Desulfothermus naphthae (DSM 13418, JCM 12298, TD3)

Name: Desulfothermus naphthae (DSM 13418, JCM 12298, TD3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4042

Type strain

Strain Designation TD3

Culture col. no. DSM 13418 JCM 12298 TD3

NCBI tax ID(s) 392844

Special Collections DSMZ JCM

History DSMZ <- A. Behrends, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; TD3 <- F. Aeckersberg and C. G. Ehrenberg; {1994} JCM <-- DSM 13418 <-- A. Behrends <-- F. Aeckersberg TD3.

Links

Desulfothermus naphthae TD3 is an anaerobe bacterium that was isolated from marine sediment.

anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49469

DSM 13418,JCM 12298

@ref 20215

Last LPSN update 2026-05-29 08:25:50

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfothermaceae

Genus Desulfothermus

Species Desulfothermus naphthae

Full scientific name Desulfothermus naphthae Kuever et al. 2006

Morphology

Colony morphology

5045

Incubation period>14 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5045	DESULFOTHERMUS NAPHTHAE MEDIUM (DSMZ Medium 876)		Medium recipe at MediaDive	Name: DESULFOTHERMUS NAPHTHAE MEDIUM (DSMZ Medium 876) Composition: NaCl 19.9005 g/l MgCl2 x 6 H2O 9.75124 g/l Na2SO4 3.9801 g/l Na2CO3 0.995025 g/l Na-caproate 0.497512 g/l KCl 0.497512 g/l Na2S x 9 H2O 0.39801 g/l Na-butyrate 0.298507 g/l NH4Cl 0.248756 g/l KH2PO4 0.199005 g/l CaCl2 x 2 H2O 0.0995025 g/l HCl 0.00248756 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000995025 g/l Sodium resazurin 0.000497512 g/l Pyridoxine hydrochloride 0.000298507 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l Nicotinic acid 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l Calcium pantothenate 9.95025e-05 g/l Vitamin B12 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l ZnCl2 6.96517e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l D-(+)-biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l Na2WO4 x 2 H2O 7.9602e-06 g/l H3BO3 5.97015e-06 g/l Na2SeO3 x 5 H2O 5.97015e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5045	positive	growth	55
67770	positive	growth	60

Physiology and metabolism

Oxygen tolerance

5045

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5045	marine sediment	Gulf of California, Guaymas Basin	Mexico	MEX	North America
67770	Guaymas Basin sediment

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5045	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5045	Desulfothermus naphthae 16S rRNA gene, type strain TD3T	X80922	1441		392844

Genome-based predictions

Literature

References

#5045	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13418
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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