Dickeya dianthicola (DSM 18054, CFBP 1200, ICMP 6427)

Name: Dickeya dianthicola (DSM 18054, CFBP 1200, ICMP 6427)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4351

Type strain

Culture col. no. DSM 18054 CFBP 1200 ICMP 6427 LMG 2485 NCPPB 453 1 more

NCBI tax ID(s) 1223568 204039

Special Collections DSMZ Literature strains

History DSMZ <- CFBP <- R. A. Lelliott; CN 26

Links

Dickeya dianthicola DSM 18054 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Dianthus caryophyllus.

Gram-negative motile rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10989

LMG 2966,ICMP 6427,LMG 2485,NCPPB 453,PDDCC 6427,CFBP 1200,BCRC 13211,CCRC 13211,DSM 18054

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Dickeya

Species Dickeya dianthicola

Full scientific name Dickeya dianthicola Samson et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29987	negative	2 µm	0.75 µm	rod-shaped
125438	negative					99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7273	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7273	positive	growth	30
29987	positive	optimum	36

Physiology and metabolism

Oxygen tolerance

29987

Oxygen tolerancefacultative anaerobe

Observation

29987

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
29987	22599 ChEBI	arabinose	+	carbon source
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
29987	17234 ChEBI	glucose	+	carbon source
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
29987	25115 ChEBI	malate	+	carbon source
29987	15792 ChEBI	malonate	+	carbon source
29987	29864 ChEBI	mannitol	+	carbon source
29987	37684 ChEBI	mannose	+	carbon source
29987	28053 ChEBI	melibiose	+	carbon source
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
29987	17268 ChEBI	myo-inositol	+	carbon source
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
29987	17632 ChEBI	nitrate	+	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
29987	16634 ChEBI	raffinose	+	carbon source
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
29987	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
29987	35581 ChEBI	indole		+
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7273	+	+	-	-	+	-	-	-	+	+	-	+	+	-	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7273	Dianthus caryophyllus	Dianthus caryophyllus	United Kingdom	GBR	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
7273		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	DDI453_v1.0 assembly for Dickeya dianthicola NCPPB 453	chromosome	GCA_000365305	1223568.13	2551306377	1223568	77.39
124043	ASM5178382v1 assembly for Dickeya dianthicola CFBP 1200	contig	GCA_051783825			204039	62.97

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Dickeya dianthicola strain NCPPB 453 16S-23S ribosomal RNA intergenic spacer, partial sequence	KC844729	339		204039
7273	Dickeya dianthicola strain CFBP 1200 16S ribosomal RNA gene, partial sequence	AF520708	1427		204039

GC content

29987

GC-content (mol%)59.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: DDI453_v1.0 assembly for Dickeya dianthicola NCPPB 453
BV-BRC: 1223568.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	79.98	no
125439	gram_stain	BacteriaNetⓘ	negative	74.77	no
125439	motility	BacteriaNetⓘ	yes	68.79	no
125439	spore_formation	BacteriaNetⓘ	no	89.93	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dickeya dianthicola NCPPB 453 NCPPB 453
NCBI: GCA_000365305.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	96.28	yes
125438	aerobic	aerobicⓘ	no	74.59	no
125438	spore-forming	spore-formingⓘ	no	88.51	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	78.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Species of Dickeya and Pectobacterium Isolated during an Outbreak of Blackleg and Soft Rot of Potato in Northeastern and North Central United States.	Curland RD, Mainello A, Perry KL, Hao J, Charkowski AO, Bull CT, McNally RR, Johnson SB, Rosenzweig N, Secor GA, Larkin RP, Gugino BK, Ishimaru CA.	Microorganisms	10.3390/microorganisms9081733	2021
	Detection of Potato Pathogen Clavibacter sepedonicus by CRISPR/Cas13a Analysis of NASBA Amplicons.	Khmeleva SA, Kurbatov LK, Ptitsyn KG, Timoshenko OS, Morozova DD, Suprun EV, Radko SP, Lisitsa AV.	Int J Mol Sci	10.3390/ijms252212218	2024
	The Great Five-an artificial bacterial consortium with antagonistic activity towards Pectobacterium spp. and Dickeya spp.: formulation, shelf life, and the ability to prevent soft rot of potato in storage.	Maciag T, Krzyzanowska DM, Jafra S, Siwinska J, Czajkowski R.	Appl Microbiol Biotechnol	10.1007/s00253-020-10550-x	2020
Enzymology	Specific detection of Pectobacterium carotovorum by loop-mediated isothermal amplification.	Yasuhara-Bell J, Marrero G, De Silva A, Alvarez AM.	Mol Plant Pathol	10.1111/mpp.12378	2016
	Novel Tetraplex Quantitative PCR Assays for Simultaneous Detection and Identification of Xylella fastidiosa Subspecies in Plant Tissues.	Dupas E, Briand M, Jacques MA, Cesbron S.	Front Plant Sci	10.3389/fpls.2019.01732	2019
	First Report of Filamentous Phages Isolated from Tunisian Orchards to Control Erwinia amylovora.	Akremi I, Holtappels D, Brabra W, Jlidi M, Hadj Ibrahim A, Ben Ali M, Fortuna K, Ahmed M, Meerbeek BV, Rhouma A, Lavigne R, Ben Ali M, Wagemans J.	Microorganisms	10.3390/microorganisms8111762	2020
Enzymology	Pseudomonas syringae Socially Induced Swimming Motility Requires the Molybdenum Cofactor.	Yang Z, Swingle B.	Mol Microbiol	10.1111/mmi.15378	2025
	Surviving the Potato Stems: Differences in Genes Required for Fitness by Dickeya dadantii and Dickeya dianthicola.	Gonzalez-Tobon J, Helmann T, Stodghill P, Filiatrault M.	Phytopathology	10.1094/phyto-09-23-0351-kc	2024
	Reproducible Quantitative Trait Loci for Resistance to Soft Rot Caused by Dickeya dianthicola Derived from the Wild Potato Solanum microdontum (PI 458355) Are Located on Chromosomes 1, 3, and 5.	Fenstemaker S, Ma X, Bamberg J, Swingle B.	Phytopathology	10.1094/phyto-05-23-0158-r	2024
	Asteraceae weeds may be an alternative host of Dickeya dianthicola, a causal agent of potato blackleg in Japan	Aono Y, Nakayama T, Ogawa S, Fujimoto T, Ohki T, Oka N, Maoka T.	Eur J Plant Pathol	10.1007/s10658-022-02474-1	2022
	Identification of Resistance to Dickeya dianthicola Soft Rot in Solanum microdontum	Ma X, Lofton L, Bamberg J, Swingle B.	Am J Potato Res	10.1007/s12230-021-09859-8	2022
	Pangenomic Analysis of Dickeya dianthicola Strains Related to the Outbreak of Blackleg and Soft Rot of Potato in the United States.	Ge T, Jiang H, Tan EH, Johnson SB, Larkin RP, Charkowski AO, Secor G, Hao J.	Plant Dis	10.1094/pdis-03-21-0587-re	2021
Genetics	Complete Genome Sequence Resource for the Necrotrophic Plant-Pathogenic Bacterium Dickeya dianthicola 67-19 Isolated From New Guinea Impatiens.	Liu Y, Helmann TC, Stodghill P, Filiatrault MJ.	Plant Dis	10.1094/pdis-09-20-1968-a	2021
	First Report of Dickeya dianthicola Causing Blackleg on New Guinea Impatiens (Impatiens hawkeri) in New York State, U.S.A.	Liu Y, Vasiu S, Daughtrey M, Filiatrault MJ.	Plant Dis		2021
	Genetic diversity of potato blackleg pathogens, Pectobacterium wasabiae, P. carotovorum subsp. brasiliense and Dickeya dianthicola in Japan by rep-PCR fingerprinting	Nakayama T, Yasuoka S, Ozawa T, Aono Y, Ushio Y, Fujimoto T, Ohki T, Maoka T.	Eur J Plant Pathol	10.1007/s10658-021-02216-9	2021
	Occurrence and Identification of Pectobacterium carotovorum subsp. brasiliensis and Dickeya dianthicola Causing Blackleg in Some Potato Fields in Serbia.	Markovic S, Stankovic S, Jelusic A, Ilicic R, Kosovac A, Postic D, Popovic T.	Plant Dis	10.1094/pdis-05-20-1076-re	2021
Phylogeny	Genotyping Dickeya dianthicola Causing Potato Blackleg and Soft Rot Outbreak Associated With Inoculum Geography in the United States.	Ge T, Jiang H, Johnson SB, Larkin RP, Charkowski AO, Secor G, Hao J.	Plant Dis	10.1094/pdis-10-20-2138-re	2021
Genetics	Analysis of soft rot Pectobacteriaceae population diversity in US potato growing regions between 2015 and 2022.	Ma X, Zhang X, Stodghill P, Rioux R, Shrestha S, Babler B, Rivedal H, Frost K, Hao J, Secor G, Swingle B.	Front Microbiol	10.3389/fmicb.2024.1403121	2024
	Highly Targeted Detection of Priority Phytopathogen Pectobacterium brasiliense: From Obtaining Polyclonal Antibodies to Development and Approbation of Enzyme-Linked Immunoassay and Lateral Flow Immunoassay.	Safenkova IV, Galushka PA, Varitsev YA, Kamionskaya MV, Drenova NV, Vasilyeva AA, Zherdev AV, Uskov AI, Dzantiev BB.	Microorganisms	10.3390/microorganisms12122436	2024
Genetics	The Broad Host Range Plant Pathogen Dickeya dianthicola Shows a High Genetic Diversity.	Pedron J, van der Wolf JM, Portier P, Caullireau E, Van Gijsegem F.	Microorganisms	10.3390/microorganisms10051024	2022
	Simple and sensitive BIO-PCR detection of potato blackleg pathogens from stem, tuber, and soil samples	Aono Y, Nakayama T, Ozawa T, Ushio Y, Yasuoka S, Fujimoto T, Ohki T, Oka N, Maoka T.	J Gen Plant Pathol	10.1007/s10327-021-00997-9	2021
	Potato Seed Decay and Stand Loss is Not Caused by Dickeya Spread during Cutting and Handling of Seed Potatoes	Secor G, Rivera-Varas V, Johnson S, Greiner B, Larson K, Charkowski A, Karim S.	Am J Potato Res	10.1007/s12230-020-09818-9	2021
	The occurrence of bacteria from different species of Pectobacteriaceae on seed potato plantations in Poland	Motyka-Pomagruk A, Zoledowska S, Sledz W, Lojkowska E.	Eur J Plant Pathol	10.1007/s10658-020-02163-x	2021
Enzymology	Comparative genomics reveals signature regions used to develop a robust and sensitive multiplex TaqMan real-time qPCR assay to detect the genus Dickeya and Dickeya dianthicola.	Dobhal S, Boluk G, Babler B, Stulberg MJ, Rascoe J, Nakhla MK, Chapman TA, Crockford AB, Melzer MJ, Alvarez AM, Arif M.	J Appl Microbiol	10.1111/jam.14579	2020
	Bacteriophages as a Strategy to Protect Potato Tubers against Dickeya dianthicola and Pectobacterium carotovorum Soft Rot.	Beno F, Horsakova I, Kmoch M, Petrzik K, Kratka G, Sevcik R.	Microorganisms	10.3390/microorganisms10122369	2022
	Development of the Automated Primer Design Workflow Uniqprimer and Diagnostic Primers for the Broad-Host-Range Plant Pathogen Dickeya dianthicola.	Karim S, McNally RR, Nasaruddin AS, DeReeper A, Mauleon RP, Charkowski AO, Leach JE, Ben-Hur A, Triplett LR.	Plant Dis	10.1094/pdis-10-18-1819-re	2019
	Interaction between Dickeya dianthicola and Pectobacterium parmentieri in Potato Infection under Field Conditions.	Ge T, Ekbataniamiri F, Johnson SB, Larkin RP, Hao J.	Microorganisms	10.3390/microorganisms9020316	2021
	First Report of Dickeya dianthicola Causing Blackleg on Potato in Texas	Nasaruddin AS, Charkowski AO, Babler BN, Perna NT, Glasner JD.	Plant Dis	10.1094/pdis-01-19-0024-pdn	2019
	Genome-Wide Identification of Genes Important for Growth of Dickeya dadantii and Dickeya dianthicola in Potato (Solanum tuberosum) Tubers.	Helmann TC, Filiatrault MJ, Stodghill PV.	Front Microbiol	10.3389/fmicb.2022.778927	2022
	First Report of Bacterial Root Rot, Caused by Dickeya dadantii, on Sweetpotato (Ipomoea batatas) in North Carolina	Stahr MN, Butler S, Huerta AI, Ritchie DF, Quesada-Ocampo LM.	Plant Dis	10.1094/pdis-03-20-0568-pdn	2020
	First Report of Dickeya dianthicola as a Causal Agent of Bacterial Soft Rot of Potato in Hawaii	Boluk G, `Arif MM.	Plant Dis	10.1094/pdis-11-18-2094-pdn	2019
	Species Diversity of Dickeya and Pectobacterium Causing Potato Blackleg Disease in Pakistan.	Sarfraz S, Sahi ST, Oulghazi S, Riaz K, Rajput NA, Atiq M, Tufail MR, Hameed A, Faure D.	Plant Dis	10.1094/pdis-08-19-1743-re	2020
	Tailocin-Mediated Interactions Among Soft Rot Pectobacteriaceae.	Borowicz M, Krzyzanowska DM, Sobolewska M, Narajczyk M, Mruk I, Czaplewska P, Pedron J, Barny MA, Canto PY, Dziadkowiec J, Czajkowski R.	Mol Ecol	10.1111/mec.17728	2025
	First Report of Dickeya dianthicola Causing Blackleg and Soft Rot on Potato (Solanum tuberosum) in New Jersey, U.S.A.	Patel N, Baldwin AC, Patel RD, Kobayashi DY, Wyenandt CA.	Plant Dis	10.1094/pdis-05-18-0775-pdn	2019
	Common and distinctive adaptive traits expressed in Dickeya dianthicola and Dickeya solani pathogens when exploiting potato plant host.	Raoul des Essarts Y, Pedron J, Blin P, Van Dijk E, Faure D, Van Gijsegem F.	Environ Microbiol	10.1111/1462-2920.14519	2019
	Pathogenicity and Relative Abundance of Dickeya and Pectobacterium Species in Switzerland: An Epidemiological Dichotomy.	de Werra P, Debonneville C, Kellenberger I, Dupuis B.	Microorganisms	10.3390/microorganisms9112270	2021
	Draft Genome Sequences of Two Dickeya dianthicola Isolates from Potato.	Cai W, Srivastava SK, Stulberg MJ, Nakhla MK, Rascoe J.	Genome Announc	10.1128/genomea.00115-18	2018
	Genetic Diversity of Pectobacterium spp. on Potato in Serbia.	Loc M, Milosevic D, Ivanovic Z, Ignjatov M, Budakov D, Grahovac J, Grahovac M.	Microorganisms	10.3390/microorganisms10091840	2022
	First Report of Bacterial Soft Rot and Blackleg on Potato Caused by Pectobacterium parmentieri in Hawaii	Arizala D, Dobhal S, Paudel S, Gunarathne S, Boluk G, `Arif MM.	Plant Dis	10.1094/pdis-09-19-1894-pdn	2020
	Biochemical, physiological, and molecular characterization of Dickeya dianthicola (formerly named Erwinia chrysanthemi) causing potato blackleg disease in Japan	Fujimoto T, Yasuoka S, Aono Y, Nakayama T, Ohki T, Sayama M, Maoka T.	J Gen Plant Pathol	10.1007/s10327-018-0772-9	2018
Genetics	First detection of Dickeya fangzhongdai in Italy: double-edged role from virulent on vegetables to potent VOC-mediated anti-Xylella fastidiosa activity	Sabri M, El Handi K, Mektoubi K, Trani A, Cara O, Elbeaino T.	Front Microbiol		2025
	Complete Genome Sequences of the Plant Pathogens Dickeya solani RNS 08.23.3.1.A and Dickeya dianthicola RNS04.9.	Khayi S, Blin P, Chong TM, Robic K, Chan KG, Faure D.	Genome Announc	10.1128/genomea.01447-17	2018
	Conception and Optimization of Extraction-Free Loop-Mediated Isothermal Amplification Detection of Dry Rot Fungus Serpula lacrymans.	Lapointe V, Roy M, Rose S, Boutin Y, Couture F.	ACS Omega	10.1021/acsomega.4c05509	2024
	Marker discovery in the large.	Vieira Mourato B, Tsers I, Denker S, Klotzl F, Haubold B.	Bioinform Adv	10.1093/bioadv/vbae113	2024
	First Report of Pectobacterium carotovorum subsp. brasiliense Causing Blackleg and Stem Rot Disease of Potato in Russia	Voronina MV, Kabanova AP, Shneider MM, Korzhenkov AA, Toschakov SV, Miroshnikov KK, Miroshnikov KA, Ignatov AN.	Plant Dis	10.1094/pdis-03-18-0456-pdn	2019
	Wide-genome selection of lactic acid bacteria harboring genes that promote the elimination of antinutritional factors.	Pham HH, Kim DH, Nguyen TL.	Front Plant Sci	10.3389/fpls.2023.1145041	2023
	Dickeya Manipulates Multiple Quorum Sensing Systems to Control Virulence and Collective Behaviors.	Liu F, Hu M, Zhang Z, Xue Y, Chen S, Hu A, Zhang LH, Zhou J.	Front Plant Sci	10.3389/fpls.2022.838125	2022
Enzymology	Matrix approach to the simultaneous detection of multiple potato pathogens by real-time PCR.	Nikitin MM, Statsyuk NV, Frantsuzov PA, Dzhavakhiya VG, Golikov AG.	J Appl Microbiol	10.1111/jam.13686	2018
	Development of a lateral flow immunoassay for rapid diagnosis of potato blackleg caused by Dickeya species.	Safenkova IV, Zaitsev IA, Varitsev YA, Byzova NA, Drenova NV, Zherdev AV, Dzantiev BB.	Anal Bioanal Chem	10.1007/s00216-016-0140-6	2017
	Development of a robust, field-deployable loop-mediated isothermal amplification (LAMP) assay for specific detection of potato pathogen Dickeya dianthicola targeting a unique genomic region.	Ocenar J, Arizala D, Boluk G, Dhakal U, Gunarathne S, Paudel S, Dobhal S, Arif M.	PLoS One	10.1371/journal.pone.0218868	2019
Genetics	Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco.	Oulghazi S, Moumni M, Khayi S, Robic K, Sarfraz S, Lopez-Roques C, Vandecasteele C, Faure D.	Microorganisms	10.3390/microorganisms8060895	2020
	The effect of temperature on the phenotypic features and the maceration ability of Dickeya solani strains isolated in Finland, Israel and Poland	Golanowska M, Kielar J, Lojkowska E.	Eur J Plant Pathol	10.1007/s10658-016-1044-1	2017
	First Report of Stem Rot on Potato Caused by Dickeya chrysanthemi in Minnesota	McNally RR, Curland RD, Webster BT, Robinson AP, Ishimaru CA.	Plant Dis	10.1094/pdis-07-17-0966-pdn	2018
	Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis	Parkinson N, Pritchard L, Bryant R, Toth I, Elphinstone J.	Eur J Plant Pathol	10.1007/s10658-014-0523-5	2015
	Genome Sequence of the Potato Plant Pathogen Dickeya dianthicola Strain RNS04.9.	Raoul des Essarts Y, Mondy S, Helias V, Faure D.	Genome Announc	10.1128/genomea.00581-15	2015
	Unlocking expanded flagellin perception through rational receptor engineering.	Li T, Jarquin Bolanos E, Stevens DM, Sha H, Prigozhin DM, Coaker G.	Nat Plants	10.1038/s41477-025-02049-y	2025
	Efficacy of Soft-Rot Disease Biocontrol Agents in the Inhibition of Production Field Pathogen Isolates.	Cigna J, Robic K, Dewaegeneire P, Helias V, Beury A, Faure D.	Microorganisms	10.3390/microorganisms11020372	2023
	Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia.	Jelusic A, Scortichini M, Markovic S, Mitrovic P, Ilicic R, Stankovic S, Popovic Milovanovic T.	Microorganisms	10.3390/microorganisms11082122	2023
Phylogeny	Characterization of Dickeya and Pectobacterium species by capillary electrophoretic techniques and MALDI-TOF MS.	Salplachta J, Kubesova A, Horky J, Matouskova H, Tesarova M, Horka M.	Anal Bioanal Chem	10.1007/s00216-015-8920-y	2015
	First Report of Dickeya dianthicola Causing Blackleg on Potato (Solanum tuberosum) in Bulgaria.	Bobev SG, Van Vaerenbergh J, Maes M.	Plant Dis	10.1094/pdis-02-13-0147-pdn	2014
	Field Use of Protective Bacteriophages against Pectinolytic Bacteria of Potato.	Petrzik K, Vacek J, Kmoch M, Binderova D, Brazdova S, Lenz O, Sevcik R.	Microorganisms	10.3390/microorganisms11030620	2023
Pathogenicity	A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates.	Pedersen JS, Carstens AB, Rothgard MM, Roy C, Viry A, Papudeshi B, Kot W, Hille F, Franz CMAP, Edwards R, Hansen LH.	Virus Res	10.1016/j.virusres.2024.199435	2024
	Draft Genome Sequences of Four Dickeya dianthicola and Four Dickeya solani Strains.	Pritchard L, Humphris S, Baeyen S, Maes M, Van Vaerenbergh J, Elphinstone J, Saddler G, Toth I.	Genome Announc	10.1128/genomea.00087-12	2013
	May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot Pectobacteriaceae: Pectobacterium spp. and Dickeya spp.	Czajkowski R.	Front Microbiol	10.3389/fmicb.2019.00138	2019
	Soft rot of root chicory in Hokkaido and its causal bacteria	Lan WW, Nishiwaki Y, Akino S, Kondo N.	J Gen Plant Pathol	10.1007/s10327-013-0440-z	2013
Phylogeny	Differences in the constituents of bacterial microbiota of soils collected from two fields of diverse potato blackleg and soft rot diseases incidences, a case study.	Babinska-Wensierska W, Motyka-Pomagruk A, Fondi M, Misztak AE, Mengoni A, Lojkowska E.	Sci Rep	10.1038/s41598-024-69213-w	2024
	Profiling of Volatile Organic Compounds from Four Plant Growth-Promoting Rhizobacteria by SPME-GC-MS: A Metabolomics Study.	Mhlongo MI, Piater LA, Dubery IA.	Metabolites	10.3390/metabo12080763	2022
Metabolism	A Rare Thioquinolobactin Siderophore Present in a Bioactive Pseudomonas sp. DTU12.1.	Sazinas P, Hansen ML, Aune MI, Fischer MH, Jelsbak L.	Genome Biol Evol	10.1093/gbe/evz267	2019
	Genome Sequence of the Emerging Plant Pathogen Dickeya solani Strain RNS 08.23.3.1A.	Khayi S, Mondy S, Beury-Cirou A, Moumni M, Helias V, Faure D.	Genome Announc	10.1128/genomea.01270-13	2014
Enzymology	Polyamine signaling communications play a key role in regulating the pathogenicity of Dickeya fangzhongdai.	Xie C, Gu W, Chen Z, Liang Z, Huang S, Zhang L-H, Chen S.	Microbiol Spectr	10.1128/spectrum.01965-23	2023
	Pseudomonas PA14H7: Identification and Quantification of the 7-Hydroxytropolone Iron Complex as an Active Metabolite against Dickeya, the Causal Agent of Blackleg on the Potato Plant.	Munier-Lepinay E, Mathiron D, Quero A, Khelifa M, Laclef S, Pilard S.	Molecules	10.3390/molecules28176207	2023
Enzymology	Biocontrol of the Potato Blackleg and Soft Rot Diseases Caused by Dickeya dianthicola.	Raoul des Essarts Y, Cigna J, Quetu-Laurent A, Caron A, Munier E, Beury-Cirou A, Helias V, Faure D.	Appl Environ Microbiol	10.1128/aem.02525-15	2016
Phylogeny	Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae.	Djurhuus AM, Carstens AB, Neve H, Kot W, Hansen LH.	Phage (New Rochelle)	10.1089/phage.2020.0039	2020
	Potato Pathogens in Russia's Regions: An Instrumental Survey with the Use of Real-Time PCR/RT-PCR in Matrix Format.	Malko A, Frantsuzov P, Nikitin M, Statsyuk N, Dzhavakhiya V, Golikov A.	Pathogens	10.3390/pathogens8010018	2019
	An enrichment microsphere immunoassay for the detection of Pectobacterium atrosepticum and Dickeya dianthicola in potato tuber extracts	Peters J, Sledz W, Bergervoet JHW, van der Wolf JM.	Eur J Plant Pathol	10.1007/s10658-006-9068-6	2007
Genetics	Isolation of haloalkaliphilic fungi from Lake Magadi in Kenya.	Orwa P, Mugambi G, Wekesa V, Mwirichia R.	Heliyon	10.1016/j.heliyon.2019.e02823	2020
	Contribution of Hydrogen Cyanide to the Antagonistic Activity of Pseudomonas Strains Against Phytophthora infestans.	Anand A, Chinchilla D, Tan C, Mene-Saffrane L, L'Haridon F, Weisskopf L.	Microorganisms	10.3390/microorganisms8081144	2020
	A horizontally acquired expansin gene increases virulence of the emerging plant pathogen Erwinia tracheiphila.	Rocha J, Shapiro LR, Kolter R.	Sci Rep	10.1038/s41598-020-78157-w	2020
	Environmental Bacteriophages of the Emerging Enterobacterial Phytopathogen, Dickeya solani, Show Genomic Conservation and Capacity for Horizontal Gene Transfer between Their Bacterial Hosts.	Day A, Ahn J, Fang X, Salmond GPC.	Front Microbiol	10.3389/fmicb.2017.01654	2017
	Dissimilar gene repertoires of Dickeya solani involved in the colonization of lesions and roots of Solanum tuberosum.	Robic K, Munier E, Effantin G, Lachat J, Naquin D, Gueguen E, Faure D.	Front Plant Sci	10.3389/fpls.2023.1154110	2023
	Isolation and Characterization of Pectobacterium Phage vB_PatM_CB7: New Insights into the Genus Certrevirus.	Buttimer C, Lynch C, Hendrix H, Neve H, Noben JP, Lavigne R, Coffey A.	Antibiotics (Basel)	10.3390/antibiotics9060352	2020
Phylogeny	Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'.	Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A.	Viruses	10.3390/v10080394	2018
Genetics	Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB.	Buttimer C, Hendrix H, Oliveira H, Casey A, Neve H, McAuliffe O, Ross RP, Hill C, Noben JP, O'Mahony J, Lavigne R, Coffey A.	Front Microbiol	10.3389/fmicb.2017.00044	2017
	Simultaneous detection of major blackleg and soft rot bacterial pathogens in potato by multiplex polymerase chain reaction.	Potrykus M, Sledz W, Golanowska M, Slawiak M, Binek A, Motyka A, Zoledowska S, Czajkowski R, Lojkowska E.	Ann Appl Biol	10.1111/aab.12156	2014
	The Anti-Phytophthora Effect of Selected Potato-Associated Pseudomonas Strains: From the Laboratory to the Field.	Guyer A, De Vrieze M, Bonisch D, Gloor R, Musa T, Bodenhausen N, Bailly A, Weisskopf L.	Front Microbiol	10.3389/fmicb.2015.01309	2015
	The rice foot rot pathogen Dickeya zeae alters the in-field plant microbiome.	Bez C, Esposito A, Thuy HD, Nguyen Hong M, Vale G, Licastro D, Bertani I, Piazza S, Venturi V.	Environ Microbiol	10.1111/1462-2920.15726	2021
Phylogeny	Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.	Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A.	Pharmaceuticals (Basel)	10.3390/ph11020045	2018
	Five Plant Natural Products Are Potential Type III Secretion System Inhibitors to Effectively Control Soft-Rot Disease Caused by Dickeya.	Hu A, Hu M, Chen S, Xue Y, Tan X, Zhou J.	Front Microbiol	10.3389/fmicb.2022.839025	2022
	Gel-Forming Soil Conditioners of Combined Action: Field Trials in Agriculture and Urban Landscaping.	Smagin AV, Sadovnikova NB, Belyaeva EA, Krivtsova VN, Shoba SA, Smagina MV.	Polymers (Basel)	10.3390/polym14235131	2022
Metabolism	Carbon catabolite repression in pectin digestion by the phytopathogen Dickeya dadantii.	Martis B S, Droux M, Nasser W, Reverchon S, Meyer S.	J Biol Chem	10.1016/j.jbc.2021.101446	2022
	Detection of blueberry stunt phytoplasma in Eastern Canada using cpn60-based molecular diagnostic assays.	Hammond C, Perez-Lopez E, Town J, Vincent C, Moreau D, Dumonceaux T.	Sci Rep	10.1038/s41598-021-01439-4	2021
	Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani.	Day A, Ahn J, Salmond GPC.	Front Microbiol	10.3389/fmicb.2018.02169	2018
Genetics	Discovery of an Antarctic Ascidian-Associated Uncultivated Verrucomicrobia with Antimelanoma Palmerolide Biosynthetic Potential.	Murray AE, Lo CC, Daligault HE, Avalon NE, Read RW, Davenport KW, Higham ML, Kunde Y, Dichosa AEK, Baker BJ, Chain PSG.	mSphere	10.1128/msphere.00759-21	2021
	Insight into biodiversity of the recently rearranged genus Dickeya.	Hugouvieux-Cotte-Pattat N, Pedron J, Van Gijsegem F.	Front Plant Sci	10.3389/fpls.2023.1168480	2023
	T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'.	Adriaenssens EM, Van Vaerenbergh J, Vandenheuvel D, Dunon V, Ceyssens PJ, De Proft M, Kropinski AM, Noben JP, Maes M, Lavigne R.	PLoS One	10.1371/journal.pone.0033227	2012
Phylogeny	Complete genomic sequence and phylogenomics analysis of Agrobacterium strain AB2/73: a new Rhizobium species with a unique mega-Ti plasmid.	Hooykaas MJG, Hooykaas PJJ.	BMC Microbiol	10.1186/s12866-021-02358-0	2021
Metabolism	Biosynthesis of the antifungal haterumalide, oocydin A, in Serratia, and its regulation by quorum sensing, RpoS and Hfq.	Matilla MA, Leeper FJ, Salmond GP.	Environ Microbiol	10.1111/1462-2920.12839	2015
	Irreplaceable Role of Amendment-Based Strategies to Enhance Soil Health and Disease Suppression in Potato Production.	Hao J, Ashley K.	Microorganisms	10.3390/microorganisms9081660	2021
Enzymology	Soft Rot Enterobacteriaceae Are Carried by a Large Range of Insect Species in Potato Fields.	Rossmann S, Dees MW, Perminow J, Meadow R, Brurberg MB.	Appl Environ Microbiol	10.1128/aem.00281-18	2018
Metabolism	Pseudomonas strains naturally associated with potato plants produce volatiles with high potential for inhibition of Phytophthora infestans.	Hunziker L, Bonisch D, Groenhagen U, Bailly A, Schulz S, Weisskopf L.	Appl Environ Microbiol	10.1128/aem.02999-14	2015
	Synthetic gel structures in soils for sustainable potato farming.	Smagin A, Sadovnikova N, Smagina M.	Sci Rep	10.1038/s41598-019-55205-8	2019
	Seasonality, shelf life and storage atmosphere are main drivers of the microbiome and E. coli O157:H7 colonization of post-harvest lettuce cultivated in a major production area in California.	Leonard SR, Simko I, Mammel MK, Richter TKS, Brandl MT.	Environ Microbiome	10.1186/s40793-021-00393-y	2021
Genetics	Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani.	Motyka-Pomagruk A, Zoledowska S, Misztak AE, Sledz W, Mengoni A, Lojkowska E.	BMC Genomics	10.1186/s12864-020-06863-w	2020
Metabolism	Lon Protease Is Important for Growth Under Stressful Conditions and Pathogenicity of the Phytopathogen, Bacterium Dickeya solani.	Figaj D, Czaplewska P, Przepiora T, Ambroziak P, Potrykus M, Skorko-Glonek J.	Int J Mol Sci	10.3390/ijms21103687	2020
Phylogeny	Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates.	Alic S, Pedron J, Dreo T, Van Gijsegem F.	BMC Genomics	10.1186/s12864-018-5332-3	2019
	Bacteriophages and Bacterial Plant Diseases.	Buttimer C, McAuliffe O, Ross RP, Hill C, O'Mahony J, Coffey A.	Front Microbiol	10.3389/fmicb.2017.00034	2017
Phylogeny	Sequence diversity in the Dickeya fliC gene: phylogeny of the Dickeya genus and TaqMan® PCR for 'D. solani', new biovar 3 variant on potato in Europe.	Van Vaerenbergh J, Baeyen S, De Vos P, Maes M.	PLoS One	10.1371/journal.pone.0035738	2012
	First Report of Dickeya dianthicola causing blackleg on New Guinea Impatiens (Impatiens hawkeri) in New York State, USA.	Liu Y, Vasiu S, Daughtrey ML, Filiatrault M	Plant Dis	10.1094/PDIS-09-20-2020-PDN	2020
	Bacterial Stem Rot of Oncidium Orchid Caused by a Dickeya sp. (ex Pectobacterium chrysanthemi) in Mainland China.	Li B, Qiu W, Fang Y, Xie GL	Plant Dis	10.1094/PDIS-93-5-0552B	2009
Phylogeny	Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov.	Samson R, Legendre JB, Christen R, Saux MF, Achouak W, Gardan L	Int J Syst Evol Microbiol	10.1099/ijs.0.02791-0	2005

References

#7273	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18054
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#26354	IJSEM 1415 2005 ( DOI 10.1099/ijs.0.02791-0 , PubMed 16014461 )
#29987	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26354
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dickeya dianthicola (DSM 18054, CFBP 1200, ICMP 6427)

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