Name: Branchiibius cervicis DSM 24166
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3933

Type strain:

Species: Branchiibius cervicis

Culture col. no.: DSM 24166, NRBC 106593, PAGU 1247

Strain history: <- J. Tomida, Aichi Gakuin University, Dept. of Microbiology, Nagoya,Japan; PAGU 1247 <- Meiji Pharmaceutical University, Tokyo, Japan

NCBI tax ID(s): 908252 (species)

SI-ID 403469

DSM 24166

Section

Branchiibius cervicis DSM 24166 is a mesophilic human pathogen that was isolated from skin of atopic dermatitis patient.

human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermacoccaceae*
	Genus	*Branchiibius*
	Species	**Branchiibius cervicis**
	Full Scientific Name (LPSN)	Branchiibius cervicis Tomida et al. 2013

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17522]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #17522]

Culture medium growth

[Ref.: #17522]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17522]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17522]			growth	28 °C

[Ref.: #17522]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17522]	Sample type/isolated from	skin of atopic dermatitis patient
[Ref.: #17522]	Geographic location (country and/or sea, region)	Saitama
[Ref.: #17522]	Country	Japan
[Ref.: #17522]	Country ISO 3 Code	JPN
[Ref.: #17522]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB594446 (>99% sequence identity) for Branchiibius from Microbeatlas

Aquatic Samples	355
Soil Samples	151
Animal Samples	1282
Plant Samples	55
Total Samples	1843

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17522]	Pathogenicity (human)	yes, in single cases
[Ref.: #17522]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17522]	Branchiibius cervicis gene for 16S ribosomal RNA, partial sequence, strain: PAGU 1247	AB594446	1397	ENA	908252 tax ID

[Ref.: #17522]

GC-content

67.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17522]

Culture collection no.

DSM 24166, NRBC 106593, PAGU 1247

[Ref.: #73443]

SI-ID 403469

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Branchiibius cervicis sp. nov., a novel species isolated from patients with atopic dermatitis.	Tomida J, Sakamoto D, Sugita T, Fujiwara N, Naka T, Hamada M, Morita Y, Kawamura Y	Syst Appl Microbiol	10.1016/j.syapm.2011.08.003	2011	*

References

#17522

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24166

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73443

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403469.1 )

* These data were automatically processed and therefore are not curated

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