Name: Paucidesulfovibrio capillatus DSM 14982
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4145

Type strain:

Species: Paucidesulfovibrio capillatus

Culture col. no.: DSM 14982, CIP 107483, MET met2, MET 2

Strain history: CIP <- 2002, E. Miranda, IRD, Marseille, France: strain met2

NCBI tax ID(s): 218206 (species)

SI-ID 97649

CIP 107483, DSM 14982

Section

Paucidesulfovibrio capillatus DSM 14982 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from oil-water mixture taken from production well heads .

Gram-negative
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Paucidesulfovibrio*
	Species	**Paucidesulfovibrio capillatus**
	Full Scientific Name (LPSN)	Paucidesulfovibrio capillatus (Miranda-Tello et al. 2013) Waite et al. 2020

Synonym

Desulfovibrio capillatus

Information on morphological and physiological properties Morphology

[Ref.: #117147]	Gram stain	negative

[Ref.: #117147]	Cell shape	rod-shaped

[Ref.: #117147]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5652]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #5652]

Culture medium growth

[Ref.: #5652]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5652]

Culture medium composition

expand / minimize

[Ref.: #37896]

Culture medium

MEDIUM 457 - for Desulfovibrio sp.

[Ref.: #37896]

Culture medium growth

[Ref.: #37896]

Culture medium composition

expand / minimize

[Ref.: #117147]

Culture medium

CIP Medium 457

[Ref.: #117147]

Culture medium growth

[Ref.: #117147]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #5652]			growth	40 °C
[Ref.: #37896]			growth	37 °C

[Ref.: #5652]	Temperature range	thermophilic
[Ref.: #37896]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5652]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5652]	Sample type/isolated from	oil-water mixture taken from production well heads (SAM-III)
[Ref.: #5652]	Geographic location (country and/or sea, region)	Gulf of Mexico, Tabasco
[Ref.: #5652]	Country	Mexico
[Ref.: #5652]	Country ISO 3 Code	MEX
[Ref.: #5652]	Continent	North America

[Ref.: #117147]	Sample type/isolated from	Environment, Oil well
[Ref.: #117147]	Geographic location (country and/or sea, region)	Gulf of Mexico
[Ref.: #117147]	Country	Mexico
[Ref.: #117147]	Country ISO 3 Code	MEX
[Ref.: #117147]	Continent	North America
[Ref.: #117147]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY176773 (>99% sequence identity) for Desulfovibrio capillatus from Microbeatlas

Aquatic Samples	95
Soil Samples	2
Animal Samples	4
Plant Samples
Total Samples	101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5652]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117147]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5652]	Desulfovibrio capillatus strain Met 2 16S ribosomal RNA gene, partial sequence	AY176773	1501	ENA	218206 tax ID

[Ref.: #5652]

GC-content

58.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5652]

Culture collection no.

DSM 14982, CIP 107483, MET met2, MET 2

[Ref.: #73647]

SI-ID 97649

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio capillatus sp. nov., a novel sulfate-reducing bacterium isolated from an oil field separator located in the Gulf of Mexico.	Miranda-Tello E, Fardeau ML, Fernandez L, Ramirez F, Cayol JL, Thomas P, Garcia JL, Ollivier B	Anaerobe	10.1016/S1075-9964(03)00064-7	2003	*

References

#5652

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14982

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37896 ; Curators of the CIP;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73647

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97649.1 )

#117147 Collection of Institut Pasteur ; Curators of the CIP; CIP 107483
* These data were automatically processed and therefore are not curated

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