Cedecea lapagei (CCUG 12371, NCTC 11466, LMG 7863)

Name: Cedecea lapagei (CCUG 12371, NCTC 11466, LMG 7863)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4321

Type strain

Strain Designation 004, 0485-76

Culture col. no. CCUG 12371 NCTC 11466 LMG 7863 JCM 1684 DSM 4587 7 more

NCBI tax ID(s) 1354257 158823

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- CIP <- P.A.D. Grimont; 004 JCM <-- Y. Kosako 82079 <-- R. Sakazaki 275 <-- CDC 485-76 <-- Canadian CDC. CIP <- 1980, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 14-79, Enterobacter agglomerans G1 <- CDC: strain 0485-76

Links

Cedecea lapagei 004 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from human throat.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13608

LMG 7863,ATCC 33432,CCUG 12371,JCM 1684,NCTC 11466,DSM 4587,CCRC 14816,BCRC 14816,CIP 80.35,CNCTC 6265

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Cedecea

Species Cedecea lapagei

Full scientific name Cedecea lapagei Grimont et al. 1981

BacDive ID	Other strains from **Cedecea lapagei** (6)	Type strain
138131	C. lapagei 003, 818-75, CIP 104937
138143	C. lapagei 817-78, 007, CIP 105018
143716	C. lapagei CCUG 21137
143717	C. lapagei CCUG 21138
143718	C. lapagei CCUG 21139
143719	C. lapagei CCUG 21140

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
120558	negative	rod-shaped
125438	negative			99

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1782	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38418	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
120558	CIP Medium 3	Medium recipe at CIP
120558	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1782	positive	growth	30
38418	positive	growth	30
67770	positive	growth	37
120558	positive	growth	5-37
120558	negative	growth	41

Physiology and metabolism

Oxygen tolerance

120558

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.207

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	+	builds acid from	from API ID32E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
120558	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68374	18333 ChEBI	D-arabitol	+	builds acid from	from API ID32E
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	+	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
120558	17234 ChEBI	glucose	+	fermentation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
120558	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	+	assimilation	from API ID32E
120558	15792 ChEBI	malonate	+	assimilation
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
120558	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
120558	17632 ChEBI	nitrate	+	reduction
120558	16301 ChEBI	nitrite	-	reduction
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68371	0 ChEBI	Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68374	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
120558	132112 ChEBI	sodium thiosulfate	-	builds gas from
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
120558	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
120558	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
120558	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	-			from API 20E
120558	17234 ChEBI	glucose		-
68374	35581 ChEBI	indole			-	from API ID32E
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120558	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
120558	beta-galactosidase	-	3.2.1.23
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68374	beta-glucosidase	+	3.2.1.21	from API ID32E
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
120558	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120558	gelatinase	-
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68374	lipase	+		from API ID32E
68382	lipase (C 14)	-		from API zym
120558	lysine decarboxylase	-	4.1.1.18
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120558	ornithine decarboxylase	-	4.1.1.17
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
120558	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
120558	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
120558	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68374	urease	-	3.5.1.5	from API ID32E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
45681	+	+	-	-	+	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120558	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120558	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	+	+	-	-	-	+	+	+	+	+	+	+	+	+	-	+	-	-	-	-	-	-	+	-	+/-	-	+	-	+	-	-	+	+/-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
45681	-	+	-	-	-	-	-	+	+	+	+	+	-	-	-	+	-	+	+	+	-	-	+	-	-	+	-	-	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120558	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	+	-	+	-	+	+	+	+	+	-	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	+	-	-	+	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	+	+	-	+	-	-	-	-	-	-	+	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Throat

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
1782	human throat	Homo sapiens		Canada	CAN	North America
45681	Human throat	Homo sapiens	1976	Canada	CAN	North America
67770	Throat			Canada	CAN	North America
120558	Human, Throat	Homo sapiens		Canada	CAN	North America	1976

Taxonmaps

69479

Global distribution of 16S sequence LC036262 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	2
Soil Samples	0
Animal Samples	9
Plant Samples	0
Total Samples	11

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1782	2	Risk group (German classification) According to TRBA 466
120558	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	36672_A01 assembly for Cedecea lapagei NCTC11466	complete	GCA_900635955	158823.5	2836746200	158823	97.08

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Cedecea lapagei gene for 16S ribosomal RNA, partial sequence, strain: JCM 1684, clone: 1	LC036260	1464	158823
67770	Cedecea lapagei gene for 16S ribosomal RNA, partial sequence, strain: JCM 1684, clone: 2	LC036261	1462	158823
67770	Cedecea lapagei gene for 16S ribosomal RNA, partial sequence, strain: JCM 1684, clone: 3	LC036262	1462	158823
124043	Cedecea lapagei strain DSM 4587 16S ribosomal RNA gene, partial sequence.	KY797643	1197	158823
124043	Cedecea lapagei strain DSM 4587 16S ribosomal RNA gene, partial sequence.	MK696051	384	158823

GC content

@ref	GC-content (mol%)	Method
67770	47.2-49	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 36672_A01 assembly for Cedecea lapagei NCTC11466
BV-BRC: 158823.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	81.46	no
125439	gram_stain	BacteriaNetⓘ	negative	89.49	no
125439	motility	BacteriaNetⓘ	yes	59.85	no
125439	spore_formation	BacteriaNetⓘ	no	96.21	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cedecea lapagei NCTC11466
NCBI: GCA_900635955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	95.33	yes
125438	aerobic	aerobicⓘ	no	62.12	no
125438	spore-forming	spore-formingⓘ	no	89.65	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	78.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste.	Mathews SL, Epps MJ, Blackburn RK, Goshe MB, Grunden AM, Dunn RR.	R Soc Open Sci	10.1098/rsos.180748	2019
Pathogenicity	Silver nanoparticles produced from Cedecea sp. exhibit antibiofilm activity and remarkable stability.	Singh P, Pandit S, Jers C, Joshi AS, Garnaes J, Mijakovic I.	Sci Rep	10.1038/s41598-021-92006-4	2021
	Mesorhizobium sp. J8 can establish symbiosis with Glycyrrhiza uralensis, increasing glycyrrhizin production.	Kusaba I, Nakao T, Maita H, Sato S, Chijiiwa R, Yamada E, Arima S, Kojoma M, Ishimaru K, Akashi R, Suzuki A.	Plant Biotechnol (Tokyo)	10.5511/plantbiotechnology.20.1124a	2021
Genetics	Genomic Landscape Highlights Molecular Mechanisms Involved in Silicate Solubilization, Stress Tolerance, and Potential Growth-Promoting Activity of Bacterium Enterobacter sp. LR6.	Raturi G, Sharma Y, Mandlik R, Kumawat S, Rana N, Dhar H, Tripathi DK, Sonah H, Sharma TR, Deshmukh R.	Cells	10.3390/cells11223622	2022
	DNA probe specific for Legionella pneumophila.	Grimont PA, Grimont F, Desplaces N, Tchen P.	J Clin Microbiol	10.1128/jcm.21.3.431-437.1985	1985

References

#1782	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4587
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38418	; Curators of the CIP;
#45681	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12371
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120558	Collection of Institut Pasteur ; Curators of the CIP; CIP 80.35
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cedecea lapagei (CCUG 12371, NCTC 11466, LMG 7863)

Name and taxonomic classification

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