Name: Kangiella aquimarina SW-154
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 397

Type strain:

Species: Kangiella aquimarina

Strain Designation: SW-154

Culture col. no.: DSM 16071, KCTC 12183, JCM 12318

Strain history: <- J.H. Yoon

NCBI tax ID(s): 1122134 (strain), 261965 (species)

SI-ID 134291

DSM 16071, KCTC 12183, JCM 12318

Section

Kangiella aquimarina SW-154 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Kangiellaceae*
	Genus	*Kangiella*
	Species	**Kangiella aquimarina**
	Full Scientific Name (LPSN)	Kangiella aquimarina Yoon et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31263]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #31263]	Cell length	3 µm

[Ref.: #31263]	Cell width	0.35 µm

[Ref.: #31263]	Cell shape	rod-shaped

[Ref.: #31263]	Motility	no

[Ref.: #31263]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6257]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6257]

Culture medium growth

[Ref.: #6257]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6257]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6257]	growth	30 °C
[Ref.: #31263]	growth	10-37 °C
[Ref.: #31263]	optimum	33.5 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #6257]	Temperature range	mesophilic
[Ref.: #31263]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31263]			optimum	7.5
[Ref.: #31263]			growth	5.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31263]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31263]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31263]		NaCl		growth	01-12	%
[Ref.: #31263]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31263]	gelatin ChEBI	+	carbon source
[Ref.: #31263]	leucine ChEBI	+	carbon source
[Ref.: #31263]	nitrate ChEBI	+	reduction
[Ref.: #31263]	tween 20 ChEBI	+	carbon source
[Ref.: #31263]	tween 40 ChEBI	+	carbon source
[Ref.: #31263]	tween 60 ChEBI	+	carbon source
[Ref.: #31263]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31263]	acid phosphatase	+	3.1.3.2
[Ref.: #31263]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31263]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31263]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6257]	Sample type/isolated from	sea water of tidal flat
[Ref.: #6257]	Country	Republic of Korea
[Ref.: #6257]	Country ISO 3 Code	KOR
[Ref.: #6257]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment collected from Daepo Beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment of the Yellow Sea in Korea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY520561 (>99% sequence identity) for Kangiella from Microbeatlas

Aquatic Samples	628
Soil Samples	163
Animal Samples	139
Plant Samples	48
Total Samples	978

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6257]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6257]	Kangiella aquimarina 16S ribosomal RNA gene, partial sequence	AY520561	1496	ENA	261965 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kangiella aquimarina DSM 16071	GCA_000374105	scaffold	GenBank	1122134 tax ID
[Ref.: #66792]	Kangiella aquimarina DSM 16071	1122134.4	wgs	PATRIC	1122134 tax ID	*
[Ref.: #66792]	Kangiella aquimarina DSM 16071	2515154212	draft	JGI IMG/M	261965 tax ID	*

[Ref.: #31263]	GC-content	44 mol%
[Ref.: #67770]	GC-content	44 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kangiella aquimarina DSM 16071 DSM 16071 NCBI: GCA_000374105.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kangiella aquimarina DSM 16071 PATRIC: 1122134.4
[Ref.: #69480]	motile	no	87.538	yes
[Ref.: #69480]	flagellated	no	91.23	yes
[Ref.: #69480]	gram-positive	no	98.871	yes
[Ref.: #69480]	anaerobic	no	98.672	no
[Ref.: #69480]	halophile	no	82.097	no
[Ref.: #69480]	spore-forming	no	95.764	no
[Ref.: #69480]	thermophile	no	98.713	no
[Ref.: #69480]	glucose-util	yes	78.625	no
[Ref.: #69480]	aerobic	yes	77.174	no
[Ref.: #69480]	glucose-ferment	no	86.575	no

Availability in culture collections External links

[Ref.: #6257]

Culture collection no.

DSM 16071, KCTC 12183, JCM 12318

[Ref.: #70077]

SI-ID 134291

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliikangiella marina gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122, and proposal of Kangiellaceae fam. nov. in the order Oceanospirillales.	Wang G, Tang M, Wu H, Dai S, Li T, Chen C, He H, Fan J, Xiang W, Li X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000601	2015	*
Phylogeny	Kangiella spongicola sp. nov., a halophilic marine bacterium isolated from the sponge Chondrilla nucula.	Ahn J, Park JW, McConnell JA, Ahn YB, Haggblom MM	Int J Syst Evol Microbiol	10.1099/ijs.0.021733-0	2010	*
Phylogeny	Kangiella japonica sp. nov., isolated from a marine environment.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.017087-0	2009	*
Phylogeny	Kangiella koreensis gen. nov., sp. nov. and Kangiella aquimarina sp. nov., isolated from a tidal flat of the Yellow Sea in Korea.	Yoon JH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.63156-0	2004	*

References

#6257

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16071

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31263

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27584 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70077

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134291.1 )

#27584

IJSEM 1829 2004 ( DOI 10.1099/ijs.0.63156-0 , PubMed 15388751 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Kangiella aquimarina in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Kangiella aquimarina DSM 16071 DSM 16071

Kangiella aquimarina DSM 16071

Change proposal

Change proposal