Name: Halorhodospira neutriphila DSM 15116
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4285

Type strain:

Species: Halorhodospira neutriphila

Culture col. no.: DSM 15116, SG 3301, JCM 17835

Strain history: A. Hirschler-Réa SG 3301.

NCBI tax ID(s): 168379 (species)

SI-ID 100679

DSM 15116, JCM 17835

Special Collections

DSMZ
JCM

Other strains from Halorhodospira neutriphila

Section

Halorhodospira neutriphila DSM 15116 is an anaerobe, Gram-negative bacterium that was isolated from microbial mat in marine saltern.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Halorhodospiraceae*
	Genus	*Halorhodospira*
	Species	**Halorhodospira neutriphila**
	Full Scientific Name (LPSN)	Halorhodospira neutriphila Hirschler-Réa et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.75

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5718]

Culture medium

HALORHODOSPIRA MEDIUM (DSMZ Medium 999)

[Ref.: #5718]

Culture medium growth

[Ref.: #5718]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5718]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5718]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5718]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.847
[Ref.: #69481]	Ability of spore formation	no Confidence in %94

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5718]	Sample type/isolated from	microbial mat in marine saltern
[Ref.: #5718]	Geographic location (country and/or sea, region)	Rhone Delta
[Ref.: #5718]	Country	France
[Ref.: #5718]	Country ISO 3 Code	FRA
[Ref.: #5718]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Microbial mat in marine saltern
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Microbial community	#Microbial mat
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ318525 (>99% sequence identity) for Halorhodospira neutriphila subclade from Microbeatlas

Aquatic Samples	87
Soil Samples	7
Animal Samples	13
Plant Samples	2
Total Samples	109

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5718]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halorhodospira neutriphila gene for 16S ribosomal RNA, partial sequence, strain: JCM 17835	AB643473	1507	GenBank ENA	168379 tax ID	*
[Ref.: #20218]	Halorhodospira neutrophila partial 16S rRNA gene, strain SG3301	AJ318525	1356	GenBank ENA	168379 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halorhodospira neutriphila DSM 15116	GCA_016584055	contig	GenBank ENA	168379 tax ID	*
[Ref.: #66792]	Halorhodospira neutriphila strain DSM 15116	168379.4	wgs	PATRIC	168379 tax ID	*

[Ref.: #67770]

GC-content

74.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halorhodospira neutriphila strain DSM 15116 PATRIC: 168379.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	94	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorhodospira neutriphila strain DSM 15116 PATRIC: 168379.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.75	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	52.182	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.847	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	68.382	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	86.263	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.998	no

Availability in culture collections External links

[Ref.: #5718]

Culture collection no.

DSM 15116, SG 3301, JCM 17835

[Ref.: #73779]

SI-ID 100679

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of spirilloid purple phototrophic bacteria forming red layers in microbial mats of Mediterranean salterns: description of Halorhodospira neutriphila sp. nov. and emendation of the genus Halorhodospira.	Hirschler-Rea A, Matheron R, Riffaud C, Moune S, Eatock C, Herbert RA, Willison JC, Caumette P	Int J Syst Evol Microbiol	10.1099/ijs.0.02226-0	2003	*

References

#5718

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15116

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73779

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100679.1 )

* These data were automatically processed and therefore are not curated

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Halorhodospira neutriphila strain DSM 15116

Halorhodospira neutriphila strain DSM 15116

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