Strain identifier

BacDive ID: 397

Type strain: Yes

Species: Kangiella aquimarina

Strain Designation: SW-154

Strain history: <- J.H. Yoon

NCBI tax ID(s): 1122134 (strain), 261965 (species)

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General

@ref: 6257

BacDive-ID: 397

DSM-Number: 16071

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Kangiella aquimarina SW-154 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.

NCBI tax id

NCBI tax idMatching level
261965species
1122134strain

strain history

@refhistory
6257<- J.-H. Yoon; SW154
67770J.-H. Yoon SW-154.
67771<- J.H. Yoon

doi: 10.13145/bacdive397.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Kangiellaceae
  • genus: Kangiella
  • species: Kangiella aquimarina
  • full scientific name: Kangiella aquimarina Yoon et al. 2004

@ref: 6257

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Kangiellaceae

genus: Kangiella

species: Kangiella aquimarina

full scientific name: Kangiella aquimarina Yoon et al. 2004

strain designation: SW-154

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31263negative3 µm0.35 µmrod-shapedno
67771negative
69480negative99.995

pigmentation

  • @ref: 31263
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 6257
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6257positivegrowth30mesophilic
31263positivegrowth10-37
31263positiveoptimum33.5mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31263positivegrowth5.5-8.0
31263positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31263anaerobe
67771aerobe

spore formation

@refspore formationconfidence
31263no
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
31263NaClpositivegrowth01-12 %
31263NaClpositiveoptimum2.5 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
312635291gelatin+carbon source
3126325017leucine+carbon source
3126353424tween 20+carbon source
3126353423tween 40+carbon source
3126353425tween 60+carbon source
3126353426tween 80+carbon source
3126317632nitrate+reduction

enzymes

@refvalueactivityec
31263acid phosphatase+3.1.3.2
31263alkaline phosphatase+3.1.3.1
31263gelatinase+
31263cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6257sea water of tidal flatRepublic of KoreaKORAsia
67770Tidal flat sediment collected from Daepo BeachRepublic of KoreaKORAsiaYellow Sea
67771From tidal flat sediment of the Yellow Sea in KoreaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_5333.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15954;96_2042;97_2463;98_3045;99_5333&stattab=map
  • Last taxonomy: Kangiella
  • 16S sequence: AY520561
  • Sequence Identity:
  • Total samples: 978
  • soil counts: 163
  • aquatic counts: 628
  • animal counts: 139
  • plant counts: 48

Safety information

risk assessment

  • @ref: 6257
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6257
  • description: Kangiella aquimarina 16S ribosomal RNA gene, partial sequence
  • accession: AY520561
  • length: 1496
  • database: ena
  • NCBI tax ID: 261965

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kangiella aquimarina DSM 160711122134.4wgspatric1122134
66792Kangiella aquimarina DSM 160712515154212draftimg261965
67770Kangiella aquimarina DSM 16071GCA_000374105scaffoldncbi1122134

GC content

@refGC-contentmethod
3126344
6777044high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.538yes
flagellatedno91.23yes
gram-positiveno98.871yes
anaerobicno98.672no
halophileno82.097no
spore-formingno95.764no
thermophileno98.713no
glucose-utilyes78.625no
aerobicyes77.174no
glucose-fermentno86.575no

External links

@ref: 6257

culture collection no.: DSM 16071, KCTC 12183, JCM 12318

straininfo link

  • @ref: 70077
  • straininfo: 134291

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15388751Kangiella koreensis gen. nov., sp. nov. and Kangiella aquimarina sp. nov., isolated from a tidal flat of the Yellow Sea in Korea.Yoon JH, Oh TK, Park YHInt J Syst Evol Microbiol10.1099/ijs.0.63156-02004Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Growth Inhibitors/pharmacology, Korea, Molecular Sequence Data, Movement, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/pharmacology, Seawater/*microbiology, Sequence Analysis, DNA, Spores, Bacterial, Temperature, Ubiquinone/analysis, Water MicrobiologyEnzymology
Phylogeny20023058Kangiella japonica sp. nov., isolated from a marine environment.Romanenko LA, Tanaka N, Frolova GM, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.017087-02009Alcanivoraceae/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyGenetics
Phylogeny20511465Kangiella spongicola sp. nov., a halophilic marine bacterium isolated from the sponge Chondrilla nucula.Ahn J, Park JW, McConnell JA, Ahn YB, Haggblom MMInt J Syst Evol Microbiol10.1099/ijs.0.021733-02010Aerobiosis, Animals, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Florida, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureGenetics
Phylogeny26363841Aliikangiella marina gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122, and proposal of Kangiellaceae fam. nov. in the order Oceanospirillales.Wang G, Tang M, Wu H, Dai S, Li T, Chen C, He H, Fan J, Xiang W, Li XInt J Syst Evol Microbiol10.1099/ijsem.0.0006012015Base Composition, Chlorophyta/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Indian Ocean, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6257Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16071)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16071
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31263Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2758428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70077Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134291.1StrainInfo: A central database for resolving microbial strain identifiers