Name: Desulfocurvus vexinensis VNs36
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4069

Type strain:

Species: Desulfocurvus vexinensis

Strain Designation: VNs36

Culture col. no.: DSM 17965, JCM 14038, AS As36, AS 36

Strain history: M.-L. Fardeau VNs36.

NCBI tax ID(s): 1121406 (strain), 399548 (species)

SI-ID 402238

DSM 17965

Section

Desulfocurvus vexinensis VNs36 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from well water from a deep aquifer.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Desulfocurvus*
	Species	**Desulfocurvus vexinensis**
	Full Scientific Name (LPSN)	Desulfocurvus vexinensis Klouche et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29292]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #29292]	Cell length	4 µm

[Ref.: #29292]	Cell width	0.5 µm

[Ref.: #29292]	Cell shape	rod-shaped

[Ref.: #29292]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.395

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7297]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #7297]

Culture medium growth

[Ref.: #7297]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7297]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7297]	growth	37 °C
[Ref.: #29292]	growth	20-50 °C
[Ref.: #29292]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #7297]	Temperature range	mesophilic
[Ref.: #29292]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29292]			optimum	6.9
[Ref.: #29292]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7297]	Oxygen tolerance	anaerobe
[Ref.: #29292]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.649

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.826

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29292]		NaCl		growth	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29292]	acetate ChEBI	+	carbon source
[Ref.: #29292]	formate ChEBI	+	carbon source
[Ref.: #29292]	lactate ChEBI	+	carbon source
[Ref.: #29292]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7297]	Sample type/isolated from	well water from a deep aquifer
[Ref.: #7297]	Geographic location (country and/or sea, region)	Paris Basin
[Ref.: #7297]	Country	France
[Ref.: #7297]	Country ISO 3 Code	FRA
[Ref.: #7297]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Deep artesian well in the Paris Basin
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ841177 (>99% sequence identity) for Desulfocurvus vexinensis from Microbeatlas

Aquatic Samples	394
Soil Samples	73
Animal Samples	28
Plant Samples	6
Total Samples	501

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7297]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7297]	Desulfocurvus vexinensis strain VNs36 16S ribosomal RNA gene, partial sequence	DQ841177	1532	ENA	1121406 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfocurvus vexinensis DSM 17965	GCA_000519125	scaffold	GenBank	1121406 tax ID
[Ref.: #66792]	Desulfocurvus vexinensis DSM 17965	1121406.3	wgs	PATRIC	1121406 tax ID	*
[Ref.: #66792]	Desulfocurvus vexinensis DSM 17965	2541046937	draft	JGI IMG/M	1121406 tax ID	*

[Ref.: #7297]	GC-content	67.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29292]	GC-content	67.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfocurvus vexinensis DSM 17965 DSM 17965 NCBI: GCA_000519125.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfocurvus vexinensis DSM 17965 PATRIC: 1121406.3
[Ref.: #69480]	motile	yes	92.111	yes
[Ref.: #69480]	flagellated	yes	55.444	no
[Ref.: #69480]	gram-positive	no	99.084	yes
[Ref.: #69480]	anaerobic	yes	99.467	no
[Ref.: #69480]	aerobic	no	99.162	no
[Ref.: #69480]	halophile	no	56.397	no
[Ref.: #69480]	spore-forming	no	94.217	no
[Ref.: #69480]	glucose-util	no	57.873	no
[Ref.: #69480]	thermophile	no	92.892	yes
[Ref.: #69480]	glucose-ferment	no	82.215	no

Availability in culture collections External links

[Ref.: #7297]

Culture collection no.

DSM 17965, JCM 14038, AS As36, AS 36

[Ref.: #73572]

SI-ID 402238

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfocurvus vexinensis gen. nov., sp. nov., a sulfate-reducing bacterium isolated from a deep subsurface aquifer.	Klouche N, Basso O, Lascourreges JF, Cayol JL, Thomas P, Fauque G, Fardeau ML, Magot M	Int J Syst Evol Microbiol	10.1099/ijs.0.010363-0	2009	*

References

#7297

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17965

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29292

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25708 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73572

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402238.1 )

#25708

IJSEM 3100 2009 ( DOI 10.1099/ijs.0.010363-0 , PubMed 19643880 )

* These data were automatically processed and therefore are not curated

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Desulfocurvus vexinensis DSM 17965 DSM 17965

Desulfocurvus vexinensis DSM 17965

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