Name: Thermodesulfomicrobium thermophilum P6-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4062

Type strain:

Species: Thermodesulfomicrobium thermophilum

Strain Designation: P6-2

Culture col. no.: DSM 16697, CCUG 49732

Strain history: <- J. M. Cifuentes, Pontificia Univ. Javeriana, Bogotá, Colombia; P6-2 <- F. Thevenieau {2002}

NCBI tax ID(s): 1121412 (strain), 380392 (species)

SI-ID 401819

DSM 16697, CCUG 49732

Special Collections

DSMZ
CCUG

Section

Thermodesulfomicrobium thermophilum P6-2 is an anaerobe bacterium that was isolated from terrestrial hot spring.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfomicrobiaceae*
	Genus	*Thermodesulfomicrobium*
	Species	**Thermodesulfomicrobium thermophilum**
	Full Scientific Name (LPSN)	Thermodesulfomicrobium thermophilum (Thevenieau et al. 2007) Galushko and Kuever 2021

Synonym

Desulfomicrobium thermophilum

Information on morphological and physiological properties Morphology

[Ref.: #58685]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6571]

Culture medium

DESULFOBACTER MEDIUM (DSMZ Medium 193)

[Ref.: #6571]

Culture medium growth

[Ref.: #6571]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6571]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6571]			growth	55 °C
[Ref.: #58685]			growth	42-56 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6571]	Oxygen tolerance	anaerobe
[Ref.: #58685]	Oxygen tolerance	anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6571]	Sample type/isolated from	terrestrial hot spring
[Ref.: #6571]	Geographic location (country and/or sea, region)	Paipa
[Ref.: #6571]	Country	Colombia
[Ref.: #6571]	Country ISO 3 Code	COL
[Ref.: #6571]	Continent	Middle and South America

[Ref.: #58685]	Sample type/isolated from	Spring,geothermal
[Ref.: #58685]	Geographic location (country and/or sea, region)	Andean region,Escuela La Playa
[Ref.: #58685]	Country	Colombia
[Ref.: #58685]	Country ISO 3 Code	COL
[Ref.: #58685]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY464939 (>99% sequence identity) for Desulfomicrobium thermophilum subclade from Microbeatlas

Aquatic Samples	106
Soil Samples	24
Animal Samples	23
Plant Samples	5
Total Samples	158

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6571]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6571]	Desulfomicrobium thermophilum strain P6.2 16S ribosomal RNA gene, partial sequence	AY464939	1518	GenBank ENA	380392 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfomicrobium thermophilum DSM 16697	2571042920	draft	JGI IMG/M	1121412 tax ID	*

[Ref.: #6571]

GC-content

58.7 mol%

Availability in culture collections External links

[Ref.: #6571]

Culture collection no.

DSM 16697, CCUG 49732

[Ref.: #73565]

SI-ID 401819

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfomicrobium thermophilum sp. nov., a novel thermophilic sulphate-reducing bacterium isolated from a terrestrial hot spring in Colombia.	Thevenieau F, Fardeau ML, Ollivier B, Joulian C, Baena S	Extremophiles	10.1007/s00792-006-0039-9	2006	*

References

#6571

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16697

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#58685 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49732

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73565

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401819.1 )

* These data were automatically processed and therefore are not curated

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