylation in Escherichia coli.	Szczesny M, Beloin C, Ghigo JM.	mBio	10.1128/mbio.01415-18	2018
Genetics	Comparative genomic analysis of Pectobacterium carotovorum subsp. brasiliense SX309 provides novel insights into its genetic and phenotypic features.	Li L, Yuan L, Shi Y, Xie X, Chai A, Wang Q, Li B.	BMC Genomics	10.1186/s12864-019-5831-x	2019
Pathogenicity	Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora.	Tremblay O, Thow Z, Merrill AR.	Toxins (Basel)	10.3390/toxins12120792	2020
	Effects of iron and boron combinations on the suppression of Fusarium wilt in banana.	Dong X, Wang M, Ling N, Shen Q, Guo S.	Sci Rep	10.1038/srep38944	2016
	A New Member of the Growing Family of Contact-Dependent Growth Inhibition Systems in Xenorhabdus doucetiae.	Ogier JC, Duvic B, Lanois A, Givaudan A, Gaudriault S.	PLoS One	10.1371/journal.pone.0167443	2016
Metabolism	Structure and assembly of pilotin-dependent and -independent secretins of the type II secretion system.	Howard SP, Estrozi LF, Bertrand Q, Contreras-Martel C, Strozen T, Job V, Martins A, Fenel D, Schoehn G, Dessen A.	PLoS Pathog	10.1371/journal.ppat.1007731	2019
Genetics	Genomic Characterisation of Mushroom Pathogenic Pseudomonads and Their Interaction with Bacteriophages.	Storey N, Rabiey M, Neuman BW, Jackson RW, Mulley G.	Viruses	10.3390/v12111286	2020
Genetics	Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii.	De Maayer P, Aliyu H, Vikram S, Blom J, Duffy B, Cowan DA, Smits THM, Venter SN, Coutinho TA.	Front Microbiol	10.3389/fmicb.2017.01755	2017
	Comparative Genomics of Ralstonia solanacearum Identifies Candidate Genes Associated with Cool Virulence.	Bocsanczy AM, Huguet-Tapia JC, Norman DJ.	Front Plant Sci	10.3389/fpls.2017.01565	2017
Metabolism	Substrate dynamics in enzyme action: rotations of monosaccharide subunits in the binding groove are essential for pectin methylesterase processivity.	Mercadante D, Melton LD, Jameson GB, Williams MA, De Simone A.	Biophys J	10.1016/j.bpj.2013.02.049	2013
Metabolism	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	Peng H, Chen Z, Fang Z, Zhou J, Xia Z, Gao L, Chen L, Li L, Li T, Zhai W, Zhang W.	Sci Rep	10.1038/srep12165	2015
Metabolism	Vibrio fischeri DarR Directs Responses to d-Aspartate and Represents a Group of Similar LysR-Type Transcriptional Regulators.	Jones RM, Popham DL, Schmidt AL, Neidle EL, Stabb EV.	J Bacteriol	10.1128/jb.00773-17	2018
	Targeting the Type II Secretion System: Development, Optimization, and Validation of a High-Throughput Screen for the Identification of Small Molecule Inhibitors.	Waack U, Johnson TL, Chedid K, Xi C, Simmons LA, Mobley HLT, Sandkvist M.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00380	2017
Metabolism	The Enigmatic Origin of Papillomavirus Protein Domains.	Puustusmaa M, Kirsip H, Gaston K, Abroi A.	Viruses	10.3390/v9090240	2017
	A Diverged Transcriptional Network for Usage of Two Fe-S Cluster Biogenesis Machineries in the Delta-Proteobacterium Myxococcus xanthus.	Sourice M, Askenasy I, Garcia PS, Denis Y, Brasseur G, Kiley PJ, Py B, Aubert C.	mBio	10.1128/mbio.03001-22	2023
Metabolism	'Candidatus Phytoplasma solani' interferes with the distribution and uptake of iron in tomato.	Buoso S, Pagliari L, Musetti R, Martini M, Marroni F, Schmidt W, Santi S.	BMC Genomics	10.1186/s12864-019-6062-x	2019
	Contribution of the Salmonella enterica KdgR Regulon to Persistence of the Pathogen in Vegetable Soft Rots.	George AS, Salas Gonzalez I, Lorca GL, Teplitski M.	Appl Environ Microbiol	10.1128/aem.03355-15	2016
	Perturbation of Critical Prolines in Gloeobacter violaceus Ligand-gated Ion Channel (GLIC) Supports Conserved Gating Motions among Cys-loop Receptors.	Rienzo M, Rocchi AR, Threatt SD, Dougherty DA, Lummis SC.	J Biol Chem	10.1074/jbc.m115.694372	2016
	Oleanolic Acid Induces the Type III Secretion System of Ralstonia solanacearum.	Wu D, Ding W, Zhang Y, Liu X, Yang L.	Front Microbiol	10.3389/fmicb.2015.01466	2015
Metabolism	SurA is involved in the targeting to the outer membrane of a Tat signal sequence-anchored protein.	Rondelet A, Condemine G.	J Bacteriol	10.1128/jb.01419-12	2012
Metabolism	The Type VI Secretion System Modulates Flagellar Gene Expression and Secretion in Citrobacter freundii and Contributes to Adhesion and Cytotoxicity to Host Cells.	Liu L, Hao S, Lan R, Wang G, Xiao D, Sun H, Xu J.	Infect Immun	10.1128/iai.03071-14	2015
Metabolism	Type VI Secretion Effectors: Methodologies and Biology.	Lien YW, Lai EM.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00254	2017
Transcriptome	Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT.	Pavan ME, Pavan EE, Lopez NI, Levin L, Pettinari MJ.	Appl Environ Microbiol	10.1128/aem.00903-15	2015
	T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'.	Adriaenssens EM, Van Vaerenbergh J, Vandenheuvel D, Dunon V, Ceyssens PJ, De Proft M, Kropinski AM, Noben JP, Maes M, Lavigne R.	PLoS One	10.1371/journal.pone.0033227	2012
Pathogenicity	DspA/E Contributes to Apoplastic Accumulation of ROS in Non-host A. thaliana.	Launay A, Patrit O, Wenes E, Fagard M.	Front Plant Sci	10.3389/fpls.2016.00545	2016
	RovM and CsrA Negatively Regulate Urease Expression in Yersinia pseudotuberculosis.	Dai Q, Xu L, Xiao L, Zhu K, Song Y, Li C, Zhu L, Shen X, Wang Y.	Front Microbiol	10.3389/fmicb.2018.00348	2018
Metabolism	Environmental Metabolomics of the Tomato Plant Surface Provides Insights on Salmonella enterica Colonization.	Han S, Micallef SA.	Appl Environ Microbiol	10.1128/aem.00435-16	2016
Enzymology	Mechanistic insights into the allosteric regulation of bacterial ADP-glucose pyrophosphorylases.	Comino N, Cifuente JO, Marina A, Orrantia A, Eguskiza A, Guerin ME.	J Biol Chem	10.1074/jbc.m116.773408	2017
Enzymology	A mutation in an exoglucanase of Xanthomonas oryzae pv. oryzae, which confers an endo mode of activity, affects bacterial virulence, but not the induction of immune responses, in rice.	Tayi L, Kumar S, Nathawat R, Haque AS, Maku RV, Patel HK, Sankaranarayanan R, Sonti RV.	Mol Plant Pathol	10.1111/mpp.12620	2018
	Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum.	Kwenda S, Gorshkov V, Ramesh AM, Naidoo S, Rubagotti E, Birch PR, Moleleki LN.	BMC Genomics	10.1186/s12864-016-2376-0	2016
Metabolism	Molecular Basis for Immunity Protein Recognition of a Type VII Secretion System Exported Antibacterial Toxin.	Klein TA, Pazos M, Surette MG, Vollmer W, Whitney JC.	J Mol Biol	10.1016/j.jmb.2018.08.027	2018
Metabolism	Differences in protein structural regions that impact functional specificity in GT2 family beta-glucan synthases.	Oehme DP, Shafee T, Downton MT, Bacic A, Doblin MS.	PLoS One	10.1371/journal.pone.0224442	2019
Metabolism	Impact of siderophore production by Pseudomonas syringae pv. syringae 22d/93 on epiphytic fitness and biocontrol activity against Pseudomonas syringae pv. glycinea 1a/96.	Wensing A, Braun SD, Buttner P, Expert D, Volksch B, Ullrich MS, Weingart H.	Appl Environ Microbiol	10.1128/aem.02979-09	2010
Pathogenicity	Effects of Non-insulin Anti-hyperglycemic Agents on Gut Microbiota: A Systematic Review on Human and Animal Studies.	Cao TTB, Wu KC, Hsu JL, Chang CS, Chou C, Lin CY, Liao YM, Lin PC, Yang LY, Lin HW.	Front Endocrinol (Lausanne)	10.3389/fendo.2020.573891	2020
Metabolism	Lipidation of Class IV CdiA Effector Proteins Promotes Target Cell Recognition during Contact-Dependent Growth Inhibition.	Halvorsen TM, Garza-Sanchez F, Ruhe ZC, Bartelli NL, Chan NA, Nguyen JY, Low DA, Hayes CS.	mBio	10.1128/mbio.02530-21	2021
Metabolism	Identification of Aeromonas hydrophila Genes Preferentially Expressed after Phagocytosis by Tetrahymena and Involvement of Methionine Sulfoxide Reductases.	Pang M, Lin X, Liu J, Guo C, Gao S, Du H, Lu C, Liu Y.	Front Cell Infect Microbiol	10.3389/fcimb.2016.00199	2016
Metabolism	Cellulose production, activated by cyclic di-GMP through BcsA and BcsZ, is a virulence factor and an essential determinant of the three-dimensional architectures of biofilms formed by Erwinia amylovora Ea1189.	Castiblanco LF, Sundin GW.	Mol Plant Pathol	10.1111/mpp.12501	2018
	The PhoPQ Two-Component System Is the Major Regulator of Cell Surface Properties, Stress Responses and Plant-Derived Substrate Utilisation During Development of Pectobacterium versatile-Host Plant Pathosystems.	Kravchenko U, Gogoleva N, Kalubaka N, Kruk A, Diubo Y, Gogolev Y, Nikolaichik Y.	Front Microbiol	10.3389/fmicb.2020.621391	2020
	A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals.	Park SY, Cromie MJ, Lee EJ, Groisman EA.	Cell	10.1016/j.cell.2010.07.046	2010
	Genome-wide identification of Pseudomonas syringae genes required for fitness during colonization of the leaf surface and apoplast.	Helmann TC, Deutschbauer AM, Lindow SE.	Proc Natl Acad Sci U S A	10.1073/pnas.1908858116	2019
	The LacI-Family Transcription Factor, RbsR, Is a Pleiotropic Regulator of Motility, Virulence, Siderophore and Antibiotic Production, Gas Vesicle Morphogenesis and Flotation in Serratia.	Lee CM, Monson RE, Adams RM, Salmond GPC.	Front Microbiol	10.3389/fmicb.2017.01678	2017
Genetics	Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases.	Castillo Villamizar GA, Nacke H, Boehning M, Herz K, Daniel R.	mBio	10.1128/mbio.01966-18	2019
	Structure of the bacterial plant-ferredoxin receptor FusA.	Grinter R, Josts I, Mosbahi K, Roszak AW, Cogdell RJ, Bonvin AM, Milner JJ, Kelly SM, Byron O, Smith BO, Walker D.	Nat Commun	10.1038/ncomms13308	2016
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Metabolism	The ComP-ComA quorum system is essential for "Trojan horse" like pathogenesis in Bacillus nematocida.	Deng X, Tian Y, Niu Q, Xu X, Shi H, Zhang H, Liang L, Zhang K, Huang X.	PLoS One	10.1371/journal.pone.0076920	2013
	Jekyll or Hyde? The genome (and more) of Nesidiocoris tenuis, a zoophytophagous predatory bug that is both a biological control agent and a pest.	Ferguson KB, Visser S, Dalikova M, Provaznikova I, Urbaneja A, Perez-Hedo M, Marec F, Werren JH, Zwaan BJ, Pannebakker BA, Verhulst EC.	Insect Mol Biol	10.1111/imb.12688	2021
	Extreme specificity of NCR gene expression in Medicago truncatula.	Guefrachi I, Nagymihaly M, Pislariu CI, Van de Velde W, Ratet P, Mars M, Udvardi MK, Kondorosi E, Mergaert P, Alunni B.	BMC Genomics	10.1186/1471-2164-15-712	2014
	The role of bacterial biofilms and surface components in plant-bacterial associations.	Bogino PC, Oliva Mde L, Sorroche FG, Giordano W.	Int J Mol Sci	10.3390/ijms140815838	2013
	DltX of Bacillus thuringiensis Is Essential for D-Alanylation of Teichoic Acids and Resistance to Antimicrobial Response in Insects.	Kamar R, Rejasse A, Jehanno I, Attieh Z, Courtin P, Chapot-Chartier MP, Nielsen-Leroux C, Lereclus D, El Chamy L, Kallassy M, Sanchis-Borja V.	Front Microbiol	10.3389/fmicb.2017.01437	2017
Enzymology	Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing.	Jarvis KG, White JR, Grim CJ, Ewing L, Ottesen AR, Beaubrun JJ, Pettengill JB, Brown E, Hanes DE.	BMC Microbiol	10.1186/s12866-015-0497-2	2015
	Tolerance to oxidative stress is required for maximal xylem colonization by the xylem-limited bacterial phytopathogen, Xylella fastidiosa.	Wang P, Lee Y, Igo MM, Roper MC.	Mol Plant Pathol	10.1111/mpp.12456	2017
	Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape.	Gervais J, Plissonneau C, Linglin J, Meyer M, Labadie K, Cruaud C, Fudal I, Rouxel T, Balesdent MH.	Mol Plant Pathol	10.1111/mpp.12464	2017
	A dodecameric ring-like structure of the N0 domain of the type II secretin from enterotoxigenic Escherichia coli.	Korotkov KV, Delarosa JR, Hol WGJ.	J Struct Biol	10.1016/j.jsb.2013.06.013	2013
Metabolism	YghG (GspSbeta) is a novel pilot protein required for localization of the GspSbeta type II secretion system secretin of enterotoxigenic Escherichia coli.	Strozen TG, Li G, Howard SP.	Infect Immun	10.1128/iai.06394-11	2012
	HU of Streptococcus pneumoniae Is Essential for the Preservation of DNA Supercoiling.	Ferrandiz MJ, Carreno D, Ayora S, de la Campa AG.	Front Microbiol	10.3389/fmicb.2018.00493	2018
Pathogenicity	OmpK26, a novel porin associated with carbapenem resistance in Klebsiella pneumoniae.	Garcia-Sureda L, Domenech-Sanchez A, Barbier M, Juan C, Gasco J, Alberti S.	Antimicrob Agents Chemother	10.1128/aac.00309-11	2011
Metabolism	The outer membrane protein TolC is required for phytoalexin resistance and virulence of the fire blight pathogen Erwinia amylovora.	Al-Karablieh N, Weingart H, Ullrich MS.	Microb Biotechnol	10.1111/j.1751-7915.2009.00095.x	2009
Enzymology	Pea aphid as both host and vector for the phytopathogenic bacterium Pseudomonas syringae.	Stavrinides J, McCloskey JK, Ochman H.	Appl Environ Microbiol	10.1128/aem.02860-08	2009
Metabolism	Novel Role for PilNO in Type IV Pilus Retraction Revealed by Alignment Subcomplex Mutations.	Leighton TL, Dayalani N, Sampaleanu LM, Howell PL, Burrows LL.	J Bacteriol	10.1128/jb.00220-15	2015
Metabolism	Pathogenic Acinetobacter species have a functional type I secretion system and contact-dependent inhibition systems.	Harding CM, Pulido MR, Di Venanzio G, Kinsella RL, Webb AI, Scott NE, Pachon J, Feldman MF.	J Biol Chem	10.1074/jbc.m117.781575	2017
	Transposon insertion libraries for the characterization of mutants from the kiwifruit pathogen Pseudomonas syringae pv. actinidiae.	Mesarich CH, Rees-George J, Gardner PP, Ghomi FA, Gerth ML, Andersen MT, Rikkerink EH, Fineran PC, Templeton MD.	PLoS One	10.1371/journal.pone.0172790	2017
Metabolism	Chemoperception of Specific Amino Acids Controls Phytopathogenicity in Pseudomonas syringae pv. tomato.	Cerna-Vargas JP, Santamaria-Hernando S, Matilla MA, Rodriguez-Herva JJ, Daddaoua A, Rodriguez-Palenzuela P, Krell T, Lopez-Solanilla E.	mBio	10.1128/mbio.01868-19	2019
Metabolism	ExsB is required for correct assembly of the Pseudomonas aeruginosa type III secretion apparatus in the bacterial membrane and full virulence in vivo.	Perdu C, Huber P, Bouillot S, Blocker A, Elsen S, Attree I, Faudry E.	Infect Immun	10.1128/iai.00048-15	2015
Metabolism	A predicted binding site for cholesterol on the GABAA receptor.	Henin J, Salari R, Murlidaran S, Brannigan G.	Biophys J	10.1016/j.bpj.2014.03.024	2014
Metabolism	Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon.	Kim CC, Lunken GR, Kelly WJ, Patchett ML, Jordens Z, Tannock GW, Sims IM, Bell TJ, Hedderley D, Henrissat B, Rosendale DI.	ISME J	10.1038/s41396-019-0363-6	2019
Genetics	Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation.	Gonzalez C, Lazcano M, Valdes J, Holmes DS.	Front Microbiol	10.3389/fmicb.2016.02035	2016
Enzymology	Legionella pneumophila secretes an endoglucanase that belongs to the family-5 of glycosyl hydrolases and is dependent upon type II secretion.	Pearce MM, Cianciotto NP.	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01801.x	2009
Metabolism	Mycobacterium hassiacum recovers from nitrogen starvation with up-regulation of a novel glucosylglycerate hydrolase and depletion of the accumulated glucosylglycerate.	Alarico S, Costa M, Sousa MS, Maranha A, Lourenco EC, Faria TQ, Ventura MR, Empadinhas N.	Sci Rep	10.1038/srep06766	2014
Metabolism	Recent advances in the Suf Fe-S cluster biogenesis pathway: Beyond the Proteobacteria.	Outten FW.	Biochim Biophys Acta	10.1016/j.bbamcr.2014.11.001	2015
Metabolism	Identification of the HrpS binding site in the hrpL promoter and effect of the RpoN binding site of HrpS on the regulation of the type III secretion system in Erwinia amylovora.	Lee JH, Sundin GW, Zhao Y.	Mol Plant Pathol	10.1111/mpp.12324	2016
Metabolism	Siderophore-mediated iron acquisition influences motility and is required for full virulence of the xylem-dwelling bacterial phytopathogen Pantoea stewartii subsp. stewartii.	Burbank L, Mohammadi M, Roper MC.	Appl Environ Microbiol	10.1128/aem.02503-14	2015
Metabolism	Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction.	Lavi-Itzkovitz A, Peterman N, Jost D, Levine E.	Nucleic Acids Res	10.1093/nar/gku889	2014
Metabolism	The bacterium Pantoea stewartii uses two different type III secretion systems to colonize its plant host and insect vector.	Correa VR, Majerczak DR, Ammar el-D, Merighi M, Pratt RC, Hogenhout SA, Coplin DL, Redinbaugh MG.	Appl Environ Microbiol	10.1128/aem.00892-12	2012
Metabolism	Activation of an anti-bacterial toxin by the biosynthetic enzyme CysK: mechanism of binding, interaction specificity and competition with cysteine synthase.	Benoni R, Beck CM, Garza-Sanchez F, Bettati S, Mozzarelli A, Hayes CS, Campanini B.	Sci Rep	10.1038/s41598-017-09022-6	2017
Metabolism	Characterization of a nitrilase and a nitrile hydratase from Pseudomonas sp. strain UW4 that converts indole-3-acetonitrile to indole-3-acetic acid.	Duca D, Rose DR, Glick BR.	Appl Environ Microbiol	10.1128/aem.00649-14	2014
Metabolism	Nitric oxide: an effective weapon of the plant or the pathogen?	Arasimowicz-Jelonek M, Floryszak-Wieczorek J.	Mol Plant Pathol	10.1111/mpp.12095	2014
	The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism.	Otani H, Stogios PJ, Xu X, Nocek B, Li SN, Savchenko A, Eltis LD.	Nucleic Acids Res	10.1093/nar/gkv955	2016
Genetics	Tailed Lytic Bacteriophages of Soft Rot Pectobacteriaceae.	Miroshnikov KA, Evseev PV, Lukianova AA, Ignatov AN.	Microorganisms	10.3390/microorganisms9091819	2021
Metabolism	Agrobacterium tumefaciens deploys a superfamily of type VI secretion DNase effectors as weapons for interbacterial competition in planta.	Ma LS, Hachani A, Lin JS, Filloux A, Lai EM.	Cell Host Microbe	10.1016/j.chom.2014.06.002	2014
Metabolism	Bacterial secretins form constitutively open pores akin to general porins.	Disconzi E, Guilvout I, Chami M, Masi M, Huysmans GH, Pugsley AP, Bayan N.	J Bacteriol	10.1128/jb.00750-13	2014
Metabolism	Integrated multi-omic analysis of host-microbiota interactions in acute oak decline.	Broberg M, Doonan J, Mundt F, Denman S, McDonald JE.	Microbiome	10.1186/s40168-018-0408-5	2018
Genetics	Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from Frankliniella occidentalis.	Facey PD, Meric G, Hitchings MD, Pachebat JA, Hegarty MJ, Chen X, Morgan LV, Hoeppner JE, Whitten MM, Kirk WD, Dyson PJ, Sheppard SK, Del Sol R.	Genome Biol Evol	10.1093/gbe/evv136	2015
Metabolism	Degradation of the Plant Defense Signal Salicylic Acid Protects Ralstonia solanacearum from Toxicity and Enhances Virulence on Tobacco.	Lowe-Power TM, Jacobs JM, Ailloud F, Fochs B, Prior P, Allen C.	mBio	10.1128/mbio.00656-16	2016
Metabolism	Xanthomonas oryzae pv. oryzae chemotaxis components and chemoreceptor Mcp2 are involved in the sensing of constituents of xylem sap and contribute to the regulation of virulence-associated functions and entry into rice.	Kumar Verma R, Samal B, Chatterjee S.	Mol Plant Pathol	10.1111/mpp.12718	2018
Phylogeny	Characterization of an obligate intracellular bacterium in the midgut epithelium of the bulrush bug Chilacis typhae (Heteroptera, Lygaeidae, Artheneinae).	Kuechler SM, Dettner K, Kehl S.	Appl Environ Microbiol	10.1128/aem.02983-10	2011
Genetics	Comparison of Highly and Weakly Virulent Dickeya solani Strains, With a View on the Pangenome and Panregulon of This Species.	Golanowska M, Potrykus M, Motyka-Pomagruk A, Kabza M, Bacci G, Galardini M, Bazzicalupo M, Makalowska I, Smalla K, Mengoni A, Hugouvieux-Cotte-Pattat N, Lojkowska E.	Front Microbiol	10.3389/fmicb.2018.01940	2018
Metabolism	Genetically distinct pathways guide effector export through the type VI secretion system.	Whitney JC, Beck CM, Goo YA, Russell AB, Harding BN, De Leon JA, Cunningham DA, Tran BQ, Low DA, Goodlett DR, Hayes CS, Mougous JD.	Mol Microbiol	10.1111/mmi.12571	2014
	Fis Regulates Type III Secretion System by Influencing the Transcription of exsA in Pseudomonas aeruginosa Strain PA14.	Deng X, Li M, Pan X, Zheng R, Liu C, Chen F, Liu X, Cheng Z, Jin S, Wu W.	Front Microbiol	10.3389/fmicb.2017.00669	2017
	Selection of orphan Rhs toxin expression in evolved Salmonella enterica serovar Typhimurium.	Koskiniemi S, Garza-Sanchez F, Sandegren L, Webb JS, Braaten BA, Poole SJ, Andersson DI, Hayes CS, Low DA.	PLoS Genet	10.1371/journal.pgen.1004255	2014
Metabolism	Characterization of genes required for the pathogenicity of Pectobacterium carotovorum subsp. carotovorum Pcc21 in Chinese cabbage.	Lee DH, Lim JA, Lee J, Roh E, Jung K, Choi M, Oh C, Ryu S, Yun J, Heu S.	Microbiology (Reading)	10.1099/mic.0.067280-0	2013
Metabolism	Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides.	Royer M, Koebnik R, Marguerettaz M, Barbe V, Robin GP, Brin C, Carrere S, Gomez C, Hugelland M, Voller GH, Noell J, Pieretti I, Rausch S, Verdier V, Poussier S, Rott P, Sussmuth RD, Cociancich S.	BMC Genomics	10.1186/1471-2164-14-658	2013
	Evolution of Pentameric Ligand-Gated Ion Channels: Pro-Loop Receptors.	Jaiteh M, Taly A, Henin J.	PLoS One	10.1371/journal.pone.0151934	2016
Metabolism	The c-di-GMP phosphodiesterase BifA is involved in the virulence of bacteria from the Pseudomonas syringae complex.	Aragon IM, Perez-Mendoza D, Gallegos MT, Ramos C.	Mol Plant Pathol	10.1111/mpp.12218	2015
	Rhizosphere microbiome assemblage is affected by plant development.	Chaparro JM, Badri DV, Vivanco JM.	ISME J	10.1038/ismej.2013.196	2014
	Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes.	Dos Santos PC, Fang Z, Mason SW, Setubal JC, Dixon R.	BMC Genomics	10.1186/1471-2164-13-162	2012
Metabolism	Regulation of lipid biosynthesis, sliding motility, and biofilm formation by a membrane-anchored nucleoid-associated protein of Mycobacterium tuberculosis.	Ghosh S, Indi SS, Nagaraja V.	J Bacteriol	10.1128/jb.02081-12	2013
Phylogeny	Sequence diversity in the Dickeya fliC gene: phylogeny of the Dickeya genus and TaqMan® PCR for 'D. solani', new biovar 3 variant on potato in Europe.	Van Vaerenbergh J, Baeyen S, De Vos P, Maes M.	PLoS One	10.1371/journal.pone.0035738	2012
	The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity toward beta-Glucans.	Lafond M, Sulzenbacher G, Freyd T, Henrissat B, Berrin JG, Garron ML.	J Biol Chem	10.1074/jbc.m115.695999	2016
Enzymology	Metabolic fate of unsaturated glucuronic/iduronic acids from glycosaminoglycans: molecular identification and structure determination of streptococcal isomerase and dehydrogenase.	Maruyama Y, Oiki S, Takase R, Mikami B, Murata K, Hashimoto W.	J Biol Chem	10.1074/jbc.m114.604546	2015
Metabolism	Functional Characterization of Pseudomonas Contact Dependent Growth Inhibition (CDI) Systems.	Mercy C, Ize B, Salcedo SP, de Bentzmann S, Bigot S.	PLoS One	10.1371/journal.pone.0147435	2016
	An Osmoregulatory Mechanism Operating through OmpR and LrhA Controls the Motile-Sessile Switch in the Plant Growth-Promoting Bacterium Pantoea alhagi.	Li S, Liang H, Wei Z, Bai H, Li M, Li Q, Qu M, Shen X, Wang Y, Zhang L.	Appl Environ Microbiol	10.1128/aem.00077-19	2019
Metabolism	Fe-S cluster assembly in the supergroup Excavata.	Pena-Diaz P, Lukes J.	J Biol Inorg Chem	10.1007/s00775-018-1556-6	2018
Metabolism	Burkholderia BcpA mediates biofilm formation independently of interbacterial contact-dependent growth inhibition.	Garcia EC, Anderson MS, Hagar JA, Cotter PA.	Mol Microbiol	10.1111/mmi.12339	2013
	Global Analysis of Type Three Secretion System and Quorum Sensing Inhibition of Pseudomonas savastanoi by Polyphenols Extracts from Vegetable Residues.	Biancalani C, Cerboneschi M, Tadini-Buoninsegni F, Campo M, Scardigli A, Romani A, Tegli S.	PLoS One	10.1371/journal.pone.0163357	2016
	Identification, structure, and function of a novel type VI secretion peptidoglycan glycoside hydrolase effector-immunity pair.	Whitney JC, Chou S, Russell AB, Biboy J, Gardiner TE, Ferrin MA, Brittnacher M, Vollmer W, Mougous JD.	J Biol Chem	10.1074/jbc.m113.488320	2013
	CytR Homolog of Pectobacterium carotovorum subsp. carotovorum Controls Air-Liquid Biofilm Formation by Regulating Multiple Genes Involved in Cellulose Production, c-di-GMP Signaling, Motility, and Type III Secretion System in Response to Nutritional and Environmental Signals.	Haque MM, Oliver MMH, Nahar K, Alam MZ, Hirata H, Tsuyumu S.	Front Microbiol	10.3389/fmicb.2017.00972	2017
Genetics	Bacterial disease management: challenges, experience, innovation and future prospects: Challenges in Bacterial Molecular Plant Pathology.	Sundin GW, Castiblanco LF, Yuan X, Zeng Q, Yang CH.	Mol Plant Pathol	10.1111/mpp.12436	2016
Metabolism	Derivatives of plant phenolic compound affect the type III secretion system of Pseudomonas aeruginosa via a GacS-GacA two-component signal transduction system.	Yamazaki A, Li J, Zeng Q, Khokhani D, Hutchins WC, Yost AC, Biddle E, Toone EJ, Chen X, Yang CH.	Antimicrob Agents Chemother	10.1128/aac.00732-11	2012
Metabolism	Identification of phenolic compounds that suppress the virulence of Xanthomonas oryzae on rice via the type III secretion system.	Fan S, Tian F, Li J, Hutchins W, Chen H, Yang F, Yuan X, Cui Z, Yang CH, He C.	Mol Plant Pathol	10.1111/mpp.12415	2017
Genetics	Comparative genomics and evolution of regulons of the LacI-family transcription factors.	Ravcheev DA, Khoroshkin MS, Laikova ON, Tsoy OV, Sernova NV, Petrova SA, Rakhmaninova AB, Novichkov PS, Gelfand MS, Rodionov DA.	Front Microbiol	10.3389/fmicb.2014.00294	2014
Metabolism	Salmonella Persistence in Tomatoes Requires a Distinct Set of Metabolic Functions Identified by Transposon Insertion Sequencing.	de Moraes MH, Desai P, Porwollik S, Canals R, Perez DR, Chu W, McClelland M, Teplitski M.	Appl Environ Microbiol	10.1128/aem.03028-16	2017
	Structural and functional studies on the interaction of GspC and GspD in the type II secretion system.	Korotkov KV, Johnson TL, Jobling MG, Pruneda J, Pardon E, Heroux A, Turley S, Steyaert J, Holmes RK, Sandkvist M, Hol WG.	PLoS Pathog	10.1371/journal.ppat.1002228	2011
Metabolism	Txc, a new type II secretion system of Pseudomonas aeruginosa strain PA7, is regulated by the TtsS/TtsR two-component system and directs specific secretion of the CbpE chitin-binding protein.	Cadoret F, Ball G, Douzi B, Voulhoux R.	J Bacteriol	10.1128/jb.01563-14	2014
Metabolism	Intraspecies Competition in Serratia marcescens Is Mediated by Type VI-Secreted Rhs Effectors and a Conserved Effector-Associated Accessory Protein.	Alcoforado Diniz J, Coulthurst SJ.	J Bacteriol	10.1128/jb.00199-15	2015
	Systematic Analysis of c-di-GMP Signaling Mechanisms and Biological Functions in Dickeya zeae EC1.	Chen Y, Zhou J, Lv M, Liang Z, Parsek MR, Zhang LH.	mBio	10.1128/mbio.02993-20	2020
Metabolism	Differential expression of in vivo and in vitro protein profile of outer membrane of Acidovorax avenae subsp. avenae.	Ibrahim M, Shi Y, Qiu H, Li B, Jabeen A, Li L, Liu H, Kube M, Xie G, Wang Y, Blondel C, Santiviago CA, Contreras I, Sun G.	PLoS One	10.1371/journal.pone.0049657	2012
Metabolism	New insights into the assembly of bacterial secretins: structural studies of the periplasmic domain of XcpQ from Pseudomonas aeruginosa.	Van der Meeren R, Wen Y, Van Gelder P, Tommassen J, Devreese B, Savvides SN.	J Biol Chem	10.1074/jbc.m112.432096	2013
Metabolism	Contributions of Coulombic and Hofmeister Effects to the Osmotic Activation of Escherichia coli Transporter ProP.	Culham DE, Shkel IA, Record MT, Wood JM.	Biochemistry	10.1021/acs.biochem.5b01169	2016
Metabolism	A connecter-like factor, CacA, links RssB/RpoS and the CpxR/CpxA two-component system in Salmonella.	Kato A, Hayashi H, Nomura W, Emori H, Hagihara K, Utsumi R.	BMC Microbiol	10.1186/1471-2180-12-224	2012
Metabolism	HopX1 in Erwinia amylovora functions as an avirulence protein in apple and is regulated by HrpL.	Bocsanczy AM, Schneider DJ, DeClerck GA, Cartinhour S, Beer SV.	J Bacteriol	10.1128/jb.05065-11	2012
Enzymology	Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment.	Xiao Z, Bergeron H, Grosse S, Beauchemin M, Garron ML, Shaya D, Sulea T, Cygler M, Lau PC.	Appl Environ Microbiol	10.1128/aem.02220-07	2008
Metabolism	Molecular aspects of bacterial nanocellulose biosynthesis.	Jacek P, Dourado F, Gama M, Bielecki S.	Microb Biotechnol	10.1111/1751-7915.13386	2019
Metabolism	Engineering the xylan utilization system in Bacillus subtilis for production of acidic Xylooligosaccharides.	Rhee MS, Wei L, Sawhney N, Rice JD, St John FJ, Hurlbert JC, Preston JF.	Appl Environ Microbiol	10.1128/aem.03246-13	2014
	The OmpR Regulator of Burkholderia multivorans Controls Mucoid-to-Nonmucoid Transition and Other Cell Envelope Properties Associated with Persistence in the Cystic Fibrosis Lung.	Silva IN, Pessoa FD, Ramires MJ, Santos MR, Becker JD, Cooper VS, Moreira LM.	J Bacteriol	10.1128/jb.00216-18	2018
Phylogeny	Type material in the NCBI Taxonomy Database.	Federhen S.	Nucleic Acids Res	10.1093/nar/gku1127	2015
	Structure of the cholera toxin secretion channel in its closed state.	Reichow SL, Korotkov KV, Hol WG, Gonen T.	Nat Struct Mol Biol	10.1038/nsmb.1910	2010
Metabolism	Type IV Pilus Alignment Subcomplex Proteins PilN and PilO Form Homo- and Heterodimers in Vivo.	Leighton TL, Yong DH, Howell PL, Burrows LL.	J Biol Chem	10.1074/jbc.m116.738377	2016
Metabolism	Characterization of DalS, an ATP-binding cassette transporter for D-alanine, and its role in pathogenesis in Salmonella enterica.	Osborne SE, Tuinema BR, Mok MC, Lau PS, Bui NK, Tomljenovic-Berube AM, Vollmer W, Zhang K, Junop M, Coombes BK.	J Biol Chem	10.1074/jbc.m112.348227	2012
Metabolism	Two independent pathways for self-recognition in Proteus mirabilis are linked by type VI-dependent export.	Wenren LM, Sullivan NL, Cardarelli L, Septer AN, Gibbs KA.	mBio	10.1128/mbio.00374-13	2013
Pathogenicity	Should the biofilm mode of life be taken into consideration for microbial biocontrol agents?	Pandin C, Le Coq D, Canette A, Aymerich S, Briandet R.	Microb Biotechnol	10.1111/1751-7915.12693	2017
Pathogenicity	Transcriptional changes of the root-knot nematode Meloidogyne incognita in response to Arabidopsis thaliana root signals.	Teillet A, Dybal K, Kerry BR, Miller AJ, Curtis RH, Hedden P.	PLoS One	10.1371/journal.pone.0061259	2013
Metabolism	Function-related positioning of the type II secretion ATPase of Xanthomonas campestris pv. campestris.	Chen YL, Hu NT.	PLoS One	10.1371/journal.pone.0059123	2013
Genetics	Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts.	De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PR, Coutinho TA.	BMC Genomics	10.1186/1471-2164-15-404	2014
Metabolism	Characterization of the achromobactin iron acquisition operon in Sodalis glossinidius.	Smith CL, Weiss BL, Aksoy S, Runyen-Janecky LJ.	Appl Environ Microbiol	10.1128/aem.03959-12	2013
Metabolism	Salmonella enterica suppresses Pectobacterium carotovorum subsp. carotovorum population and soft rot progression by acidifying the microaerophilic environment.	Kwan G, Charkowski AO, Barak JD.	mBio	10.1128/mbio.00557-12	2013
Metabolism	The VgrG proteins are "à la carte" delivery systems for bacterial type VI effectors.	Hachani A, Allsopp LP, Oduko Y, Filloux A.	J Biol Chem	10.1074/jbc.m114.563429	2014
	Immunity and other defenses in pea aphids, Acyrthosiphon pisum.	Gerardo NM, Altincicek B, Anselme C, Atamian H, Barribeau SM, de Vos M, Duncan EJ, Evans JD, Gabaldon T, Ghanim M, Heddi A, Kaloshian I, Latorre A, Moya A, Nakabachi A, Parker BJ, Perez-Brocal V, Pignatelli M, Rahbe Y, Ramsey JS, Spragg CJ, Tamames J, Tamarit D, Tamborindeguy C, Vincent-Monegat C, Vilcinskas A.	Genome Biol	10.1186/gb-2010-11-2-r21	2010
	Redox-dependent condensation of the mycobacterial nucleoid by WhiB4.	Chawla M, Mishra S, Anand K, Parikh P, Mehta M, Vij M, Verma T, Singh P, Jakkala K, Verma HN, AjitKumar P, Ganguli M, Narain Seshasayee AS, Singh A.	Redox Biol	10.1016/j.redox.2018.08.006	2018
	Cell surface attachment structures contribute to biofilm formation and xylem colonization by Erwinia amylovora.	Koczan JM, Lenneman BR, McGrath MJ, Sundin GW.	Appl Environ Microbiol	10.1128/aem.05138-11	2011
Genetics	The genome sequence of the highly acetic acid-tolerant Zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant.	Mira NP, Munsterkotter M, Dias-Valada F, Santos J, Palma M, Roque FC, Guerreiro JF, Rodrigues F, Sousa MJ, Leao C, Guldener U, Sa-Correia I.	DNA Res	10.1093/dnares/dst058	2014
	Distinguishing bacterial pathogens of potato using a genome-wide microarray approach.	Aittamaa M, Somervuo P, Pirhonen M, Mattinen L, Nissinen R, Auvinen P, Valkonen JP.	Mol Plant Pathol	10.1111/j.1364-3703.2008.00482.x	2008
Metabolism	Identification of Novel Acinetobacter baumannii Type VI Secretion System Antibacterial Effector and Immunity Pairs.	Fitzsimons TC, Lewis JM, Wright A, Kleifeld O, Schittenhelm RB, Powell D, Harper M, Boyce JD.	Infect Immun	10.1128/iai.00297-18	2018
Metabolism	The global response regulator ExpA controls virulence gene expression through RsmA-mediated and RsmA-independent pathways in Pectobacterium wasabiae SCC3193.	Broberg M, Lee GW, Nykyri J, Lee YH, Pirhonen M, Palva ET.	Appl Environ Microbiol	10.1128/aem.03829-13	2014
Metabolism	The phytopathogen Pseudomonas syringae pv. tomato DC3000 has three high-affinity iron-scavenging systems functional under iron limitation conditions but dispensable for pathogenesis.	Jones AM, Wildermuth MC.	J Bacteriol	10.1128/jb.00069-10	2011
	Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization.	Brankatschk K, Kamber T, Pothier JF, Duffy B, Smits TH.	Microb Biotechnol	10.1111/1751-7915.12104	2014
Metabolism	The HD-GYP domain protein RpfG of Xanthomonas oryzae pv. oryzicola regulates synthesis of extracellular polysaccharides that contribute to biofilm formation and virulence on rice.	Zhang Y, Wei C, Jiang W, Wang L, Li C, Wang Y, Dow JM, Sun W.	PLoS One	10.1371/journal.pone.0059428	2013
	Diversification of Type VI Secretion System Toxins Reveals Ancient Antagonism among Bee Gut Microbes.	Steele MI, Kwong WK, Whiteley M, Moran NA.	mBio	10.1128/mbio.01630-17	2017
	Minor pseudopilin self-assembly primes type II secretion pseudopilus elongation.	Cisneros DA, Bond PJ, Pugsley AP, Campos M, Francetic O.	EMBO J	10.1038/emboj.2011.454	2012
Metabolism	Ralstonia solanacearum uses inorganic nitrogen metabolism for virulence, ATP production, and detoxification in the oxygen-limited host xylem environment.	Dalsing BL, Truchon AN, Gonzalez-Orta ET, Milling AS, Allen C.	mBio	10.1128/mbio.02471-14	2015
	PecS is a global regulator of the symptomatic phase in the phytopathogenic bacterium Erwinia chrysanthemi 3937.	Hommais F, Oger-Desfeux C, Van Gijsegem F, Castang S, Ligori S, Expert D, Nasser W, Reverchon S.	J Bacteriol	10.1128/jb.00553-08	2008
Pathogenicity	Promise for plant pest control: root-associated pseudomonads with insecticidal activities.	Kupferschmied P, Maurhofer M, Keel C.	Front Plant Sci	10.3389/fpls.2013.00287	2013
Metabolism	Responses to elevated c-di-GMP levels in mutualistic and pathogenic plant-interacting bacteria.	Perez-Mendoza D, Aragon IM, Prada-Ramirez HA, Romero-Jimenez L, Ramos C, Gallegos MT, Sanjuan J.	PLoS One	10.1371/journal.pone.0091645	2014
Metabolism	Fate of a Pseudomonas savastanoi pv. savastanoi type III secretion system mutant in olive plants (Olea europaea L.).	Perez-Martinez I, Rodriguez-Moreno L, Lambertsen L, Matas IM, Murillo J, Tegli S, Jimenez AJ, Ramos C.	Appl Environ Microbiol	10.1128/aem.00133-10	2010
Metabolism	KdgR, an IClR family transcriptional regulator, inhibits virulence mainly by repression of hrp genes in Xanthomonas oryzae pv. oryzae.	Lu Y, Rashidul IM, Hirata H, Tsuyumu S.	J Bacteriol	10.1128/jb.05714-11	2011
Metabolism	The 3-hydroxy-2-butanone pathway is required for Pectobacterium carotovorum pathogenesis.	Marquez-Villavicencio Mdel P, Weber B, Witherell RA, Willis DK, Charkowski AO.	PLoS One	10.1371/journal.pone.0022974	2011
Metabolism	Specificity of the type II secretion systems of enterotoxigenic Escherichia coli and Vibrio cholerae for heat-labile enterotoxin and cholera toxin.	Mudrak B, Kuehn MJ.	J Bacteriol	10.1128/jb.01542-09	2010
Metabolism	Coordinated cyclic-di-GMP repression of Salmonella motility through YcgR and cellulose.	Zorraquino V, Garcia B, Latasa C, Echeverz M, Toledo-Arana A, Valle J, Lasa I, Solano C.	J Bacteriol	10.1128/jb.01789-12	2013
Phylogeny	Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review.	Czajkowski R, Perombelon M, Jafra S, Lojkowska E, Potrykus M, van der Wolf J, Sledz W.	Ann Appl Biol	10.1111/aab.12166	2015
Enzymology	CorA, the magnesium/nickel/cobalt transporter, affects virulence and extracellular enzyme production in the soft rot pathogen Pectobacterium carotovorum.	Kersey CM, Agyemang PA, Dumenyo CK.	Mol Plant Pathol	10.1111/j.1364-3703.2011.00726.x	2012
	The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors.	Vanden Bergh P, Heller M, Braga-Lagache S, Frey J.	Proteome Sci	10.1186/1477-5956-11-42	2013
Metabolism	In vivo cross-linking of EpsG to EpsL suggests a role for EpsL as an ATPase-pseudopilin coupling protein in the Type II secretion system of Vibrio cholerae.	Gray MD, Bagdasarian M, Hol WG, Sandkvist M.	Mol Microbiol	10.1111/j.1365-2958.2010.07487.x	2011
	Intercellular and intracellular signalling systems that globally control the expression of virulence genes in plant pathogenic bacteria.	Ham JH.	Mol Plant Pathol	10.1111/mpp.12005	2013
	The Evolution of SlyA/RovA Transcription Factors from Repressors to Countersilencers in Enterobacteriaceae.	Will WR, Brzovic P, Le Trong I, Stenkamp RE, Lawrenz MB, Karlinsey JE, Navarre WW, Main-Hester K, Miller VL, Libby SJ, Fang FC.	mBio	10.1128/mbio.00009-19	2019
Genetics	Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.	Hane JK, Anderson JP, Williams AH, Sperschneider J, Singh KB.	PLoS Genet	10.1371/journal.pgen.1004281	2014
	The active site of oligogalacturonate lyase provides unique insights into cytoplasmic oligogalacturonate beta-elimination.	Abbott DW, Gilbert HJ, Boraston AB.	J Biol Chem	10.1074/jbc.m110.153981	2010
Metabolism	Attenuation of the sensing capabilities of PhoQ in transition to obligate insect-bacterial association.	Pontes MH, Smith KL, De Vooght L, Van Den Abbeele J, Dale C.	PLoS Genet	10.1371/journal.pgen.1002349	2011
	Strategies and molecular tools to fight antimicrobial resistance: resistome, transcriptome, and antimicrobial peptides.	Tavares LS, Silva CS, de Souza VC, da Silva VL, Diniz CG, Santos MO.	Front Microbiol	10.3389/fmicb.2013.00412	2013
	Accumulation and Secretion of Coumarinolignans and other Coumarins in Arabidopsis thaliana Roots in Response to Iron Deficiency at High pH.	Siso-Terraza P, Luis-Villarroya A, Fourcroy P, Briat JF, Abadia A, Gaymard F, Abadia J, Alvarez-Fernandez A.	Front Plant Sci	10.3389/fpls.2016.01711	2016
Metabolism	The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection.	Boulanger A, Zischek C, Lautier M, Jamet S, Rival P, Carrere S, Arlat M, Lauber E.	mBio	10.1128/mbio.01527-14	2014
	Genome Sequence of Azospirillum brasilense CBG497 and Comparative Analyses of Azospirillum Core and Accessory Genomes provide Insight into Niche Adaptation.	Wisniewski-Dye F, Lozano L, Acosta-Cruz E, Borland S, Drogue B, Prigent-Combaret C, Rouy Z, Barbe V, Herrera AM, Gonzalez V, Mavingui P.	Genes (Basel)	10.3390/genes3040576	2012
	Ligand activation of the prokaryotic pentameric ligand-gated ion channel ELIC.	Zimmermann I, Dutzler R.	PLoS Biol	10.1371/journal.pbio.1001101	2011
Metabolism	Regulation of the rhaEWRBMA Operon Involved in l-Rhamnose Catabolism through Two Transcriptional Factors, RhaR and CcpA, in Bacillus subtilis.	Hirooka K, Kodoi Y, Satomura T, Fujita Y.	J Bacteriol	10.1128/jb.00856-15	2015
Metabolism	Nitric oxide is required for an optimal establishment of the Medicago truncatula-Sinorhizobium meliloti symbiosis.	Del Giudice J, Cam Y, Damiani I, Fung-Chat F, Meilhoc E, Bruand C, Brouquisse R, Puppo A, Boscari A.	New Phytol	10.1111/j.1469-8137.2011.03693.x	2011
Pathogenicity	Discovery of plant phenolic compounds that act as type III secretion system inhibitors or inducers of the fire blight pathogen, Erwinia amylovora.	Khokhani D, Zhang C, Li Y, Wang Q, Zeng Q, Yamazaki A, Hutchins W, Zhou SS, Chen X, Yang CH.	Appl Environ Microbiol	10.1128/aem.00845-13	2013
Metabolism	Functional and computational analysis of amino acid patterns predictive of type III secretion system substrates in Pseudomonas syringae.	Schechter LM, Valenta JC, Schneider DJ, Collmer A, Sakk E.	PLoS One	10.1371/journal.pone.0036038	2012
Enzymology	Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control.	Kent LM, Loo TS, Melton LD, Mercadante D, Williams MA, Jameson GB.	J Biol Chem	10.1074/jbc.m115.673152	2016
	Bacterial-Chromatin Structural Proteins Regulate the Bimodal Expression of the Locus of Enterocyte Effacement (LEE) Pathogenicity Island in Enteropathogenic Escherichia coli.	Leh H, Khodr A, Bouger MC, Sclavi B, Rimsky S, Bury-Mone S.	mBio	10.1128/mbio.00773-17	2017
Metabolism	The Role of OmpR in the Expression of Genes of the KdgR Regulon Involved in the Uptake and Depolymerization of Oligogalacturonides in Yersinia enterocolitica.	Nieckarz M, Raczkowska A, Jaworska K, Stefanska E, Skorek K, Stosio D, Brzostek K.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00366	2017
	Multiple activities of the plant pathogen type III effector proteins WtsE and AvrE require WxxxE motifs.	Ham JH, Majerczak DR, Nomura K, Mecey C, Uribe F, He SY, Mackey D, Coplin DL.	Mol Plant Microbe Interact	10.1094/mpmi-22-6-0703	2009
	A new family of secreted toxins in pathogenic Neisseria species.	Jamet A, Jousset AB, Euphrasie D, Mukorako P, Boucharlat A, Ducousso A, Charbit A, Nassif X.	PLoS Pathog	10.1371/journal.ppat.1004592	2015
Metabolism	Tracking Proteins Secreted by Bacteria: What's in the Toolbox?	Maffei B, Francetic O, Subtil A.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00221	2017
Metabolism	The Rcs signal transduction pathway is triggered by enterobacterial common antigen structure alterations in Serratia marcescens.	Castelli ME, Vescovi EG.	J Bacteriol	10.1128/jb.00839-10	2011
Metabolism	Biochemical disclosure of the mycolate outer membrane of Corynebacterium glutamicum.	Marchand CH, Salmeron C, Bou Raad R, Meniche X, Chami M, Masi M, Blanot D, Daffe M, Tropis M, Huc E, Le Marechal P, Decottignies P, Bayan N.	J Bacteriol	10.1128/jb.06138-11	2012
Metabolism	Characterization of pyoverdine and achromobactin in Pseudomonas syringae pv. phaseolicola 1448a.	Owen JG, Ackerley DF.	BMC Microbiol	10.1186/1471-2180-11-218	2011
Metabolism	Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria.	Alav I, Kobylka J, Kuth MS, Pos KM, Picard M, Blair JMA, Bavro VN.	Chem Rev	10.1021/acs.chemrev.1c00055	2021
Metabolism	WtsE, an AvrE-family type III effector protein of Pantoea stewartii subsp. stewartii, causes cell death in non-host plants.	Ham JH, Majerczak D, Ewert S, Sreerekha MV, Mackey D, Coplin D.	Mol Plant Pathol	10.1111/j.1364-3703.2008.00489.x	2008
	Erwinia amylovora CRISPR elements provide new tools for evaluating strain diversity and for microbial source tracking.	McGhee GC, Sundin GW.	PLoS One	10.1371/journal.pone.0041706	2012
Metabolism	Proteomic identification of novel secreted antibacterial toxins of the Serratia marcescens type VI secretion system.	Fritsch MJ, Trunk K, Diniz JA, Guo M, Trost M, Coulthurst SJ.	Mol Cell Proteomics	10.1074/mcp.m113.030502	2013
Genetics	Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum.	Liu H, Coulthurst SJ, Pritchard L, Hedley PE, Ravensdale M, Humphris S, Burr T, Takle G, Brurberg MB, Birch PR, Salmond GP, Toth IK.	PLoS Pathog	10.1371/journal.ppat.1000093	2008
	On the path to uncover the bacterial type II secretion system.	Douzi B, Filloux A, Voulhoux R.	Philos Trans R Soc Lond B Biol Sci	10.1098/rstb.2011.0204	2012
	A highly-conserved single-stranded DNA-binding protein in Xanthomonas functions as a harpin-like protein to trigger plant immunity.	Li YR, Ma WX, Che YZ, Zou LF, Zakria M, Zou HS, Chen GY.	PLoS One	10.1371/journal.pone.0056240	2013
	Establishing a Role for Bacterial Cellulose in Environmental Interactions: Lessons Learned from Diverse Biofilm-Producing Proteobacteria.	Augimeri RV, Varley AJ, Strap JL.	Front Microbiol	10.3389/fmicb.2015.01282	2015
Metabolism	The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli.	Wang D, Calla B, Vimolmangkang S, Wu X, Korban SS, Huber SC, Clough SJ, Zhao Y.	PLoS One	10.1371/journal.pone.0025293	2011
Metabolism	Agroinfiltration reduces ABA levels and suppresses Pseudomonas syringae-elicited salicylic acid production in Nicotiana tabacum.	Rico A, Bennett MH, Forcat S, Huang WE, Preston GM.	PLoS One	10.1371/journal.pone.0008977	2010
	Systems level analysis of two-component signal transduction systems in Erwinia amylovora: role in virulence, regulation of amylovoran biosynthesis and swarming motility.	Zhao Y, Wang D, Nakka S, Sundin GW, Korban SS.	BMC Genomics	10.1186/1471-2164-10-245	2009
	The post-transcriptional regulator rsmA/csrA activates T3SS by stabilizing the 5' UTR of hrpG, the master regulator of hrp/hrc genes, in Xanthomonas.	Andrade MO, Farah CS, Wang N.	PLoS Pathog	10.1371/journal.ppat.1003945	2014
Metabolism	The atypical cation-conduction and gating properties of ELIC underscore the marked functional versatility of the pentameric ligand-gated ion-channel fold.	Gonzalez-Gutierrez G, Grosman C.	J Gen Physiol	10.1085/jgp.201411333	2015
Metabolism	The type II secretion system: biogenesis, molecular architecture and mechanism.	Korotkov KV, Sandkvist M, Hol WG.	Nat Rev Microbiol	10.1038/nrmicro2762	2012
	The Burkholderia bcpAIOB genes define unique classes of two-partner secretion and contact dependent growth inhibition systems.	Anderson MS, Garcia EC, Cotter PA.	PLoS Genet	10.1371/journal.pgen.1002877	2012
	A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems.	Zhang D, Iyer LM, Aravind L.	Nucleic Acids Res	10.1093/nar/gkr036	2011
	Assessment of a Potential Role of Dickeya dadantii DSM 18020 as a Pectinase Producer for Utilization in Poultry Diets Based on in silico Analyses.	Dittoe DK, Barabote RD, Rothrock MJ, Ricke SC	Front Microbiol	10.3389/fmicb.2020.00751	2020
	First Report of Bacterial Stem and Root Rot of Sweetpotato Caused by a Dickeya sp. (Erwinia chrysanthemi) in China.	Huang LF, Fang BP, Luo ZX, Chen JY, Zhang XJ, Wang ZY	Plant Dis	10.1094/PDIS-06-10-0417	2010
	Bacterial Stem Rot of Oncidium Orchid Caused by a Dickeya sp. (ex Pectobacterium chrysanthemi) in Mainland China.	Li B, Qiu W, Fang Y, Xie GL	Plant Dis	10.1094/PDIS-93-5-0552B	2009
	First report of Dickeya dadantii causing bacterial soft rot of Thaumatophyllum bipinnatifidum in Taiwan.	Wu YM, Wang LH, Chu CC	Plant Dis	10.1094/PDIS-04-22-0924-PDN	2022
Phylogeny	Dickeyafangzhongdai sp. nov., a plant-pathogenic bacterium isolated from pear trees (Pyrus pyrifolia).	Tian Y, Zhao Y, Yuan X, Yi J, Fan J, Xu Z, Hu B, De Boer SH, Li X.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001060	2016
Phylogeny	Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum).	van der Wolf JM, Nijhuis EH, Kowalewska MJ, Saddler GS, Parkinson N, Elphinstone JG, Pritchard L, Toth IK, Lojkowska E, Potrykus M, Waleron M, de Vos P, Cleenwerck I, Pirhonen M, Garlant L, Helias V, Pothier JF, Pfluger V, Duffy B, Tsror L, Manulis S.	Int J Syst Evol Microbiol	10.1099/ijs.0.052944-0	2014
	A novel phytopathogen Erwinia sorbitola sp. nov., isolated from the feces of ruddy shelducks.	Tao Y, Ge Y, Yang J, Song W, Jin D, Lin H, Zheng H, Lu S, Luo W, Huang Y, Zhuang Z, Xu J.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1109634	2023
Phylogeny	Proposal to reclassify Brenneria quercina (Hildebrand and Schroth 1967) Hauben et al. 1999 into a new genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii.	Brady CL, Cleenwerck I, Denman S, Venter SN, Rodriguez-Palenzuela P, Coutinho TA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.035055-0	2011
Phylogeny	Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov.	Samson R, Legendre JB, Christen R, Saux MF, Achouak W, Gardan L	Int J Syst Evol Microbiol	10.1099/ijs.0.02791-0	2005

References

#7346	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18020
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26354	IJSEM 1415 2005 ( DOI 10.1099/ijs.0.02791-0 , PubMed 16014461 )
#29987	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26354
#37455	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118839	Collection of Institut Pasteur ; Curators of the CIP; CIP 109008
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dickeya dadantii (DSM 18020, LMG 25991, NCPPB 898)

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Physiology and metabolism

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