Name: Thioalkalivibrio halophilus HL17
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4295

Type strain:

Species: Thioalkalivibrio halophilus

Strain Designation: HL17

Culture col. no.: DSM 15791

Strain history: <- H. Banciu, Delft University of Technology, Department of Biotechnology, Delft, Netherlands; HL17 <- D. Y. Sorokin {2003}

NCBI tax ID(s): 252474 (species)

SI-ID 138040

DSM 15791

Special Collections

DSMZ

Section

Thioalkalivibrio halophilus HL17 is an anaerobe, motile bacterium that was isolated from hypersaline alkaline "Stamp lake".

motile
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Thioalkalivibrio*
	Species	**Thioalkalivibrio halophilus**
	Full Scientific Name (LPSN)	Thioalkalivibrio halophilus corrig. Banciu et al. 2005

Synonym

Thialkalivibrio halophilus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6107]

Culture medium

THIOALKALIVIBRIO HALOPHILUS MEDIUM (DSMZ Medium 1014)

[Ref.: #6107]

Culture medium growth

[Ref.: #6107]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6107]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6107]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6107]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.448
[Ref.: #69481]	Ability of spore formation	no Confidence in %95

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6107]	Sample type/isolated from	hypersaline alkaline "Stamp lake"
[Ref.: #6107]	Geographic location (country and/or sea, region)	South-West Siberia
[Ref.: #6107]	Country	Russia
[Ref.: #6107]	Country ISO 3 Code	RUS
[Ref.: #6107]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY346464 (>99% sequence identity) for Thioalkalivibrio halophilus subclade from Microbeatlas

Aquatic Samples	660
Soil Samples	128
Animal Samples	126
Plant Samples	47
Total Samples	961

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6107]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6107]	Thialkalivibrio halophilus 16S ribosomal RNA gene, partial sequence	AY346464	1323	GenBank ENA	252474 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thioalkalivibrio halophilus HL17	GCA_001995255	scaffold	GenBank ENA	252474 tax ID	*
[Ref.: #66792]	Thioalkalivibrio halophilus HL17	2834699438	draft	JGI IMG/M	252474 tax ID	*

[Ref.: #6107]

GC-content

65.1±0.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thioalkalivibrio halophilus HL17 NCBI: GCA_001995255.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	95	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thioalkalivibrio halophilus HL17 NCBI: GCA_001995255.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	52.901	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	51.812	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.448	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.72	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.706	no

Availability in culture collections External links

[Ref.: #6107]

Culture collection no.

DSM 15791

[Ref.: #73787]

SI-ID 138040

References

#6107

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15791

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73787

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138040.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thioalkalivibrio halophilus in external resources:
SILVA
BRENDA
PANGAEA
GBIF