Name: Dietzia psychralcaliphila ILA-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4254

Type strain:

Species: Dietzia psychralcaliphila

Strain Designation: ILA-1

Culture col. no.: DSM 44820, CCUG 47128, CCUG 47263, CIP 107427, IAM 14896, NCIMB 13777, JCM 10987, BCRC 16329, CCUG 49427, DSM 44782, NBRC 103065

Strain history: I. Yumoto ILA-1.

NCBI tax ID(s): 139021 (species)

Other strains from Dietzia psychralcaliphila

D. psychralcaliphila CCUG 54858

Section

Dietzia psychralcaliphila ILA-1 is a mesophilic bacterium that was isolated from water .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Dietziaceae*
	Genus	*Dietzia*
	Species	**Dietzia psychralcaliphila**
	Full Scientific Name (LPSN)	Dietzia psychralcaliphila Yumoto et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.523

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12116]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12116]

Culture medium growth

[Ref.: #12116]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12116]

Culture medium composition

expand / minimize

[Ref.: #38205]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38205]

Culture medium growth

[Ref.: #38205]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12116]	growth	28 °C
[Ref.: #38205]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12116]	Temperature range	mesophilic
[Ref.: #38205]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.991

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65622]

Fatty acid	Percentage	ECL
C18:1 ω9c	21.7	17.769
C16:0	20.2	16
Unidentified	12.6	18.794
C17:0	7.5	17
C19:0	5.8	19
C18:2 ω6,9c/C18:0 ANTE	5.1	17.724
C16:1 ω7c/C15:0 ISO 2OH	5	15.85
C16:1 ω7c	4.8	15.819
TBSA 10Me18:0	4.7	18.392
C17:1 ω8c	4.5	16.792
C18:0	4.2	18
C15:0	1.1	15
C14:0	1	14
Unidentified	0.8	19.798
C16:0 anteiso	0.7	15.717
C16:1 ω9c	0.5	15.774

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12116]	Sample type/isolated from	water (6°C, pH7)

[Ref.: #67770]	Sample type/isolated from	Water (6C, pH 7) from a drain pool of a fish-egg-processing plant
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB159036 (>99% sequence identity) for Dietzia from Microbeatlas

Aquatic Samples	1379
Soil Samples	321
Animal Samples	3158
Plant Samples	158
Total Samples	5016

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12116]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12116]	Dietzia psychroalcalophilus gene for 16S rRNA, partial sequence	AB049630	1483	ENA	139021 tax ID
[Ref.: #67770]	Dietzia psychralcaliphila gene for 16S rRNA, partial sequence	AB159036	1439	ENA	139021 tax ID
[Ref.: #20218]	Dietzia psychralcaliphila strain DSM 44820 16S ribosomal RNA gene, partial sequence	FJ468331	1439	ENA	139021 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dietzia psychralcaliphila DSM 44820	GCA_003046525	contig	GenBank	139021 tax ID
[Ref.: #67770]	Dietzia psychralcaliphila strain ILA-1 chromosome, complete genome	CP015453		ENA	139021 tax ID
[Ref.: #66792]	Dietzia psychralcaliphila ILA-1	GCA_009806395	scaffold	GenBank	139021 tax ID	*
[Ref.: #66792]	Dietzia psychralcaliphila strain DSM 44820	139021.3	wgs	PATRIC	139021 tax ID	*
[Ref.: #66792]	Dietzia psychralcaliphila strain ILA-1	139021.4	complete	PATRIC	139021 tax ID	*
[Ref.: #66792]	Dietzia psychralcaliphila DSM 44820	2737471650	draft	JGI IMG/M	139021 tax ID	*

[Ref.: #12116]	GC-content	69.6 mol%
[Ref.: #67770]	GC-content	69.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dietzia psychralcaliphila ILA-1 NCBI: GCA_003096095.1
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	no	99.991	yes
[Ref.: #69480]	anaerobic	no	99.392	no
[Ref.: #69480]	thermophile	no	99.748	yes
[Ref.: #69480]	motile	no	93.523	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dietzia psychralcaliphila ILA-1 NCBI: GCA_003096095.1
[Ref.: #69481]	spore-forming	yes	51	no

Availability in culture collections External links

[Ref.: #12116]

Culture collection no.

DSM 44820, CCUG 47128, CCUG 47263, CIP 107427, IAM 14896, NCIMB 13777, JCM 10987, BCRC 16329, CCUG 49427, DSM 44782, NBRC 103065

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons.	Yumoto I, Nakamura A, Iwata H, Kojima K, Kusumoto K, Nodasaka Y, Matsuyama H	Int J Syst Evol Microbiol	10.1099/00207713-52-1-85	2002	*

References

#12116

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44820

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38205 ; Curators of the CIP;
#65622 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47128

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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