Name: Desulfurococcus mucosus O7/1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4198

Type strain:

Species: Desulfurococcus mucosus

Strain Designation: O7/1

Culture col. no.: DSM 2162, ATCC 35584, JCM 9187

Strain history: DSM 2162 <-- W. Zillig O7/1.

NCBI tax ID(s): 765177 (strain), 2275 (species)

SI-ID 92975

ATCC 35584, DSM 2162, JCM 9187, KCTC 2486

Other strains from Desulfurococcus mucosus

D. mucosus Hvv 3/9, DSM 2161, ATCC 35582, ...

Section

Desulfurococcus mucosus O7/1 is an anaerobe, spore-forming, hyperthermophilic archaeon that was isolated from hot solfataric spring.

coccus-shaped
spore-forming
anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Desulfurococcales*
	Family	*Desulfurococcaceae*
	Genus	*Desulfurococcus*
	Species	**Desulfurococcus mucosus**
	Full Scientific Name (LPSN)	Desulfurococcus mucosus Zillig and Stetter 1983

Synonym

Desulfurococcus mobilis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.92

[Ref.: #23224]	Cell shape	coccus-shaped

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #987]

Culture medium

SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a)

[Ref.: #987]

Culture medium growth

[Ref.: #987]

Culture medium link

Medium recipe at MediaDive

[Ref.: #987]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #987]	growth	85 °C
[Ref.: #23224]	optimum	85 °C
[Ref.: #67770]	growth	85 °C

[Ref.: #987]	Temperature range	hyperthermophilic
[Ref.: #23224]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

	pH	Kind of pH		pH
[Ref.: #23224]			optimum	5.5-6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #987]	Oxygen tolerance	anaerobe
[Ref.: #23224]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.998

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.958

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #987]	Sample type/isolated from	hot solfataric spring
[Ref.: #987]	Geographic location (country and/or sea, region)	Öskjuvatu, Askja
[Ref.: #987]	Country	Iceland
[Ref.: #987]	Country ISO 3 Code	ISL
[Ref.: #987]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Acidic hot spring in Askja
[Ref.: #67770]	Country	Iceland
[Ref.: #67770]	Country ISO 3 Code	ISL
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Sulfuric	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_102882 (>99% sequence identity) for Desulfurococcus mucosus subclade from Microbeatlas

Aquatic Samples	16
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	20

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #987]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfurococcus mucosus DSM 2162 16S ribosomal RNA, complete sequence	NR_102882	1496	GenBank	765177 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfurococcus mucosus DSM 2162	GCA_000186365	complete	GenBank	765177 tax ID	*
[Ref.: #66792]	Desulfurococcus mucosus 07/1, DSM 2162	649633040	complete	JGI IMG/M	765177 tax ID	*
[Ref.: #66792]	Desulfurococcus mucosus DSM 2162	765177.25	complete	PATRIC	765177 tax ID	*

[Ref.: #23224]	GC-content	53.0 mol%
[Ref.: #987]	GC-content	52.4 mol%
[Ref.: #67770]	GC-content	52.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	51.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfurococcus mucosus DSM 2162 DSM 2162 NCBI: GCA_000186365.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfurococcus mucosus DSM 2162 DSM 2162 NCBI: GCA_000186365.1
[Ref.: #69480]	motile	no	60.143	no
[Ref.: #69480]	flagellated	no	91.767	no
[Ref.: #69480]	gram-positive	no	95.676	no
[Ref.: #69480]	anaerobic	yes	99.251	yes
[Ref.: #69480]	aerobic	no	96.813	yes
[Ref.: #69480]	halophile	no	82.529	no
[Ref.: #69480]	spore-forming	no	97.681	no
[Ref.: #69480]	glucose-util	yes	78.807	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	no	53.403	no

Availability in culture collections External links

[Ref.: #987]

Culture collection no.

DSM 2162, ATCC 35584, JCM 9187

[Ref.: #73698]

SI-ID 92975

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Cloning, overexpression, and structural characterization of a novel archaeal thermostable neopullulanase from Desulfurococcus mucosus DSM 2162.	Jafari F, Kiani-Ghaleh F, Eftekhari S, Razzaghshoar Razlighi M, Nazari N, Hajirajabi M, Masoomi Sarvestani F, Sharafieh G	Prep Biochem Biotechnol	10.1080/10826068.2022.2033996	2022	*

References

#987	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2162

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23224

Anna A. Perevalova, Ilya V. Kublanov, Salima Kh. Bidzhieva, Biswarup Mukhopadhyay, Elizaveta A. Bonch-Osmolovskaya, Alexander V. Lebedinsky: Reclassification of Desulfurococcus mobilis as a synonym of Desulfurococcus mucosus, Desulfurococcus fermentans and Desulfurococcus kamchatkensis as synonyms of Desulfurococcus amylolyticus, and emendation of the D. mucosus and D. amylolyticus species descriptions. IJSEM 66: 514 - 517 2016 ( DOI 10.1099/ijsem.0.000747 , PubMed 26596623 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73698

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92975.1 )

* These data were automatically processed and therefore are not curated

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Desulfurococcus mucosus DSM 2162 DSM 2162

Desulfurococcus mucosus DSM 2162 DSM 2162

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