Desulfothermus naphthae (DSM 13418, JCM 12298, TD3)

Name: Desulfothermus naphthae (DSM 13418, JCM 12298, TD3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4042

Type strain

Strain Designation TD3

Culture col. no. DSM 13418 JCM 12298 TD3

NCBI tax ID(s) 392844

Special Collections DSMZ JCM

Links

Desulfothermus naphthae TD3 is an anaerobe, thermophilic prokaryote that was isolated from marine sediment.

anaerobe thermophilic 16S sequence

Name and taxonomic classification

SI-ID 49469

DSM 13418,JCM 12298

@ref 20215

Last LPSN update 2025-12-16 09:47:43

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfothermaceae

Genus Desulfothermus

Species Desulfothermus naphthae

Full scientific name Desulfothermus naphthae Kuever et al. 2006

Morphology

Colony morphology

5045

Incubation period>14 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5045	DESULFOTHERMUS NAPHTHAE MEDIUM (DSMZ Medium 876)		Medium recipe at MediaDive	Name: DESULFOTHERMUS NAPHTHAE MEDIUM (DSMZ Medium 876) Composition: NaCl 19.9005 g/l MgCl2 x 6 H2O 9.75124 g/l Na2SO4 3.9801 g/l Na2CO3 0.995025 g/l Na-caproate 0.497512 g/l KCl 0.497512 g/l Na2S x 9 H2O 0.39801 g/l Na-butyrate 0.298507 g/l NH4Cl 0.248756 g/l KH2PO4 0.199005 g/l CaCl2 x 2 H2O 0.0995025 g/l HCl 0.00248756 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000995025 g/l Sodium resazurin 0.000497512 g/l Pyridoxine hydrochloride 0.000298507 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l Nicotinic acid 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l Calcium pantothenate 9.95025e-05 g/l Vitamin B12 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l ZnCl2 6.96517e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l D-(+)-biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l Na2WO4 x 2 H2O 7.9602e-06 g/l H3BO3 5.97015e-06 g/l Na2SeO3 x 5 H2O 5.97015e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5045	positive	growth	55	thermophilic
67770	positive	growth	60	thermophilic

Physiology and metabolism

Oxygen tolerance

5045

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5045	marine sediment	Gulf of California, Guaymas Basin	Mexico	MEX	North America
67770	Guaymas Basin sediment

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5045	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5045	Desulfothermus naphthae 16S rRNA gene, type strain TD3T	X80922	1441		392844

Genome-based predictions

Literature

References

#5045	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13418
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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