Buttiauxella agrestis (DSM 9389, S3/6-333)

Name: Buttiauxella agrestis (DSM 9389, S3/6-333)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4312

Type strain

Strain Designation S3/6-333

Culture col. no. DSM 9389 S3/6-333

NCBI tax ID(s) 82977

Special Collections DSMZ

History DSMZ <- H. E. Müller, Medizinaluntersuchungsamt Braunschweig; S3/6-333

Links

Buttiauxella agrestis S3/6-333 is a bacterium that was isolated from slug.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 43134

ATCC 51705,DSM 9389

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Buttiauxella

Species Buttiauxella agrestis

Full scientific name Buttiauxella agrestis Ferragut et al. 1982

BacDive ID	Other strains from **Buttiauxella agrestis** (6)	Type strain
4311	B. agrestis Gavini-F-44, F44, DSM 4586, ATCC 33320, CIP ... (type strain)
130885	B. agrestis S3/3-162, DSM 9388
143712	B. agrestis CCUG 21133, ATCC 33993
143713	B. agrestis CCUG 21134, ATCC 33995
143714	B. agrestis CCUG 21135
143715	B. agrestis CCUG 21136

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.694
125439	negative	95.157

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3467	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3467	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.989

Spore formation

@ref	Spore formation	Confidence
125439		98.414

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
3467	+	-	-	+	-	-	-	-	-	-	-	+	+	-	+	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3467	slug	Braunschweig	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3467	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1323427v1 assembly for Buttiauxella agrestis DSM 9389	complete	GCA_013234275	82977.7	8074814845	82977	99.07

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1323427v1 assembly for Buttiauxella agrestis DSM 9389
BV-BRC: 82977.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.99	no
125439	gram_stain	BacteriaNetⓘ	negative	95.16	no
125439	motility	BacteriaNetⓘ	yes	52.94	no
125439	spore_formation	BacteriaNetⓘ	no	98.41	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Buttiauxella agrestis DSM 9389
NCBI: GCA_013234275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.69	no
125438	anaerobic	anaerobicⓘ	no	96.51	no
125438	aerobic	aerobicⓘ	no	64.09	no
125438	spore-forming	spore-formingⓘ	no	86.75	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	78.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Comparative Analysis of Mesophilic YqfB-Type Amidohydrolases.	Statkeviciute R, Sadauskas M, Rainyte J, Kavaliauskaite K, Meskys R.	Biomolecules	10.3390/biom12101492	2022
Genetics	Complete Genome Sequence of Buttiauxella agrestis DSM 9389.	Nakamichi N, Moriuchi R, Dohra H, Futamata H, Tashiro Y	Microbiol Resour Announc	10.1128/MRA.00301-21	2021

References

#3467	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9389
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Buttiauxella agrestis (DSM 9389, S3/6-333)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013234275

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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