Name: Halorhodospira neutriphila DSM 15116
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4285

Type strain:

Species: Halorhodospira neutriphila

Culture col. no.: DSM 15116, SG 3301, JCM 17835

Strain history: A. Hirschler-Réa SG 3301.

NCBI tax ID(s): 168379 (species)

SI-ID 100679

DSM 15116, JCM 17835

Other strains from Halorhodospira neutriphila

H. neutriphila DSM 15115, SG 3304

Section

Halorhodospira neutriphila DSM 15116 is an anaerobe, mesophilic, motile bacterium that was isolated from microbial mat in marine saltern.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Halorhodospiraceae*
	Genus	*Halorhodospira*
	Species	**Halorhodospira neutriphila**
	Full Scientific Name (LPSN)	Halorhodospira neutriphila Hirschler-Réa et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %94.175

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5718]

Culture medium

HALORHODOSPIRA MEDIUM (DSMZ Medium 999)

[Ref.: #5718]

Culture medium growth

[Ref.: #5718]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5718]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5718]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #5718]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5718]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.717

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5718]	Sample type/isolated from	microbial mat in marine saltern
[Ref.: #5718]	Geographic location (country and/or sea, region)	Rhone Delta
[Ref.: #5718]	Country	France
[Ref.: #5718]	Country ISO 3 Code	FRA
[Ref.: #5718]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Microbial mat in marine saltern
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Microbial community	#Microbial mat
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ318525 (>99% sequence identity) for Halorhodospira neutriphila subclade from Microbeatlas

Aquatic Samples	87
Soil Samples	7
Animal Samples	13
Plant Samples	2
Total Samples	109

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5718]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halorhodospira neutriphila gene for 16S ribosomal RNA, partial sequence, strain: JCM 17835	AB643473	1507	ENA	168379 tax ID	*
[Ref.: #20218]	Halorhodospira neutrophila partial 16S rRNA gene, strain SG3301	AJ318525	1356	ENA	168379 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halorhodospira neutriphila DSM 15116	GCA_016584055	contig	GenBank	168379 tax ID	*
[Ref.: #66792]	Halorhodospira neutriphila strain DSM 15116	168379.4	wgs	PATRIC	168379 tax ID	*

[Ref.: #67770]

GC-content

74.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halorhodospira neutriphila strain DSM 15116 PATRIC: 168379.4
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorhodospira neutriphila strain DSM 15116 PATRIC: 168379.4
[Ref.: #69480]	motile	yes	92.044	no
[Ref.: #69480]	gram-positive	no	99.135	no
[Ref.: #69480]	anaerobic	yes	90.193	yes
[Ref.: #69480]	aerobic	no	95.353	yes
[Ref.: #69480]	halophile	yes	70.761	no
[Ref.: #69480]	spore-forming	no	92.624	no
[Ref.: #69480]	glucose-util	yes	54.212	no
[Ref.: #69480]	flagellated	yes	54.292	no
[Ref.: #69480]	thermophile	no	91.651	yes
[Ref.: #69480]	glucose-ferment	no	82.278	no

Availability in culture collections External links

[Ref.: #5718]

Culture collection no.

DSM 15116, SG 3301, JCM 17835

[Ref.: #73779]

SI-ID 100679

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of spirilloid purple phototrophic bacteria forming red layers in microbial mats of Mediterranean salterns: description of Halorhodospira neutriphila sp. nov. and emendation of the genus Halorhodospira.	Hirschler-Rea A, Matheron R, Riffaud C, Moune S, Eatock C, Herbert RA, Willison JC, Caumette P	Int J Syst Evol Microbiol	10.1099/ijs.0.02226-0	2003	*

References

#5718

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15116

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73779

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100679.1 )

* These data were automatically processed and therefore are not curated

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Halorhodospira neutriphila strain DSM 15116

Halorhodospira neutriphila strain DSM 15116

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