Name: Barrientosiimonas humi 39
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3935

Type strain:

Species: Barrientosiimonas humi

Strain Designation: 39

Culture col. no.: DSM 24617, CGMCC 4.6864, JCM 19663

Strain history: CGMCC 4.6864 <-- L.-H. Lee 39.

NCBI tax ID(s): 999931 (species)

SI-ID 401745

DSM 24617

Special Collections

Section

Barrientosiimonas humi 39 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from Antarctic soil, upper top soil layer.

coccus-shaped
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermacoccaceae*
	Genus	*Barrientosiimonas*
	Species	**Barrientosiimonas humi**
	Full Scientific Name (LPSN)	Barrientosiimonas humi Lee et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30533]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.794

[Ref.: #30533]	Cell length	1.25 µm

[Ref.: #30533]	Cell width	0.315 µm

[Ref.: #30533]	Cell shape	coccus-shaped

[Ref.: #30533]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #30533]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17717]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #17717]

Culture medium growth

[Ref.: #17717]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17717]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17717]	growth	28 °C
[Ref.: #30533]	growth	24-40 °C
[Ref.: #30533]	optimum	32 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30533]			optimum	8
[Ref.: #30533]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30533]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %92.16

[Ref.: #30533]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30533]		NaCl		growth	0-14	%
[Ref.: #30533]		NaCl		optimum	2	%

[Ref.: #17717]	Murein short key	A11.36
[Ref.: #17717]	Murein types	A4alpha L-Lys-L-Ser-D-Asp

[Ref.: #30533]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30533]	acetate ChEBI	+	carbon source
[Ref.: #30533]	alanine ChEBI	+	carbon source
[Ref.: #30533]	arabinose ChEBI	+	carbon source
[Ref.: #30533]	arginine ChEBI	+	carbon source
[Ref.: #30533]	D-tryptophan ChEBI	+	carbon source
[Ref.: #30533]	dextrin ChEBI	+	carbon source
[Ref.: #30533]	esculin ChEBI	+	hydrolysis
[Ref.: #30533]	fructose ChEBI	+	carbon source
[Ref.: #30533]	galactose ChEBI	+	carbon source
[Ref.: #30533]	gluconate ChEBI	+	carbon source
[Ref.: #30533]	glucose ChEBI	+	carbon source
[Ref.: #30533]	glutamate ChEBI	+	carbon source
[Ref.: #30533]	glycerol ChEBI	+	carbon source
[Ref.: #30533]	histidine ChEBI	+	carbon source
[Ref.: #30533]	maltose ChEBI	+	carbon source
[Ref.: #30533]	mannose ChEBI	+	carbon source
[Ref.: #30533]	melibiose ChEBI	+	carbon source
[Ref.: #30533]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30533]	phenylalanine ChEBI	+	carbon source
[Ref.: #30533]	raffinose ChEBI	+	carbon source
[Ref.: #30533]	ribose ChEBI	+	carbon source
[Ref.: #30533]	salicin ChEBI	+	carbon source
[Ref.: #30533]	serine ChEBI	+	carbon source
[Ref.: #30533]	sucrose ChEBI	+	carbon source
[Ref.: #30533]	tween 40 ChEBI	+	carbon source
[Ref.: #30533]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30533]		catalase	+	1.11.1.6
[Ref.: #30533]		gelatinase	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	purine metabolism	85.11	80 of 94
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	myo-inositol biosynthesis	80	8 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	elloramycin biosynthesis	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	vitamin B12 metabolism	29.41	10 of 34
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	degradation of sugar acids	28	7 of 25
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17717]	Sample type/isolated from	Antarctic soil, upper top soil layer
[Ref.: #17717]	Geographic location (country and/or sea, region)	Barrientos Island (62°24' 26.0'' S 59° 44' 49.1'' W)
[Ref.: #17717]	Continent	Australia and Oceania
[Ref.: #17717]	Geographic location	-62.4072°/-59.7470°

[Ref.: #67770]	Sample type/isolated from	Soil from Barrientos Island in the Antarctic
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Psychrophilic (<10°C)	-
#Climate	#Cold	#Polar

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF346171 (>99% sequence identity) for Barrientosiimonas from Microbeatlas

Aquatic Samples	155
Soil Samples	161
Animal Samples	1304
Plant Samples	46
Total Samples	1666

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17717]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17717]	Barrientosiimonas humi strain 39 16S ribosomal RNA gene, partial sequence	JF346171	1495	GenBank ENA	999931 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Barrientosiimonas humi DSM 24617	GCA_006716095	contig	GenBank ENA	999931 tax ID
[Ref.: #66792]	Barrientosiimonas humi strain DSM 24617	999931.3	wgs	PATRIC	999931 tax ID	*
[Ref.: #66792]	Barrientosiimonas humi DSM 24617	2814122977	draft	JGI IMG/M	999931 tax ID	*

[Ref.: #17717]	GC-content	68.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30533]	GC-content	68.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Barrientosiimonas humi strain DSM 24617 PATRIC: 999931.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	57	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Barrientosiimonas humi strain DSM 24617 PATRIC: 999931.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.794	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.249	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.16	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	60.67	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	yes

Availability in culture collections External links

[Ref.: #17717]

Culture collection no.

DSM 24617, CGMCC 4.6864, JCM 19663

[Ref.: #73444]

SI-ID 401745

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Barrientosiimonas endolithica sp. nov., isolated from pebbles, reclassification of the only species of the genus Tamlicoccus, Tamlicoccus marinus Lee 2013, as Barrientosiimonas marina comb. nov. and emended description of the genus Barrientosiimonas.	Parag B, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.000374	2015	*
Phylogeny	Barrientosiimonas humi gen. nov., sp. nov., an actinobacterium of the family Dermacoccaceae.	Lee LH, Cheah YK, Sidik SM, Xie QY, Tang YL, Lin HP, Mutalib NA, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.038232-0	2012	*

References

#17717

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24617

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30533

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26865 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73444

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401745.1 )

#26865

IJSEM 241 2013 ( DOI 10.1099/ijs.0.038232-0 , PubMed 22389286 )

* These data were automatically processed and therefore are not curated

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Barrientosiimonas humi strain DSM 24617

Barrientosiimonas humi strain DSM 24617

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