Halorhodospira neutriphila (DSM 15116, SG 3301, JCM 17835)

Name: Halorhodospira neutriphila (DSM 15116, SG 3301, JCM 17835)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4285

Type strain

Culture col. no. DSM 15116 SG 3301 JCM 17835

NCBI tax ID(s) 168379

Special Collections DSMZ JCM

History DSMZ <- P. Caumette; SG3301 <- R. Matheron JCM <-- A. Hirschler-Réa SG 3301.

Links

Halorhodospira neutriphila DSM 15116 is an anaerobe bacterium that was isolated from microbial mat in marine saltern.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100679

DSM 15116,JCM 17835

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Halorhodospiraceae

Genus Halorhodospira

Species Halorhodospira neutriphila

Full scientific name Halorhodospira neutriphila Hirschler-Réa et al. 2003

BacDive ID	Other strains from **Halorhodospira neutriphila** (1)	Type strain
4284	H. neutriphila DSM 15115, SG 3304

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.75

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5718	HALORHODOSPIRA MEDIUM (DSMZ Medium 999)		Medium recipe at MediaDive	Name: HALORHODOSPIRA MEDIUM (DSMZ Medium 999) Composition: NaCl 100.0 g/l NaHCO3 2.0 g/l MgCl2 x 6 H2O 2.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l Na2S x 9 H2O 0.75 g/l NH4Cl 0.5 g/l CaCl2 x 2 H2O 0.05 g/l FeSO4 x 7 H2O 0.0011 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l Pyridoxamine 5e-05 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Vitamine B12 2e-05 g/l Nicotinate 2e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l p-Aminobenzoate 1e-05 g/l Thiamine 1e-05 g/l Pantothenate 5e-06 g/l Biotine 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
5718	CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421)		Medium recipe at MediaDive	Name: CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421) Composition: NaCl 100.0 g/l MgCl2 x 6 H2O 3.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Na acetate 0.5 g/l Sodium Thiosulfate 0.5 g/l Ammonium chloride 0.349999 g/l KH2PO4 0.349999 g/l KCl 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Dextrose 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Ammonium acetate 0.25 g/l Yeast extract 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l H2O Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5718	positive	growth	30
5718	positive	growth	28
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

5718

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.847
125439		99.647

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Microbial community	#Microbial mat
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5718	microbial mat in marine saltern	Rhone Delta	France	FRA	Europe
67770	Microbial mat in marine saltern

Taxonmaps

69479

Global distribution of 16S sequence AJ318525 (>99% sequence identity) for Halorhodospira neutriphila subclade from Microbeatlas

Aquatic Samples	87
Soil Samples	7
Animal Samples	13
Plant Samples	2
Total Samples	109

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5718	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1658405v1 assembly for Halorhodospira neutriphila DSM 15116	contig	GCA_016584055	168379.4	2994947087	168379	14.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Halorhodospira neutriphila gene for 16S ribosomal RNA, partial sequence, strain: JCM 17835	AB643473	1507		168379
20218	Halorhodospira neutrophila partial 16S rRNA gene, strain SG3301	AJ318525	1356		168379

GC content

@ref	GC-content (mol%)	Method
67770	74.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1658405v1 assembly for Halorhodospira neutriphila DSM 15116
NCBI: GCA_016584055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.78	no
125439	gram_stain	BacteriaNetⓘ	negative	80.33	no
125439	motility	BacteriaNetⓘ	yes	71.78	no
125439	spore_formation	BacteriaNetⓘ	no	99.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halorhodospira neutriphila strain DSM 15116
PATRIC: 168379.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.75	no
125438	anaerobic	anaerobicⓘ	yes	52.18	no
125438	spore-forming	spore-formingⓘ	no	90.85	no
125438	aerobic	aerobicⓘ	no	68.38	yes
125438	thermophilic	thermophileⓘ	no	86.26	no
125438	flagellated	motile2+ⓘ	yes	74.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses.	Imhoff JF, Rahn T, Kunzel S, Keller A, Neulinger SC.	Microorganisms	10.3390/microorganisms9010046	2020
Phylogeny	Genomic Comparison, Phylogeny and Taxonomic Reevaluation of the Ectothiorhodospiraceae and Description of Halorhodospiraceae fam. nov. and Halochlorospira gen. nov.	Imhoff JF, Kyndt JA, Meyer TE.	Microorganisms	10.3390/microorganisms10020295	2022
Enzymology	Prokaryotic diversity in Aran-Bidgol salt lake, the largest hypersaline playa in Iran.	Makhdoumi-Kakhki A, Amoozegar MA, Kazemi B, Pasic L, Ventosa A.	Microbes Environ	10.1264/jsme2.me11267	2012
Phylogeny	Isolation and characterization of spirilloid purple phototrophic bacteria forming red layers in microbial mats of Mediterranean salterns: description of Halorhodospira neutriphila sp. nov. and emendation of the genus Halorhodospira.	Hirschler-Rea A, Matheron R, Riffaud C, Moune S, Eatock C, Herbert RA, Willison JC, Caumette P	Int J Syst Evol Microbiol	10.1099/ijs.0.02226-0	2003

References

#5718	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15116
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halorhodospira neutriphila (DSM 15116, SG 3301, JCM 17835)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016584055

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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