Name: Thioalkalivibrio thiocyanoxidans DSM 13532
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4291

Type strain:

Species: Thioalkalivibrio thiocyanoxidans

Variant: Isotype of BacDive ID 4290

Culture col. no.: DSM 13532, JCM 11368, ARh 2, DSM 13542, ATCC BAA-720, JCM 11370

Strain history: D. Y. Sorokin ARh 2 (grown with thiocyanate).

NCBI tax ID(s): 152475 (species)

SI-ID 101025

DSM 13532, JCM 11368, ATCC BAA-720, JCM 11370, DSM 13541

Special Collections

DSMZ
JCM

Other strains from Thioalkalivibrio thiocyanoxidans

Section

Thioalkalivibrio thiocyanoxidans DSM 13532 is a Gram-negative bacterium that was isolated from soda lake.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Thioalkalivibrio*
	Species	**Thioalkalivibrio thiocyanoxidans**
	Full Scientific Name (LPSN)	Thioalkalivibrio thiocyanoxidans corrig. Sorokin et al. 2002

Synonym

Thialkalivibrio thiocyanoxidans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5080]

Culture medium

ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)

[Ref.: #5080]

Culture medium growth

[Ref.: #5080]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5080]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5080]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.399

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5080]	Sample type/isolated from	soda lake
[Ref.: #5080]	Country	Kenya
[Ref.: #5080]	Country ISO 3 Code	KEN
[Ref.: #5080]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soda lake
[Ref.: #67770]	Country	Kenya
[Ref.: #67770]	Country ISO 3 Code	KEN
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5080]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5080]	Thioalkalivibrio thiocyanoxidans strain DSM 13532 type 16S ribosomal RNA gene, partial sequence	MN461569	1525	GenBank ENA	152475 tax ID
[Ref.: #5080]	Thioalkalivibrio sp. ARh 2 16S ribosomal RNA gene, partial sequence	AF302081	1394	GenBank ENA	1279019 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thioalkalivibrio thiocyanoxidans ARh2	GCA_000385215	contig	GenBank ENA	1279019 tax ID

[Ref.: #5080]

GC-content

66.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thioalkalivibrio thiocyanoxidans ARh2 ARh2 NCBI: GCA_000385215.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	62.095	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	52.141	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.399	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.779	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	70.86	no

Availability in culture collections External links

[Ref.: #5080]

Culture collection no.

DSM 13532, JCM 11368, ARh 2, DSM 13542, ATCC BAA-720, JCM 11370

[Ref.: #73784]

SI-ID 101025

Literature:

Topic	Title	Authors	Journal	DOI	Year
Stress	Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway.	Ahn AC, Cavalca L, Colombo M, Schuurmans JM, Sorokin DY, Muyzer G	Front Microbiol	10.3389/fmicb.2019.01514	2019	*
Genetics	Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T).	Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G	Stand Genomic Sci	10.1186/s40793-015-0078-x	2015	*
Phylogeny	Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes.	Sorokin DY, Tourova TP, Lysenko AM, Mityushina LL, Kuenen JG	Int J Syst Evol Microbiol	10.1099/00207713-52-2-657	2002	*
	Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T) Using Transcriptomics.	Berben T, Balkema C, Sorokin DY, Muyzer G	mSystems	10.1128/mSystems.00102-17	2017	*

References

#5080

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13532

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73784

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID101025.1 )

* These data were automatically processed and therefore are not curated

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Thioalkalivibrio thiocyanoxidans ARh2 ARh2

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