Dickeya dianthicola CN 26 | Type strain | DSM 18054, CFBP 1200, ICMP 6427, LMG 2485, NCPPB 453

Strain identifier

BacDive ID: 4351

Type strain:

Species: Dickeya dianthicola

Strain Designation: CN 26

Culture col. no.: DSM 18054, CFBP 1200, ICMP 6427, LMG 2485, NCPPB 453

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #7273]	Domain	Bacteria
[Ref.: #7273]	Phylum	Proteobacteria
[Ref.: #7273]	Class	Gammaproteobacteria
[Ref.: #7273]	Order	Enterobacteriales, not validated
[Ref.: #7273]	Family	Pectobacteriaceae
[Ref.: #7273]	Genus	Dickeya
[Ref.: #7273]	Species	Dickeya dianthicola
[Ref.: #7273]	Full Scientific Name	Dickeya dianthicola Samson et al. 2005
[Ref.: #7273]	Strain Designation	CN 26
[Ref.: #7273]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2235
[Ref.: #20215]	Family	Pectobacteriaceae		Int. J. Syst. Evol. Microbiol. 66:5575*
[Ref.: #20215]	Genus	Dickeya	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 55:1415*
[Ref.: #20215]	Species	Dickeya dianthicola	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 55:1415*
[Ref.: #20215]	Full Scientific Name	Dickeya dianthicola Samson et al. 2005

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #29987]	Gram stain	negative
[Ref.: #29987]	Cell length	2 µm
[Ref.: #29987]	Cell width	0.75 µm
[Ref.: #29987]	Cell shape	rod-shaped
[Ref.: #29987]	Motility	yes

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7273]	7429	+	+	-	-	+	-	-	-	+	+	-	+	+	-	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

	Metabolite production	Metabolite	Production
[Ref.: #29987]		Indole	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29987]		Indole	+

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29987]	Arabinose	+	carbon source
[Ref.: #29987]	Glucose	+	carbon source
[Ref.: #29987]	Malic acid	+	carbon source
[Ref.: #29987]	Malonic acid	+	carbon source
[Ref.: #29987]	Mannitol	+	carbon source
[Ref.: #29987]	Mannose	+	carbon source
[Ref.: #29987]	Melibiose	+	carbon source
[Ref.: #29987]	myo-Inositol	+	carbon source
[Ref.: #29987]	Nitrate	+	reduction
[Ref.: #29987]	Raffinose	+	carbon source

[Ref.: #29987]

Observation

aggregates in chains

[Ref.: #29987]

Oxygen tolerance

facultative anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #7273]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a), 30°C

[Ref.: #7273]

Culture medium growth

[Ref.: #7273]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7273]			growth	30 ̊C
[Ref.: #29987]			optimum	36 ̊C

[Ref.: #7273]	Temperature range	mesophilic
[Ref.: #29987]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #7273]

Sample type/isolated from

Dianthus caryophyllus

[Ref.: #7273]

Host species

Dianthus caryophyllus

[Ref.: #7273]

Country

United Kingdom

[Ref.: #7273]

Continent

Europe

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #7273]	Pathogenicity (plant)	yes
[Ref.: #7273]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #29987]

GC-content

59.5 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 recombinase A (recA) gene, partial cds	FJ216971		481	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain LMG 2485T ATP synthase beta subunit (atpD) gene, partial cds	JF311535		642	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain LMG 2485T DNA gyrase (gyrB) gene, partial cds	JF311648		745	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain LMG 2485T initiation translation factor 2 (infB) gene, partial cds	JF311761		615	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain LMG 2485T RNA polymerase beta subunit (rpoB) gene, partial cds	JF311873		637	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain LMG 2485 flagellin (fliC) gene, partial cds	JN617628		575	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 DnaJ gene, partial cds	JX273686		483	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 glyceraldehyde 3-phosphate dehydrogenase (gapA) gene, partial cds	JX273697		431	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain LMG 2485 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds	JX392873		449	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 DNA polymerase III subunits gamma and tau (dnaX) gene, partial cds	KC844486		400	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 DNA polymerase III subunit beta (dnaN) gene, partial cds	KC844513		308	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 GTP-binding protein chain elongation factor EF-G (fusA) gene, partial cds	KC844540		314	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds	KC844567		363	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 DNA gyrase subunit A (gyrA) gene, partial cds	KC844594		388	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 adenylosuccinate synthetase (purA) gene, partial cds	KC844621		320	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 recombinase A (recA) gene, partial cds	KC844648		425	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 ribosomal protein L2 (rplB) gene, partial cds	KC844675		349	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 RNA polymerase sigma subunit (rpoS) gene, partial cds	KC844702		305	204039	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain NCPPB 453 16S-23S ribosomal RNA intergenic spacer, partial sequence	KC844729	16S	339	204039	*
[Ref.: #7273]	Marker Gene (GenBank Direct submission)	Dickeya dianthicola strain CFBP 1200 16S ribosomal RNA gene, partial sequence	AF520708		1427	204039

Availability in culture collectionsStrain availability

[Ref.: #7273]

Culture collection no.

DSM 18054, CFBP 1200, ICMP 6427, LMG 2485, NCPPB 453

[Ref.: #7273]

Strain history

<- CFBP <- R. A. Lelliott; CN 26

[Ref.: #20218]

Associated Passport(s) in StrainInfo

691251, 278264, 42892, 42894, 42895

References

#7273

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18054

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29987

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #26354 (see below)

#26354

IJSEM 1415 2005 ( DOI 10.1099/ijs.0.02791-0 )

* These References are textmined

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