Name: Hippea alviniae EP5-r
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4188

Type strain:

Species: Hippea alviniae

Strain Designation: EP5-r

Culture col. no.: DSM 24586, OCM 986

Strain history: <- A.-L. Reysenbach, Portland State Univ., USA; EP5-r <- Y. Liu {2007}

NCBI tax ID(s): 1279027 (species)

SI-ID 405575

DSM 24586

Special Collections

Section

Hippea alviniae EP5-r is an anaerobe, Gram-negative, ovoid-shaped bacterium that was isolated from hydrothermal vent deposit, 2520 m depth.

Gram-negative
ovoid-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfurellales*
	Family	*Desulfurellaceae*
	Genus	*Hippea*
	Species	**Hippea alviniae**
	Full Scientific Name (LPSN)	Hippea alviniae Flores et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30302]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.427

[Ref.: #30302]	Cell length	1.1 µm

[Ref.: #30302]	Cell width	0.45 µm

[Ref.: #30302]	Cell shape	ovoid-shaped

[Ref.: #30302]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17701]

Culture medium

HIPPEA JASONIAE MEDIUM (DSMZ Medium 1360)

[Ref.: #17701]

Culture medium growth

[Ref.: #17701]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17701]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17701]	growth	65 °C
[Ref.: #30302]	growth	45-75 °C
[Ref.: #30302]	optimum	60 °C

	pH	Kind of pH		pH
[Ref.: #30302]			optimum	4.75
[Ref.: #30302]			growth	3.5-5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17701]	Oxygen tolerance	anaerobe
[Ref.: #30302]	Oxygen tolerance	anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.389

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30302]		NaCl		growth	1-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30302]	acetate ChEBI	+	carbon source
[Ref.: #30302]	propionate ChEBI	+	carbon source
[Ref.: #30302]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17701]	Sample type/isolated from	hydrothermal vent deposit, 2520 m depth
[Ref.: #17701]	Geographic location (country and/or sea, region)	East Pacific Rise, 'A' vent
[Ref.: #17701]	Country	International waters
[Ref.: #17701]	Geographic location	9.7750°/-104.2800°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17701]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30302]	Hippea sp. LR3-DR partial 16S rRNA gene, strain LR3-DR	FR754508	1482	GenBank ENA	944332 tax ID
[Ref.: #17701]	Hippea alviniae EP5-r partial 16S rRNA gene	FR754500	1509	GenBank ENA	944480 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hippea alviniae EP5-r	GCA_000420385	contig	GenBank ENA	944480 tax ID	*
[Ref.: #66792]	Hippea alviniae EP5-r	944480.3	wgs	PATRIC	944480 tax ID	*
[Ref.: #66792]	Hippea alviniae EP5-r, DSM 24586	2523231012	draft	JGI IMG/M	944480 tax ID	*

[Ref.: #17701]	GC-content	37.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30302]	GC-content	37.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hippea alviniae EP5-r PATRIC: 944480.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.427	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.322	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	87.735	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.389	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	73.615	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	62.274	no

Availability in culture collections External links

[Ref.: #17701]

Culture collection no.

DSM 24586, OCM 986

[Ref.: #73688]

SI-ID 405575

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic members of the class Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits.	Flores GE, Hunter RC, Liu Y, Mets A, Schouten S, Reysenbach AL	Int J Syst Evol Microbiol	10.1099/ijs.0.033001-0	2011	*

References

#17701

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24586

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30302

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26643 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73688

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405575.1 )

#26643

IJSEM 1252 2012 ( DOI 10.1099/ijs.0.033001-0 , PubMed 21764980 )

* These data were automatically processed and therefore are not curated

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