Strain identifier
BacDive ID: 4264
Type strain:
Species: Dietzia lutea
Strain history: <- SK Tang, Yunnan Inst. Microbiol., China
NCBI tax ID(s): 546160 (species)
General
@ref: 12317
BacDive-ID: 4264
DSM-Number: 45074
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Dietzia lutea DSM 45074 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from desert soil.
NCBI tax id
- NCBI tax id: 546160
- Matching level: species
strain history
@ref | history |
---|---|
12317 | <- YIM <- C. Chen |
67770 | KCTC 19232 <-- YIM 80766 <-- C. Chen. |
67771 | <- SK Tang, Yunnan Inst. Microbiol., China |
doi: 10.13145/bacdive4264.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Dietziaceae
- genus: Dietzia
- species: Dietzia lutea
- full scientific name: Dietzia lutea Li et al. 2011
@ref: 12317
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dietziaceae
genus: Dietzia
species: Dietzia lutea
full scientific name: Dietzia lutea Li et al. 2011
type strain: yes
Morphology
cell morphology
@ref | gram stain | motility | confidence |
---|---|---|---|
67771 | positive | ||
69480 | no | 94.69 | |
69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 12317
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
12317 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.966
observation
- @ref: 67770
- observation: quinones: MK-8(H2)
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
12317 | desert soil | Egypt | EGY | Africa |
67770 | Soil from the eastern desert of Egypt | |||
67771 | From alkaline desert soil | Egypt | EGY | Africa |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Desert |
#Environmental | #Terrestrial | #Soil |
#Condition | #Xerophilic |
Safety information
risk assessment
- @ref: 12317
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 12317
- description: Dietzia lutea strain YIM 80766 16S ribosomal RNA gene, partial sequence
- accession: EU821598
- length: 1396
- database: ena
- NCBI tax ID: 546160
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Dietzia lutea YIM 80766 | GCA_003096075 | complete | ncbi | 546160 |
66792 | Dietzia lutea YIM 80766 | GCA_009806405 | scaffold | ncbi | 546160 |
66792 | Dietzia lutea strain YIM 80766 | 546160.4 | wgs | patric | 546160 |
66792 | Dietzia lutea strain YIM 80766 | 546160.3 | complete | patric | 546160 |
66792 | Dietzia lutea YIM 80766 | 2841082593 | complete | img | 546160 |
GC content
- @ref: 12317
- GC-content: 70.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 51 | no |
flagellated | no | 98.736 | no |
gram-positive | yes | 89.962 | yes |
anaerobic | no | 98.908 | no |
halophile | no | 55.59 | no |
spore-forming | no | 87.63 | no |
glucose-util | yes | 87.268 | no |
aerobic | yes | 90.922 | no |
thermophile | no | 98.462 | no |
motile | no | 94.442 | no |
glucose-ferment | no | 89.194 | no |
External links
@ref: 12317
culture collection no.: DSM 45074, CCTCC AA 207008, KCTC 19232, YIM 80766, JCM 19954
straininfo link
- @ref: 73759
- straininfo: 407891
literature
- topic: Phylogeny
- Pubmed-ID: 19157741
- title: Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt.
- authors: Li J, Chen C, Zhao GZ, Klenk HP, Pukall R, Zhang YQ, Tang SK, Li WJ
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2008.11.007
- year: 2009
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/genetics, *Desert Climate, Egypt, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
12317 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45074) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45074 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
73759 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407891.1 | StrainInfo: A central database for resolving microbial strain identifiers |