Name: Desulfovibrio intestinalis KMS2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4128

Type strain:

Species: Desulfovibrio intestinalis

Strain Designation: KMS2

Culture col. no.: DSM 11275

Strain history: <- H. König, Johannes Gutenberg-Universität Mainz, Germany; KMS2 <- T. Kuhnigk and H. Sass {1996}

NCBI tax ID(s): 1121454 (strain), 58621 (species)

SI-ID 49064

DSM 11275

Special Collections

DSMZ

Other strains from Desulfovibrio intestinalis

Section

Desulfovibrio intestinalis KMS2 is an anaerobe, Gram-negative bacterium that was isolated from hindgut of termite Mastotermes darwiniensis.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Desulfovibrio*
	Species	**Desulfovibrio intestinalis**
	Full Scientific Name (LPSN)	Desulfovibrio intestinalis Fröhlich et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4277]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #4277]

Culture medium growth

[Ref.: #4277]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4277]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4277]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4277]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4277]	Sample type/isolated from	hindgut of termite Mastotermes darwiniensis
[Ref.: #4277]	Host species	Mastotermes darwiniensis
[Ref.: #4277]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #4277]	Country	Germany
[Ref.: #4277]	Country ISO 3 Code	DEU
[Ref.: #4277]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y12254 (>99% sequence identity) for Desulfovibrio simplex from Microbeatlas

Aquatic Samples	688
Soil Samples	17
Animal Samples	256
Plant Samples	26
Total Samples	987

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4277]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4277]	Desulfovibrio intestinalis 16S rRNA gene, strain KMS2	Y12254	1509	GenBank ENA	58621 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfovibrio intestinalis DSM 11275	GCA_014202345	scaffold	GenBank ENA	58621 tax ID	*
[Ref.: #66792]	Desulfovibrio intestinalis strain DSM 11275	58621.3	wgs	PATRIC	58621 tax ID	*
[Ref.: #66792]	Desulfovibrio intestinalis DSM 11275	2861449170	draft	JGI IMG/M	58621 tax ID	*

[Ref.: #4277]

GC-content

54.5-55.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio intestinalis DSM 11275 NCBI: GCA_014202345.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio intestinalis DSM 11275 NCBI: GCA_014202345.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	83.85	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.95	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.159	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	82.498	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	84.702	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.825	no

Availability in culture collections External links

[Ref.: #4277]

Culture collection no.

DSM 11275

[Ref.: #73631]

SI-ID 49064

References

#4277

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11275

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73631

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49064.1 )

* These data were automatically processed and therefore are not curated

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Desulfovibrio intestinalis DSM 11275

Desulfovibrio intestinalis DSM 11275

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