Name: Desulfurococcus mucosus Hvv 3/9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4197

Type strain:

Species: Desulfurococcus mucosus

Strain Designation: Hvv 3/9

Culture col. no.: DSM 2161, ATCC 35582, JCM 9186

Strain history: DSM 2161 <-- W. Zillig Hvv 3/9.

NCBI tax ID(s): 675631 (strain), 2275 (species)

SI-ID 93022

ATCC 35582, DSM 2161, JCM 9186

Other strains from Desulfurococcus mucosus

D. mucosus O7/1, DSM 2162, ATCC 35584, JCM ... (type strain)

Section

Desulfurococcus mucosus Hvv 3/9 is an anaerobe, spore-forming, hyperthermophilic archaeon that was isolated from acidic water from solfataric field.

Gram-negative
spore-forming
anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Desulfurococcales*
	Family	*Desulfurococcaceae*
	Genus	*Desulfurococcus*
	Species	**Desulfurococcus mucosus**
	Full Scientific Name (LPSN)	Desulfurococcus mucosus Zillig and Stetter 1983

Synonym

Desulfurococcus mobilis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.959

Information on culture and growth conditions Culture and growth conditions

[Ref.: #986]

Culture medium

SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a)

[Ref.: #986]

Culture medium growth

[Ref.: #986]

Culture medium link

Medium recipe at MediaDive

[Ref.: #986]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #986]			growth	85 °C
[Ref.: #67770]			growth	85 °C

[Ref.: #986]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

Information on physiology and metabolism Physiology and metabolism

[Ref.: #986]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.683

[Ref.: #69481]	Ability of spore formation	yes Confidence in %95
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.97

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #986]	Sample type/isolated from	acidic water from solfataric field
[Ref.: #986]	Geographic location (country and/or sea, region)	Hveravellir
[Ref.: #986]	Country	Iceland
[Ref.: #986]	Country ISO 3 Code	ISL
[Ref.: #986]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Acidic hot spring in Hveravellir
[Ref.: #67770]	Country	Iceland
[Ref.: #67770]	Country ISO 3 Code	ISL
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Acidic	-
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M36474 (>99% sequence identity) for Desulfurococcus mucosus subclade from Microbeatlas

Aquatic Samples	16
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	20

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #986]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #986]	D.mobilis ribosomal 16S RNA gene	M36474	1650	ENA	2275 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfurococcus mucosus DSM 2161	GCA_001006085	scaffold	GenBank	675631 tax ID
[Ref.: #66792]	Desulfurococcus mobilis DSM 2161	2513237118	draft	JGI IMG/M	675631 tax ID	*
[Ref.: #66792]	Desulfurococcus mobilis DSM 2161	675631.5	wgs	PATRIC	675631 tax ID	*

[Ref.: #67770]

GC-content

50.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfurococcus mucosus DSM 2161 DSM 2161 NCBI: GCA_001006085.1
[Ref.: #69481]	spore-forming	yes	95	no

Availability in culture collections External links

[Ref.: #986]

Culture collection no.

DSM 2161, ATCC 35582, JCM 9186

[Ref.: #73697]

SI-ID 93022

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.	Susanti D, Johnson EF, Lapidus A, Han J, Reddy TB, Pilay M, Ivanova NN, Markowitz VM, Woyke T, Kyrpides NC, Mukhopadhyay B	Stand Genomic Sci	10.1186/s40793-015-0128-4	2016	*

References

#986	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2161

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93022.1 )

* These data were automatically processed and therefore are not curated

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Desulfurococcus mucosus DSM 2161 DSM 2161

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