Thioalkalivibrio thiocyanoxidans (DSM 13532, JCM 11368, ARh 2)

Name: Thioalkalivibrio thiocyanoxidans (DSM 13532, JCM 11368, ARh 2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4291

Status isotype of 4290

Type strain

Culture col. no. DSM 13532 JCM 11368 ARh 2 DSM 13542 JCM 11370 1 more

NCBI tax ID(s) 152475

Special Collections DSMZ JCM

History DSMZ <- D. Y. Sorokin; ARh 2 JCM <-- D. Y. Sorokin ARh 2 (grown with thiocyanate).

Links

Thioalkalivibrio thiocyanoxidans DSM 13532 is a bacterium that was isolated from soda lake.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 101025

DSM 13532,JCM 11368,ATCC BAA-720,JCM 11370,DSM 13541

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Ectothiorhodospiraceae

Genus Thioalkalivibrio

Species Thioalkalivibrio thiocyanoxidans

Full scientific name Thioalkalivibrio thiocyanoxidans corrig. Sorokin et al. 2002

Synonyms (1)

Thialkalivibrio thiocyanoxidans

BacDive ID	Other strains from **Thioalkalivibrio thiocyanoxidans** (1)	Type strain
4290	T. thiocyanoxidans DSM 13542, ARh 2, DSM 13532

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5080	ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)		Medium recipe at MediaDive	Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5080	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97.39
125438		93.399

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5080	soda lake	Kenya	KEN	Africa
67770	Soda lake	Kenya	KEN	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5080	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM38521v1 assembly for Thioalkalivibrio thiocyanoxidans ARh2	contig	GCA_000385215	1279019.3	2519899645	1279019	66.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5080	Thioalkalivibrio sp. ARh 2 16S ribosomal RNA gene, partial sequence	AF302081	1394		1279019
5080	Thioalkalivibrio thiocyanoxidans strain DSM 13532 type 16S ribosomal RNA gene, partial sequence	MN461569	1525		152475

GC content

@ref	GC-content (mol%)	Method
5080	66.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM38521v1 assembly for Thioalkalivibrio thiocyanoxidans ARh2
NCBI: GCA_000385215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	77.11	no
125439	gram_stain	BacteriaNetⓘ	negative	77.95	no
125439	motility	BacteriaNetⓘ	yes	53.54	no
125439	spore_formation	BacteriaNetⓘ	no	97.39	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thioalkalivibrio thiocyanoxidans ARh2 ARh2
NCBI: GCA_000385215.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	62.10	no
125438	aerobic	aerobicⓘ	yes	52.14	no
125438	spore-forming	spore-formingⓘ	no	93.40	no
125438	thermophilic	thermophileⓘ	no	94.78	yes
125438	flagellated	motile2+ⓘ	yes	70.86	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes.	Berben T, Overmars L, Sorokin DY, Muyzer G.	Front Microbiol	10.3389/fmicb.2017.00254	2017
Stress	Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway.	Ahn AC, Cavalca L, Colombo M, Schuurmans JM, Sorokin DY, Muyzer G	Front Microbiol	10.3389/fmicb.2019.01514	2019
	Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T) Using Transcriptomics.	Berben T, Balkema C, Sorokin DY, Muyzer G	mSystems	10.1128/mSystems.00102-17	2017
Genetics	Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T).	Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G	Stand Genomic Sci	10.1186/s40793-015-0078-x	2015
Phylogeny	Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes.	Sorokin DY, Tourova TP, Lysenko AM, Mityushina LL, Kuenen JG	Int J Syst Evol Microbiol	10.1099/00207713-52-2-657	2002

References

#5080	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13532
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thioalkalivibrio thiocyanoxidans (DSM 13532, JCM 11368, ARh 2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000385215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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