Strain identifier
BacDive ID: 4128
Type strain: 
Species: Desulfovibrio intestinalis
Strain Designation: KMS2
Strain history: <- H. König, Johannes Gutenberg-Universität Mainz, Germany; KMS2 <- T. Kuhnigk and H. Sass {1996}
NCBI tax ID(s): 1121454 (strain), 58621 (species)
version 8.1 (current version)
General
@ref: 4277
BacDive-ID: 4128
DSM-Number: 11275
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Desulfovibrio intestinalis KMS2 is an anaerobe, mesophilic, motile bacterium that was isolated from hindgut of termite Mastotermes darwiniensis.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 58621 | species |
| 1121454 | strain |
strain history
- @ref: 4277
- history: <- H. König, Johannes Gutenberg-Universität Mainz, Germany; KMS2 <- T. Kuhnigk and H. Sass {1996}
doi: 10.13145/bacdive4128.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfovibrio
- species: Desulfovibrio intestinalis
- full scientific name: Desulfovibrio intestinalis Fröhlich et al. 1999
@ref: 4277
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio intestinalis
full scientific name: Desulfovibrio intestinalis Fröhlich et al. 1999
strain designation: KMS2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.783 | |
| 69480 | 99.999 | negative |
Culture and growth conditions
culture medium
- @ref: 4277
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 4277
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 4277 | anaerobe | |
| 69480 | anaerobe | 98.945 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.989 |
Isolation, sampling and environmental information
isolation
- @ref: 4277
- sample type: hindgut of termite Mastotermes darwiniensis
- host species: Mastotermes darwiniensis
- geographic location: Berlin
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_24656.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_139;96_2534;97_3095;98_18547;99_24656&stattab=map
- Last taxonomy: Desulfovibrio simplex
- 16S sequence: Y12254
- Sequence Identity:
- Total samples: 987
- soil counts: 17
- aquatic counts: 688
- animal counts: 256
- plant counts: 26
Safety information
risk assessment
- @ref: 4277
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4277
- description: Desulfovibrio intestinalis 16S rRNA gene, strain KMS2
- accession: Y12254
- length: 1509
- database: ena
- NCBI tax ID: 58621
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfovibrio intestinalis DSM 11275 | GCA_014202345 | scaffold | ncbi | 58621 |
| 66792 | Desulfovibrio intestinalis strain DSM 11275 | 58621.3 | wgs | patric | 58621 |
| 66792 | Desulfovibrio intestinalis DSM 11275 | 2861449170 | draft | img | 58621 |
GC content
- @ref: 4277
- GC-content: 54.5-55.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 50.969 | no |
| gram-positive | no | 97.702 | no |
| anaerobic | yes | 98.165 | yes |
| aerobic | no | 96.446 | yes |
| halophile | no | 91.734 | no |
| spore-forming | no | 91.517 | no |
| glucose-util | no | 60.487 | no |
| thermophile | no | 97.534 | yes |
| motile | yes | 86.801 | no |
| glucose-ferment | no | 75.591 | no |
External links
@ref: 4277
culture collection no.: DSM 11275
straininfo link
- @ref: 73631
- straininfo: 49064
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4277 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11275) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11275 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73631 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49064.1 | StrainInfo: A central database for resolving microbial strain identifiers |