Desulfohalobium retbaense (DSM 5692, JCM 16813, HR100)

Name: Desulfohalobium retbaense (DSM 5692, JCM 16813, HR100)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4043

Type strain

Strain Designation HR100, HR₁₀₀

Culture col. no. DSM 5692 JCM 16813 HR100 ATCC 49708 HR₁₀₀

NCBI tax ID(s) 485915 45663

Special Collections DSMZ JCM Literature strains

History <- J.-L. Garcia, Université de Provence, Marseille, France; HR₁₀₀ <- B. Ollivier {1989} DSM 5692 <-- J.-L. Garcia HR₁₀₀.

Links

Desulfohalobium retbaense HR100 is an anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from saline sediment.

Gram-negative motile rod-shaped colony-forming anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47983

DSM 5692,ATCC 49708,JCM 16813

@ref 20215

Last LPSN update 2026-02-09 11:18:38

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfohalobiaceae

Genus Desulfohalobium

Species Desulfohalobium retbaense

Full scientific name Desulfohalobium retbaense Ollivier et al. 1991

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43365	negative	1-3 µm	0.7-0.9 µm	rod-shaped	polar
125439	negative					95.8
125438	negative					95.983

Colony morphology

@ref	Colony shape	Incubation period
43365	circular	30 days

Multimedia

@ref:	66793
multimedia content:	EM_DSM_5692_1.jpg
multimedia.multimedia content:	EM_DSM_5692_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2289	DESULFOHALOBIUM MEDIUM (DSMZ Medium 499)	Medium recipe at MediaDive	Name: DESULFOHALOBIUM MEDIUM (DSMZ Medium 499) Composition: NaCl 100.0 g/l MgCl2 x 6 H2O 20.0 g/l KCl 4.0 g/l Na2SO4 3.0 g/l CaCl2 x 2 H2O 2.7 g/l Na-(L)-lactate 2.5 g/l Na-acetate 1.0 g/l Trypticase peptone 1.0 g/l Yeast extract 1.0 g/l NH4Cl 1.0 g/l K2HPO4 0.3 g/l KH2PO4 0.3 g/l Na2S x 9 H2O 0.3 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l NaOH 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
43365			50% water from the lake, sulfate, H2, 1 g of acetate per liter
43365			per liter: 1.0g NH4Cl, 0.3g K2HPO4, 20g MgCl2*6H2O, 2g CaCl2, 4g KCL, 0.3g KH2PO4, 3g Na2SO4, 100g NaCl, 1g sodium acetate, 0.001g resazurin, 1mL trace element solution, 1mL sodium selenite solution

Culture temp

@ref	Growth	Type	Temperature (°C)
2289	positive	growth	35
43365	negative	growth	45-52
43365	positive	optimum	37-40
67770	positive	growth	35

Culture pH

@ref	Ability	Type	PH
43365	positive	optimum	6.5-7
43365	positive	growth	5.5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
2289	anaerobe
43365	obligate anaerobe
125439	anaerobe	97.9

Spore formation

@ref	Spore formation	Confidence
43365
125439		95.9
125438		92.394

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43365	NaCl	positive	growth	5-24 %
43365	NaCl	positive	optimum	10 %

Observation

43365

ObservationNaCl and MgCl2 are required for growth

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43365	15354 ChEBI	choline	-	assimilation
43365	33403 ChEBI	elemental sulfur	+	electron acceptor
43365	16236 ChEBI	ethanol	+/-	oxidation
43365	28757 ChEBI	fructose	-	assimilation
43365	29806 ChEBI	fumarate	-	assimilation
43365	17234 ChEBI	glucose	-	assimilation
43365	17754 ChEBI	glycerol	-	assimilation
43365	24996 ChEBI	lactate	+/-	oxidation
43365	25115 ChEBI	malate	-	assimilation
43365	15361 ChEBI	pyruvate	+	fermentation
43365	15361 ChEBI	pyruvate	+/-	oxidation
43365	30031 ChEBI	succinate	-	assimilation
43365	16189 ChEBI	sulfate	+	electron acceptor
43365	17359 ChEBI	sulfite	+	electron acceptor
43365	16094 ChEBI	thiosulfate	+	electron acceptor
43365		yeast extract	-	assimilation

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	chorismate metabolism	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	hydrogen production	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	starch degradation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipoate biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	nitrate assimilation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	purine metabolism	69.15	65 of 94
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	NAD metabolism	66.67	12 of 18
66794	methionine metabolism	65.38	17 of 26
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	oxidative phosphorylation	64.84	59 of 91
66794	heme metabolism	64.29	9 of 14
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	proline metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	alanine metabolism	62.07	18 of 29
66794	cellulose degradation	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	citric acid cycle	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	d-mannose degradation	55.56	5 of 9
66794	vitamin B6 metabolism	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	lipid metabolism	51.61	16 of 31
66794	myo-inositol biosynthesis	50	5 of 10
66794	denitrification	50	1 of 2
66794	degradation of sugar alcohols	50	8 of 16
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	gluconeogenesis	50	4 of 8
66794	Entner Doudoroff pathway	50	5 of 10
66794	suberin monomers biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	histidine metabolism	48.28	14 of 29
66794	tryptophan metabolism	47.37	18 of 38
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	glutathione metabolism	42.86	6 of 14
66794	tyrosine metabolism	42.86	6 of 14
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	ketogluconate metabolism	37.5	3 of 8
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	degradation of pentoses	32.14	9 of 28
66794	urea cycle	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	d-xylose degradation	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	vitamin B12 metabolism	23.53	8 of 34
66794	ascorbate metabolism	22.73	5 of 22
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Saline	-
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
2289	saline sediment	Retba Lake	Senegal	SEN	Africa
43365	sediments of Retba Lake, a pink hypersaline Lake	Senegal, Retba Lake	Senegal	SEN	Africa	14	-17 14/-17
67770	Sediments from a hypersaline lake	Ratba Lake, near Dakar	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence X99235 (>99% sequence identity) for Desulfohalobium retbaense subclade from Microbeatlas

Aquatic Samples	494
Soil Samples	46
Animal Samples	65
Plant Samples	10
Total Samples	615

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2289	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2432v1 assembly for Desulfohalobium retbaense DSM 5692	complete	GCA_000024325	485915.5	644736349	485915	99.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Desulfohalobium retbaense 16S ribosomal RNA gene	U48244	1548		485915
20218	D.retbaense 16S rRNA gene	X99235	1506		485915

GC content

@ref	GC-content (mol%)	Method
2289	57.1
43365	56.9-57.3	high performance liquid chromatography (HPLC)
67770	57.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfohalobium retbaense DSM 5692
NCBI: GCA_000024325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.90	no
125439	motility	BacteriaNetⓘ	yes	68.10	no
125439	gram_stain	BacteriaNetⓘ	negative	95.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfohalobium retbaense DSM 5692 DSM 5692
NCBI: GCA_000024325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.98	no
125438	anaerobic	anaerobicⓘ	yes	85.24	no
125438	aerobic	aerobicⓘ	no	87.91	yes
125438	spore-forming	spore-formingⓘ	no	92.39	yes
125438	thermophilic	thermophileⓘ	no	87.25	yes
125438	flagellated	motile2+ⓘ	yes	81.79	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	BONCAT-Live for isolation and cultivation of active environmental bacteria.	Mulay SA, Vishnivetskaya TA, Hochanadel LH, Klingeman DM, Lloyd KG, Pelletier DA, Podar M.	mBio	10.1128/mbio.02389-25	2025
	ComFB, a widespread family of c-di-NMP receptor proteins.	Samir S, Elshereef AA, Alva V, Hahn J, Eck F, Celma L, Lopes ES, Thormann K, Dubnau D, Galperin MY, Selim KA.	Proc Natl Acad Sci U S A	10.1073/pnas.2513041122	2025
Phylogeny	The Microbial Community and Functional Potential in the Midland Basin Reveal a Community Dominated by Both Thiosulfate and Sulfate-Reducing Microorganisms.	Tinker K, Lipus D, Gardiner J, Stuckman M, Gulliver D.	Microbiol Spectr	10.1128/spectrum.00049-22	2022
	Phenomics and Genomics Reveal Adaptation of Virgibacillus dokdonensis Strain 21D to Its Origin of Isolation, the Seawater-Brine Interface of the Mediterranean Sea Deep Hypersaline Anoxic Basin Discovery.	Zeaiter Z, Marasco R, Booth JM, Prosdocimi EM, Mapelli F, Callegari M, Fusi M, Michoud G, Molinari F, Daffonchio D, Borin S, Crotti E.	Front Microbiol	10.3389/fmicb.2019.01304	2019
	Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).	Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Munk C, Kiss H, Chain P, Han C, Brettin T, Detter JC, Schuler E, Goker M, Rohde M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.	Stand Genomic Sci	10.4056/sigs.581048	2010
Enzymology	A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea.	Pereira IA, Ramos AR, Grein F, Marques MC, da Silva SM, Venceslau SS.	Front Microbiol	10.3389/fmicb.2011.00069	2011
Genetics	Metagenomic analysis of soybean endosphere microbiome to reveal signatures of microbes for health and disease.	Chouhan U, Gamad U, Choudhari JK.	J Genet Eng Biotechnol	10.1186/s43141-023-00535-4	2023
Metabolism	Microscopic Methods for Identification of Sulfate-Reducing Bacteria from Various Habitats.	Kushkevych I, Hyzova B, Vitezova M, Rittmann SKR.	Int J Mol Sci	10.3390/ijms22084007	2021
	Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus.	Sharma G, Narwani T, Subramanian S.	PLoS One	10.1371/journal.pone.0148593	2016
Metabolism	Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification.	Haft DH, Basu MK.	J Bacteriol	10.1128/jb.00040-11	2011
Metabolism	Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes.	Kazakov AE, Rodionov DA, Price MN, Arkin AP, Dubchak I, Novichkov PS.	J Bacteriol	10.1128/jb.01977-12	2013
Metabolism	Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.	Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, Hazen TC, Zhou J.	ISME J	10.1038/ismej.2011.91	2012
	A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.	Crossman LC, Chen H, Cerdeno-Tarraga AM, Brooks K, Quail MA, Pineiro SA, Hobley L, Sockett RE, Bentley SD, Parkhill J, Williams HN, Stine OC.	ISME J	10.1038/ismej.2012.90	2013
Phylogeny	Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group.	Kadnikov VV, Mardanov AV, Podosokorskaya OA, Gavrilov SN, Kublanov IV, Beletsky AV, Bonch-Osmolovskaya EA, Ravin NV.	PLoS One	10.1371/journal.pone.0053047	2013
	Postgenomic analyses reveal development of infectious Anaplasma phagocytophilum during transmission from ticks to mice.	Mastronunzio JE, Kurscheid S, Fikrig E.	J Bacteriol	10.1128/jb.06791-11	2012
Enzymology	Origin and Evolution of Flavin-Based Electron Bifurcating Enzymes.	Poudel S, Dunham EC, Lindsay MR, Amenabar MJ, Fones EM, Colman DR, Boyd ES.	Front Microbiol	10.3389/fmicb.2018.01762	2018
	Sulfite oxidation in chlorobaculum tepidum.	Rodriguez J, Hiras J, Hanson TE.	Front Microbiol	10.3389/fmicb.2011.00112	2011
Enzymology	Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria.	Techtmann SM, Colman AS, Murphy MB, Schackwitz WS, Goodwin LA, Robb FT.	Front Microbiol	10.3389/fmicb.2011.00147	2011
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Genetics	Heterologous Expression and Partial Characterization of a Putative Opine Dehydrogenase from a Metagenomic Sequence of Desulfohalobium retbaense.	Kalicanin N, Balaz AM, Prodanovic O, Prodanovic R.	Chembiochem	10.1002/cbic.202300414	2023
	Microbial hydrogen consumption leads to a significant pH increase under high-saline-conditions: implications for hydrogen storage in salt caverns.	Dopffel N, Mayers K, Kedir A, Alagic E, An-Stepec BA, Djurhuus K, Boldt D, Beeder J, Hoth S.	Sci Rep	10.1038/s41598-023-37630-y	2023
	Polymer biodegradation by Halanaerobium promotes reservoir souring during hydraulic fracturing.	Scheffer G, Chakraborty A, Amundson KK, Khan R, Wilkins MJ, Evans P, Hubert CRJ.	Appl Environ Microbiol	10.1128/aem.02253-24	2025
	Exploring Microbiological Dynamics in a Salt Cavern for Potential Hydrogen Storage Use.	Dopffel N, Mayers K, Kedir A, An-Stepec BA, Beeder J, Hoth S.	Environ Microbiol Rep	10.1111/1758-2229.70064	2025
Genetics	Characterisation of caecum and crop microbiota of Indian indigenous chicken targeting multiple hypervariable regions within 16S rRNA gene.	Saxena S, Saxena VK, Tomar S, Sapcota D, Gonmei G.	Br Poult Sci	10.1080/00071668.2016.1161728	2016
	Running against the clock: exploring microbial diversity in an extremely endangered microbial oasis in the Chihuahuan Desert.	Rodriguez-Cruz UE, Ochoa-Sanchez M, Eguiarte LE, Souza V.	FEMS Microbiol Ecol	10.1093/femsec/fiaf033	2025
Genetics	Phylogeography, Salinity Adaptations and Metabolic Potential of the Candidate Division KB1 Bacteria Based on a Partial Single Cell Genome.	Nigro LM, Hyde AS, MacGregor BJ, Teske A.	Front Microbiol	10.3389/fmicb.2016.01266	2016
Transcriptome	Transcriptome-wide marker gene expression analysis of stress-responsive sulfate-reducing bacteria.	Jawaharraj K, Peta V, Dhiman SS, Gnimpieba EZ, Gadhamshetty V.	Sci Rep	10.1038/s41598-023-43089-8	2023
Phylogeny	Niche Differentiation of Arsenic-Transforming Microbial Groups in the Rice Rhizosphere Compartments as Impacted by Water Management and Soil-Arsenic Concentrations.	Somenahally AC, Loeppert RH, Zhou J, Gentry TJ.	Front Microbiol	10.3389/fmicb.2021.736751	2021
Metabolism	Evidence of interspecies hydrogen transfer from glycerol in saline environments.	Cayol JL, Fardeau ML, Garcia JL, Ollivier B.	Extremophiles	10.1007/s007920100229	2002
Genetics	Going from microbial ecology to genome data and back: studies on a haloalkaliphilic bacterium isolated from Soap Lake, Washington State.	Mormile MR.	Front Microbiol	10.3389/fmicb.2014.00628	2014
	Nitrogen Fertilizer Amendment Alter the Bacterial Community Structure in the Rhizosphere of Rice (Oryza sativa L.) and Improve Crop Yield.	Chen J, Arafat Y, Ud Din I, Yang B, Zhou L, Wang J, Letuma P, Wu H, Qin X, Wu L, Lin S, Zhang Z, Lin W.	Front Microbiol	10.3389/fmicb.2019.02623	2019
	Microbial ecology and biogeochemistry of hypersaline sediments in Orca Basin.	Nigro LM, Elling FJ, Hinrichs KU, Joye SB, Teske A.	PLoS One	10.1371/journal.pone.0231676	2020
	Metabolomic and Metagenomic Analysis of Two Crude Oil Production Pipelines Experiencing Differential Rates of Corrosion.	Bonifay V, Wawrik B, Sunner J, Snodgrass EC, Aydin E, Duncan KE, Callaghan AV, Oldham A, Liengen T, Beech I.	Front Microbiol	10.3389/fmicb.2017.00099	2017
	Long-term surveillance of sulfate-reducing bacteria in highly saline industrial wastewater evaporation ponds.	Ben-Dov E, Kushmaro A, Brenner A.	Saline Syst	10.1186/1746-1448-5-2	2009
	Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium.	Rajeev L, Luning EG, Dehal PS, Price MN, Arkin AP, Mukhopadhyay A.	Genome Biol	10.1186/gb-2011-12-10-r99	2011
Metabolism	New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.	Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS.	J Bacteriol	10.1128/jb.00679-13	2013
	Key Factors Influencing Rates of Heterotrophic Sulfate Reduction in Active Seafloor Hydrothermal Massive Sulfide Deposits.	Frank KL, Rogers KL, Rogers DR, Johnston DT, Girguis PR.	Front Microbiol	10.3389/fmicb.2015.01449	2015
Metabolism	Complete genome sequence of Thermosphaera aggregans type strain (M11TL).	Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CC, Brettin T, Detter JC, Tapia R, Han C, Heimerl T, Weikl F, Brambilla E, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.	Stand Genomic Sci	10.4056/sigs.821804	2010
Phylogeny	Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment.	Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M.	Appl Environ Microbiol	10.1128/aem.68.10.5064-5081.2002	2002
	Anaerobic bacteria from hypersaline environments.	Ollivier B, Caumette P, Garcia JL, Mah RA.	Microbiol Rev	10.1128/mr.58.1.27-38.1994	1994
Metabolism	Nested PCR and new primers for analysis of sulfate-reducing bacteria in low-cell-biomass environments.	Giloteaux L, Goni-Urriza M, Duran R.	Appl Environ Microbiol	10.1128/aem.02023-09	2010
	Complete genome sequence of Archaeoglobus profundus type strain (AV18).	von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Chertkov O, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Saunders E, Brettin T, Detter JC, Chain P, Eichinger K, Huber H, Spring S, Rohde M, Goker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.	Stand Genomic Sci	10.4056/sigs.942153	2010
Metabolism	The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration.	Venceslau SS, Lino RR, Pereira IA.	J Biol Chem	10.1074/jbc.m110.124305	2010
Metabolism	Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth.	Meyer B, Kuehl J, Deutschbauer AM, Price MN, Arkin AP, Stahl DA.	J Bacteriol	10.1128/jb.01959-12	2013
Metabolism	The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.	Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R.	Environ Microbiol	10.1111/j.1462-2920.2010.02242.x	2010
	Salinity responses of benthic microbial communities in a solar saltern (Eilat, Israel).	Sorensen KB, Canfield DE, Oren A.	Appl Environ Microbiol	10.1128/aem.70.3.1608-1616.2004	2004
	The sulfate-rich and extreme saline sediment of the ephemeral tirez lagoon: a biotope for acetoclastic sulfate-reducing bacteria and hydrogenotrophic methanogenic archaea.	Montoya L, Lozada-Chavez I, Amils R, Rodriguez N, Marin I.	Int J Microbiol	10.1155/2011/753758	2011
	Bioenergetic aspects of halophilism.	Oren A.	Microbiol Mol Biol Rev	10.1128/mmbr.63.2.334-348.1999	1999
Metabolism	A novel signal transduction protein: Combination of solute binding and tandem PAS-like sensor domains in one polypeptide chain.	Wu R, Wilton R, Cuff ME, Endres M, Babnigg G, Edirisinghe JN, Henry CS, Joachimiak A, Schiffer M, Pokkuluri PR	Protein Sci	10.1002/pro.3134	2017
Phylogeny	Desulfohalobium utahense sp. nov., a moderately halophilic, sulfate-reducing bacterium isolated from Great Salt Lake.	Jakobsen TF, Kjeldsen KU, Ingvorsen K	Int J Syst Evol Microbiol	10.1099/ijs.0.64323-0	2006

References

#2289	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5692
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#43365	B. Olliver, C. E. Hatchikian, G. Prensier, J. Guezennec, J. L. Garcia: Desulfohalobium retbaense gen. nov., sp. nov., a Halophilic Sulfate-Reducing Bacterium from Sediments of a Hypersaline Lake in Senegal. IJSB 41: 74 - 81 1991 ( DOI 10.1099/00207713-41-1-74 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Desulfohalobium retbaense (DSM 5692, JCM 16813, HR100)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000024325

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media