Strain identifier

BacDive ID: 4312

Type strain: No

Species: Buttiauxella agrestis

Strain Designation: S3/6-333

Strain history: <- H. E. Müller, Medizinaluntersuchungsamt Braunschweig; S3/6-333

NCBI tax ID(s): 82977 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 3467

BacDive-ID: 4312

DSM-Number: 9389

keywords: genome sequence, Bacteria, motile

description: Buttiauxella agrestis S3/6-333 is a motile bacterium that was isolated from slug.

NCBI tax id

  • NCBI tax id: 82977
  • Matching level: species

strain history

  • @ref: 3467
  • history: <- H. E. Müller, Medizinaluntersuchungsamt Braunschweig; S3/6-333

doi: 10.13145/bacdive4312.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Buttiauxella
  • species: Buttiauxella agrestis
  • full scientific name: Buttiauxella agrestis Ferragut et al. 1982

@ref: 3467

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Buttiauxella

species: Buttiauxella agrestis

full scientific name: Buttiauxella agrestis Ferragut et al. 1982 emend. Müller et al. 1996

strain designation: S3/6-333

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.694

Culture and growth conditions

culture medium

  • @ref: 3467
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 3467
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3467+--+-------++-++-+++-

Isolation, sampling and environmental information

isolation

  • @ref: 3467
  • sample type: slug
  • geographic location: Braunschweig
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

Safety information

risk assessment

  • @ref: 3467
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Buttiauxella agrestis DSM 9389GCA_013234275completencbi82977
66792Buttiauxella agrestis strain DSM 938982977.7completepatric82977

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.694no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.511no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no64.089no
69480spore-formingspore-formingAbility to form endo- or exosporesno86.75no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.5yes
69480flagellatedmotile2+Ability to perform flagellated movementyes78.893no

External links

@ref: 3467

culture collection no.: DSM 9389

straininfo link

  • @ref: 73804
  • straininfo: 43134

literature

  • topic: Genetics
  • Pubmed-ID: 33986092
  • title: Complete Genome Sequence of Buttiauxella agrestis DSM 9389.
  • authors: Nakamichi N, Moriuchi R, Dohra H, Futamata H, Tashiro Y
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/MRA.00301-21
  • year: 2021

Reference

@idauthorscataloguedoi/urltitle
3467Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9389)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9389
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
73804Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43134.1StrainInfo: A central database for resolving microbial strain identifiers