Name: Dietzia lutea DSM 45074
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4264

Type strain:

Species: Dietzia lutea

Culture col. no.: DSM 45074, CCTCC AA 207008, KCTC 19232, YIM 80766, JCM 19954

Strain history: <- SK Tang, Yunnan Inst. Microbiol., China

NCBI tax ID(s): 546160 (species)

SI-ID 407891

DSM 45074

Section

Dietzia lutea DSM 45074 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from desert soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Dietziaceae*
	Genus	*Dietzia*
	Species	**Dietzia lutea**
	Full Scientific Name (LPSN)	Dietzia lutea Li et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.69

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12317]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12317]

Culture medium growth

[Ref.: #12317]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12317]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12317]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #12317]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.966

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12317]	Sample type/isolated from	desert soil
[Ref.: #12317]	Country	Egypt
[Ref.: #12317]	Country ISO 3 Code	EGY
[Ref.: #12317]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil from the eastern desert of Egypt

[Ref.: #67771]	Sample type/isolated from	From alkaline desert soil
[Ref.: #67771]	Country	Egypt
[Ref.: #67771]	Country ISO 3 Code	EGY
[Ref.: #67771]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12317]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12317]	Dietzia lutea strain YIM 80766 16S ribosomal RNA gene, partial sequence	EU821598	1396	ENA	546160 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dietzia lutea YIM 80766	GCA_003096075	complete	GenBank	546160 tax ID	*
[Ref.: #66792]	Dietzia lutea YIM 80766	GCA_009806405	scaffold	GenBank	546160 tax ID	*
[Ref.: #66792]	Dietzia lutea strain YIM 80766	546160.4	wgs	PATRIC	546160 tax ID	*
[Ref.: #66792]	Dietzia lutea strain YIM 80766	546160.3	complete	PATRIC	546160 tax ID	*
[Ref.: #66792]	Dietzia lutea YIM 80766	2841082593	complete	JGI IMG/M	546160 tax ID	*

[Ref.: #12317]

GC-content

70.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dietzia lutea YIM 80766 NCBI: GCA_003096075.1
[Ref.: #69481]	spore-forming	yes	51	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dietzia lutea YIM 80766 NCBI: GCA_003096075.1
[Ref.: #69480]	flagellated	no	98.736	no
[Ref.: #69480]	gram-positive	yes	89.962	yes
[Ref.: #69480]	anaerobic	no	98.908	no
[Ref.: #69480]	halophile	no	55.59	no
[Ref.: #69480]	spore-forming	no	87.63	no
[Ref.: #69480]	glucose-util	yes	87.268	no
[Ref.: #69480]	aerobic	yes	90.922	no
[Ref.: #69480]	thermophile	no	98.462	no
[Ref.: #69480]	motile	no	94.442	no
[Ref.: #69480]	glucose-ferment	no	89.194	no

Availability in culture collections External links

[Ref.: #12317]

Culture collection no.

DSM 45074, CCTCC AA 207008, KCTC 19232, YIM 80766, JCM 19954

[Ref.: #73759]

SI-ID 407891

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt.	Li J, Chen C, Zhao GZ, Klenk HP, Pukall R, Zhang YQ, Tang SK, Li WJ	Syst Appl Microbiol	10.1016/j.syapm.2008.11.007	2009	*

References

#12317

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45074

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73759

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407891.1 )

* These data were automatically processed and therefore are not curated

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Dietzia lutea YIM 80766

Dietzia lutea YIM 80766

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