Name: Desulfonatronum lacustre Z-7951
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4063

Type strain:

Species: Desulfonatronum lacustre

Strain Designation: Z-7951

Culture col. no.: DSM 10312

Strain history: <- T. Zhilina; Z-7951 <- E. Pikuta {1995}

NCBI tax ID(s): 935942 (strain), 66849 (species)

SI-ID 48807

DSM 10312

Special Collections

DSMZ

Other strains from Desulfonatronum lacustre

Section

Desulfonatronum lacustre Z-7951 is an anaerobe, Gram-negative bacterium that was isolated from mud from alkaline lake.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfonatronaceae*
	Genus	*Desulfonatronum*
	Species	**Desulfonatronum lacustre**
	Full Scientific Name (LPSN)	Desulfonatronum lacustre Pikuta et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.02

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3899]

Culture medium

DESULFONATRONUM MEDIUM (DSMZ Medium 813)

[Ref.: #3899]

Culture medium growth

[Ref.: #3899]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3899]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3899]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3899]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %91.045

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3899]	Sample type/isolated from	mud from alkaline lake
[Ref.: #3899]	Geographic location (country and/or sea, region)	Tyva Republic, Lake Khadyn
[Ref.: #3899]	Country	Russia
[Ref.: #3899]	Country ISO 3 Code	RUS
[Ref.: #3899]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3899]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3899]	Desulfonatronum lacustre 16S rRNA gene, partial	Y14594	1363	GenBank ENA	935942 tax ID
[Ref.: #20218]	Desulfonatronum lacustre DSM 10312 16S ribosomal RNA gene, partial sequence	AF418171	1525	GenBank ENA	935942 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfonatronum lacustre DSM 10312	GCA_000519265	scaffold	GenBank ENA	935942 tax ID	*
[Ref.: #66792]	Desulfonatronum lacustre DSM 10312	935942.4	wgs	PATRIC	935942 tax ID	*
[Ref.: #66792]	Desulfonatronum lacustre Z-7951, DSM 10312	2516143004	draft	JGI IMG/M	935942 tax ID	*

[Ref.: #3899]

GC-content

57.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfonatronum lacustre DSM 10312 DSM 10312 NCBI: GCA_000519265.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	63	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfonatronum lacustre DSM 10312 DSM 10312 NCBI: GCA_000519265.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.02	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.045	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.31	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	82.462	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.762	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.231	no

Availability in culture collections External links

[Ref.: #3899]

Culture collection no.

DSM 10312

[Ref.: #73566]

SI-ID 48807

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfonatronum zhilinae sp. nov., a novel haloalkaliphilic sulfate-reducing bacterium from soda Lake Alginskoe, Trans-Baikal Region, Russia.	Zakharyuk AG, Kozyreva LP, Khijniak TV, Namsaraev BB, Shcherbakova VA	Extremophiles	10.1007/s00792-015-0747-0	2015	*
Phylogeny	Desulfonatronum thiodismutans sp. nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth.	Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Cleland D, Krader P	Int J Syst Evol Microbiol	10.1099/ijs.0.02598-0	2003	*

References

#3899

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10312

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73566

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48807.1 )

* These data were automatically processed and therefore are not curated

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Desulfonatronum lacustre DSM 10312 DSM 10312

Desulfonatronum lacustre DSM 10312 DSM 10312

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